genome.fa.s124.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  103  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15927475--15927527	26	2.0	26	88	0	79	28	26	18	26	1.98
15927501--15928001	159	3.2	157	78	4	531	18	27	30	23	1.98
15927975--15928027	26	2.0	26	89	7	81	30	22	18	28	1.98
15928623--15929459	184	4.5	185	74	10	665	19	27	28	24	1.98
15928778--15929499	356	2.0	360	85	4	970	18	27	30	22	1.98
15929274--15929766	158	3.1	158	73	5	458	18	28	30	22	1.97
15929749--15929799	26	2.0	26	92	0	84	21	25	21	31	1.98
15930530--15931246	158	4.5	157	76	3	589	18	26	32	22	1.97
15930532--15931141	317	1.9	317	81	2	724	18	26	32	22	1.97
15933182--15933234	26	2.0	26	96	0	97	30	28	16	24	1.97
15933522--15933574	26	2.0	26	92	7	90	30	28	18	22	1.98
15933110--15933918	341	2.4	341	83	2	1007	19	27	28	23	1.98
15935464--15935840	159	2.4	156	77	8	395	20	24	30	24	1.99
15935918--15935970	26	2.0	26	89	7	81	26	20	20	32	1.98
15936273--15936350	26	3.0	26	98	0	147	26	29	19	24	1.98
15936365--15936828	159	2.9	157	77	6	423	20	25	30	23	1.98
15937686--15938072	147	2.5	156	72	11	400	18	27	30	23	1.98
15938185--15938235	26	2.0	26	92	0	84	29	25	17	27	1.98
15938684--15938736	26	2.0	26	89	7	81	28	22	18	30	1.98
15939418--15939470	26	2.0	26	92	0	88	28	24	18	28	1.98
15939516--15939943	159	2.7	158	81	4	468	17	27	31	23	1.97
15939444--15939934	158	3.1	159	78	4	508	18	26	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15940641--15940693	26	2.0	26	85	0	70	28	26	16	28	1.97
15940983--15941035	26	2.0	26	89	7	81	28	24	18	28	1.98
15941918--15941951	17	2.0	17	100	0	68	41	11	17	29	1.85
15945469--15945521	26	2.0	26	92	0	88	26	30	18	24	1.98
15945812--15946181	184	2.0	184	84	3	485	20	25	29	25	1.99
15952514--15952565	26	2.0	26	96	0	95	26	28	19	25	1.98
15952663--15953076	159	2.6	159	80	5	487	21	27	28	23	1.99
15953199--15953251	26	2.0	26	96	0	97	26	28	20	24	1.99
15954104--15954156	26	2.0	26	88	0	79	28	26	18	26	1.98
15954348--15954819	159	3.0	159	76	6	389	20	26	29	23	1.99
15954131--15954806	330	2.1	318	80	5	730	19	26	29	24	1.98
15954131--15954989	318	2.7	314	78	5	842	19	25	30	24	1.98
15955119--15955171	26	2.0	26	92	0	88	26	22	20	30	1.98
15956271--15956612	184	1.9	184	83	2	445	20	26	27	24	1.99
15956540--15956592	26	2.0	26	82	7	63	32	22	16	28	1.96
15956775--15957276	158	3.2	156	78	5	517	20	26	29	23	1.99
15956839--15957311	158	3.0	159	79	3	540	19	28	30	22	1.98
15957650--15957702	26	2.0	26	88	0	79	24	26	20	28	1.99
15959388--15959889	158	3.2	158	76	2	504	19	26	29	24	1.98
15959865--15959915	26	2.0	26	88	0	75	23	21	21	33	1.97
15960086--15960138	26	2.0	26	92	0	88	26	26	20	26	1.99
15961635--15961690	26	2.2	26	86	0	76	32	21	16	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15961835--15961887	26	2.0	26	92	7	90	26	24	20	28	1.99
15961604--15962057	197	2.3	195	84	2	597	21	25	27	24	1.99
15962188--15962240	26	2.0	26	88	0	79	28	26	18	26	1.98
15962543--15962901	184	1.9	185	83	3	465	21	27	27	23	1.99
15963744--15963796	26	2.0	26	89	7	81	28	26	18	26	1.98
15963804--15964270	158	3.0	159	79	3	496	19	28	29	22	1.98
15963777--15964269	157	3.1	158	78	3	508	19	27	29	23	1.98
15964245--15964295	26	2.0	26	92	0	84	25	21	19	33	1.97
15964453--15964505	26	2.0	26	88	0	79	24	28	20	26	1.99
15964522--15964820	157	1.9	158	83	3	388	17	29	30	22	1.97
15965452--15966031	158	3.6	158	75	7	470	19	27	29	23	1.98
15966003--15966055	26	2.0	26	92	0	88	28	24	18	28	1.98
15966200--15966252	26	2.0	26	92	7	90	26	24	20	28	1.99
15965902--15966421	197	2.7	194	80	6	568	20	26	28	25	1.99
15966552--15966604	26	2.0	26	88	0	79	28	26	18	26	1.98
