genome.fa.s124.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  52  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10917671--10917733	1	63.0	1	77	0	63	1	9	0	88	0.57
10917669--10917737	8	8.6	8	80	6	70	1	11	0	86	0.62
10917653--10917720	17	3.9	17	79	7	73	1	16	0	82	0.75
10917663--10917737	18	4.0	19	87	8	109	1	13	0	85	0.67
10918618--10918666	23	2.3	21	83	13	57	42	24	8	24	1.81
10923845--10923877	14	2.3	15	89	5	50	27	0	9	63	1.24
10923860--10924056	60	3.3	59	73	14	190	31	11	7	48	1.68
10923974--10924114	72	1.9	73	88	1	212	32	9	7	51	1.61
10924123--10924306	57	3.2	58	77	8	169	32	11	7	47	1.69
10924059--10924314	58	4.4	56	72	15	180	35	11	7	46	1.67
10924331--10924363	10	3.3	10	87	12	50	66	0	0	33	0.92
10924335--10924371	15	2.5	15	91	4	58	67	0	0	32	0.91
10924311--10924368	19	3.0	19	75	12	55	72	1	0	25	0.94
10924678--10924716	19	2.1	18	95	4	69	0	35	0	64	0.94
10925651--10925689	20	2.0	21	85	10	55	56	0	7	35	1.28
10926270--10926339	13	5.4	14	78	10	60	52	15	10	21	1.71
10926270--10926320	26	2.0	26	84	7	68	50	15	9	23	1.73
10926278--10926344	26	2.6	26	80	0	71	52	16	8	22	1.71
10926348--10926422	38	1.9	39	83	2	98	46	25	5	22	1.73
10927349--10927987	288	2.2	286	80	6	713	35	13	10	41	1.78
10927317--10927975	144	4.6	144	79	7	628	34	13	11	41	1.80
10929028--10929413	211	1.8	210	82	8	498	42	6	11	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10929028--10929476	210	2.1	210	80	8	477	42	7	12	37	1.70
10931572--10931646	30	2.5	30	85	12	109	30	24	13	32	1.93
10936360--10936411	10	5.4	9	77	20	52	84	3	3	7	0.85
10936360--10936420	29	2.1	30	84	9	81	81	6	4	6	0.96
10936768--10936799	13	2.5	13	94	0	55	81	0	18	0	0.70
10938319--10938466	70	2.1	71	84	3	192	37	17	11	33	1.86
10938366--10938619	112	2.3	110	85	4	332	37	19	10	32	1.86
10938787--10938811	13	1.9	13	100	0	50	20	24	16	40	1.91
10939181--10939426	87	2.8	87	86	3	325	34	18	12	34	1.88
10940108--10940786	144	4.7	144	83	5	732	33	13	11	41	1.80
10940171--10940789	290	2.1	289	83	5	761	33	12	11	42	1.79
10941438--10941478	21	1.9	22	85	5	57	48	2	2	46	1.28
10942591--10942625	18	1.9	18	88	11	54	65	0	8	25	1.21
10942918--10942989	32	2.3	31	78	4	81	48	33	2	15	1.59
10942920--10942989	16	4.5	15	77	12	61	47	34	2	15	1.61
10949584--10949752	90	1.9	90	97	0	320	30	15	24	29	1.95
10950873--10950909	16	2.3	16	90	0	56	10	16	0	72	1.10
10954403--10954436	9	3.7	9	96	4	59	79	0	0	20	0.73
10954391--10954437	11	4.5	11	84	10	62	78	0	2	19	0.85
10954392--10954437	20	2.3	20	92	0	74	78	0	2	19	0.86
10955473--10955989	109	4.7	109	86	4	677	20	20	13	44	1.85
10956072--10956207	69	2.0	70	86	4	195	26	17	11	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10956177--10956267	45	2.0	45	95	0	164	17	14	16	51	1.76
10956349--10956444	45	2.1	46	92	1	158	20	14	14	50	1.78
10956133--10956580	180	2.5	182	91	1	704	21	18	14	45	1.85
10956403--10956752	135	2.6	135	87	0	522	21	18	14	46	1.83
10958530--10958577	16	3.1	15	85	11	62	52	33	2	12	1.51
10960318--10960768	211	2.1	208	82	8	529	44	9	9	36	1.70
10960789--10960830	18	2.4	17	80	11	50	30	0	2	66	1.04
10962924--10963628	290	2.4	288	80	7	751	32	14	12	41	1.82
10963944--10963979	19	2.0	18	89	10	56	27	5	61	5	1.41
10966049--10966074	2	13.0	2	100	0	52	50	0	0	50	1.00
10966566--10966609	17	2.7	16	82	6	52	0	6	6	86	0.71
10969688--10969757	30	2.3	29	85	7	95	55	4	7	32	1.46
10973232--10973267	19	1.9	18	88	5	54	27	0	25	47	1.52
10974496--10974521	13	2.0	13	100	0	52	84	0	0	15	0.62
10975912--10975937	13	2.0	13	100	0	52	84	0	0	15	0.62