15967053--15967105	26	2.0	26	86	13	74	30	24	16	28	1.97
15966982--15967471	196	2.5	196	82	1	590	19	26	28	25	1.99
15967602--15967654	26	2.0	26	89	7	81	32	26	15	26	1.95
15968101--15968156	26	2.2	26	87	6	78	30	25	17	26	1.97
15969388--15969440	26	2.0	26	85	7	72	24	26	18	30	1.98
15969414--15969915	158	3.2	159	77	6	466	19	24	30	25	1.98
15968687--15969964	697	1.8	696	82	1	1619	20	25	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15969889--15969941	26	2.0	26	89	7	81	26	22	20	30	1.98
15970255--15970307	26	2.0	26	92	0	88	28	26	16	28	1.97
15972313--15972365	26	2.0	26	85	7	72	32	20	15	32	1.93
15971950--15972675	342	2.1	342	81	3	843	20	26	29	24	1.99
15972476--15972861	158	2.4	157	75	7	357	18	25	30	24	1.98
15973436--15973488	26	2.0	26	89	7	81	28	24	18	28	1.98
15973558--15973600	11	4.0	11	90	3	61	20	30	34	13	1.92
15975016--15975068	26	2.0	26	88	0	79	26	28	18	26	1.98
15975518--15975570	26	2.0	26	92	0	88	26	26	20	26	1.99
15975952--15976004	26	2.0	26	89	7	81	24	24	22	28	2.00
15976331--15976382	25	2.0	26	92	3	88	26	25	21	26	1.99
15976356--15976735	159	2.4	157	76	8	399	21	23	30	24	1.99
15976831--15976899	26	2.7	25	82	6	84	23	26	18	31	1.97
15977136--15977188	26	2.0	26	96	0	97	26	28	20	24	1.99
15977162--15977664	159	3.2	155	74	9	442	20	25	29	24	1.99
15977638--15977716	26	3.0	26	96	3	142	26	22	20	30	1.98
15978854--15979428	158	3.6	157	74	6	430	20	27	28	24	1.99
15979402--15979454	26	2.0	26	85	7	72	26	24	22	26	2.00
15979319--15979671	184	1.9	186	84	3	480	20	25	28	25	1.99
15980126--15980177	26	2.0	26	88	0	77	30	28	15	25	1.96
15982033--15982085	26	2.0	26	88	0	79	28	26	18	26	1.98
15983100--15983152	26	2.0	26	92	0	88	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15984808--15984881	26	2.9	25	93	4	121	27	18	29	24	1.98
15985671--15985722	26	2.0	26	88	0	77	30	19	21	28	1.97
15986707--15986759	26	2.0	26	89	7	81	28	18	24	28	1.98
15987211--15987264	26	2.1	26	92	0	90	25	20	27	25	1.99
15987022--15987952	347	2.6	356	79	7	971	23	29	26	19	1.99
15987730--15988127	157	2.5	157	76	6	435	22	31	26	19	1.97
15987730--15988214	159	3.1	157	73	7	426	21	31	27	19	1.97
15988238--15988290	26	2.0	26	88	0	79	26	18	26	28	1.98
15989501--15989916	159	2.6	159	78	4	390	25	28	26	19	1.99
15990444--15990495	26	2.0	25	92	3	86	28	21	25	25	1.99
15990833--15990885	26	2.0	26	89	7	81	22	18	30	28	1.98
15991043--15991095	26	2.0	26	85	7	72	24	22	24	28	2.00
15991069--15991487	159	2.6	158	80	4	434	24	29	26	19	1.98
15991544--15991596	26	2.0	26	85	0	70	26	16	26	30	1.97
15991912--15991964	26	2.0	26	89	7	81	30	20	22	26	1.98
15992412--15992464	26	2.0	26	92	0	88	26	20	26	26	1.99
15993312--15993364	26	2.0	26	88	0	79	26	18	26	28	1.98
15993127--15993711	184	3.1	183	78	10	622	24	28	24	21	1.99
15993280--15993667	196	2.0	196	85	3	530	23	29	26	21	1.99
15995953--15996005	26	2.0	26	88	0	79	26	18	26	28	1.98
15996149--15996201	26	2.0	26	92	7	90	28	20	24	26	1.99
15995921--15996296	196	1.9	197	85	4	519	23	28	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15996174--15996536	159	2.3	158	81	5	419	25	30	24	19	1.98
15996631--15996915	140	2.0	140	84	2	367	26	26	26	20	1.99
15996949--15997315	159	2.3	157	81	5	409	23	31	26	18	1.98
15997289--15997339	25	2.0	26	88	3	77	27	17	25	29	1.98
15997496--15997548	26	2.0	26	85	7	72	32	20	20	26	1.98
15997680--15997732	26	2.0	26	89	7	81	26	18	26	28	1.98
15997131--15998095	392	2.5	391	82	3	1104	25	26	26	21	2.00
15997889--15997941	26	2.0	26	89	7	81	28	18	24	28	1.98
15997914--15998319	157	2.6	156	78	5	433	26	28	26	18	1.98
15997914--15998414	157	3.2	156	75	6	429	25	29	25	19	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138