10984405--10984452	17	2.8	17	83	0	69	72	0	14	12	1.11
10985502--10986004	87	5.8	86	76	6	388	25	13	15	44	1.83
10985765--10986014	91	2.8	89	80	7	276	26	15	16	42	1.87
10985546--10986050	44	11.5	44	77	5	391	25	14	16	43	1.85
10986528--10986567	20	2.0	20	90	0	62	22	7	17	52	1.69
10987478--10987570	49	1.9	48	93	2	159	54	8	12	23	1.65
10987562--10987587	13	2.0	13	100	0	52	84	0	0	15	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10992309--10992364	20	2.8	20	81	10	78	44	37	3	14	1.62
10992366--10992410	19	2.2	20	84	11	65	44	44	0	11	1.39
10992469--10992512	18	2.3	20	81	14	58	50	38	0	11	1.39
10992518--10992619	19	5.2	19	73	15	82	46	31	1	20	1.62
10994246--10994304	10	5.8	10	80	9	66	83	5	11	0	0.81
10994590--10994665	32	2.5	31	78	6	82	40	19	13	26	1.88
10994680--10994743	32	2.0	32	84	6	85	29	7	18	43	1.78
10996847--10996880	17	2.0	17	100	0	68	52	17	0	29	1.45
11002609--11002676	20	3.3	20	79	8	66	47	30	0	22	1.52
11003501--11004001	102	4.9	102	80	3	528	43	18	7	29	1.78
11003558--11004001	203	2.2	203	84	0	566	44	18	7	29	1.77
11004056--11004100	23	2.0	21	84	16	56	46	22	2	28	1.63
11013906--11013936	3	10.3	3	100	0	62	32	32	0	35	1.58
11018702--11018795	47	2.0	47	95	0	170	55	19	4	21	1.60
11018881--11018916	17	2.1	17	89	0	54	30	33	16	19	1.94
11021958--11021984	14	1.9	14	100	0	54	40	0	0	59	0.98
11023144--11023189	20	2.3	20	78	14	51	2	6	6	84	0.84
11024937--11025172	87	2.7	87	80	3	269	41	11	6	40	1.67
11025908--11025946	2	19.5	2	100	0	78	0	48	0	51	1.00
11025946--11025977	2	16.5	2	93	6	57	46	0	0	53	1.00
11026251--11026281	3	10.3	3	100	0	62	32	0	0	67	0.91
11034731--11034826	49	2.0	49	83	4	122	38	19	11	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11039931--11039968	14	2.9	14	88	7	53	23	0	0	76	0.79
11040726--11040779	27	2.1	25	83	13	65	35	9	0	55	1.32
11042140--11042180	21	2.0	21	85	9	57	41	0	7	51	1.30
11043835--11043883	18	2.6	20	75	9	50	57	6	2	34	1.35
11044867--11044915	15	3.3	15	77	2	55	36	0	2	61	1.08
11045836--11045869	5	6.6	5	89	3	50	73	0	0	26	0.83
11045836--11045879	15	2.9	15	86	3	52	68	0	2	29	1.02
11046167--11046240	14	5.1	14	70	15	53	72	1	12	13	1.18
11050112--11050157	3	15.3	3	100	0	92	65	0	0	34	0.93
11051221--11051265	17	2.5	18	85	7	65	33	4	2	60	1.29
11055054--11055094	20	2.0	21	86	9	59	65	14	0	19	1.26
11058356--11058399	19	2.3	19	88	7	63	72	4	4	18	1.19
11059989--11060020	3	10.7	3	100	0	64	31	0	0	68	0.90
11068466--11068525	25	2.4	25	80	5	68	75	6	11	6	1.19
11068466--11068525	31	2.0	30	83	3	75	75	6	11	6	1.19
11069672--11069752	41	2.0	41	95	0	144	28	16	20	34	1.94
11069673--11069765	41	2.3	41	88	0	132	30	17	17	35	1.93
11070023--11070071	26	1.9	25	88	12	73	77	2	12	8	1.07
11070040--11070080	20	2.1	19	86	4	55	80	2	12	4	0.97
11070065--11070132	33	2.1	33	81	5	77	64	4	13	17	1.43
11070233--11070285	23	2.3	23	83	6	63	30	22	15	32	1.94
11070290--11070339	23	2.2	23	82	3	57	38	22	16	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11070381--11070443	23	2.7	23	74	16	67	30	30	14	25	1.95
11070713--11071002	103	2.9	102	82	7	335	36	17	13	31	1.89
11071008--11071049	22	1.9	22	90	0	66	33	19	16	30	1.94
11071324--11071389	15	4.6	13	78	12	60	83	7	3	6	0.90
11071324--11071389	31	2.2	30	81	10	73	83	7	3	6	0.90
11071639--11071674	3	12.0	3	100	0	72	33	0	0	66	0.92
11077245--11077335	43	2.1	44	81	6	105	56	7	12	24	1.62
11098158--11098594	217	2.0	217	95	0	784	37	19	12	30	1.88
11105837--11105893	21	2.6	22	75	13	55	68	5	0	26	1.11
11109063--11109098	19	1.9	19	94	5	65	80	2	11	5	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138