genome.fa.s124.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  62  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12683175--12683228	26	2.1	26	89	0	81	29	20	25	24	1.99
12683902--12683954	26	2.0	26	88	0	79	32	20	22	24	1.98
12683927--12684373	159	2.8	157	74	6	398	23	31	27	17	1.97
12684403--12684455	26	2.0	26	92	0	88	26	20	26	26	1.99
12684797--12685298	158	3.2	157	76	2	486	23	28	26	20	1.99
12685272--12685324	26	2.0	26	96	0	97	24	20	28	26	1.99
12686672--12686727	26	2.2	26	90	6	87	30	19	21	28	1.98
12687688--12687737	26	1.9	26	91	0	82	28	20	26	26	1.99
12688024--12688076	26	2.0	26	92	7	90	30	20	22	26	1.98
12688215--12689671	343	4.2	342	75	11	1335	23	28	28	20	1.99
12689087--12689580	159	3.1	158	80	2	587	20	28	29	21	1.98
12696153--12696204	26	2.0	26	88	7	79	26	21	25	26	1.99
12696349--12696401	26	2.0	26	88	0	79	24	20	26	28	1.99
12696728--12696779	26	2.0	26	92	7	88	28	19	25	26	1.98
12696753--12697195	159	2.8	157	74	8	430	23	28	28	19	1.98
12697218--12697269	26	2.0	26	88	0	77	25	13	26	34	1.93
12698114--12698169	26	2.2	26	96	0	103	25	19	26	28	1.99
12698494--12698546	26	2.0	26	89	7	81	28	18	24	28	1.98
12698402--12698781	209	1.8	209	86	1	555	24	27	25	22	2.00
12698296--12699892	552	2.9	548	81	5	1690	23	28	26	20	1.99
12699255--12699307	26	2.0	26	82	13	65	28	18	22	30	1.98
12699598--12699650	26	2.0	26	92	7	90	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12699806--12699858	26	2.0	26	89	7	81	28	18	24	28	1.98
12700270--12700322	26	2.0	26	88	0	79	26	18	26	28	1.98
12701824--12701876	26	2.0	26	85	7	72	30	18	22	28	1.98
12702267--12702697	154	2.8	154	75	4	402	24	30	26	18	1.98
12702737--12702789	26	2.0	26	92	0	88	24	18	28	28	1.98
12702945--12702996	26	2.0	25	88	3	77	30	19	21	28	1.97
12703441--12703492	26	2.0	26	88	3	79	25	19	26	28	1.98
12703648--12703699	26	2.0	25	88	3	77	30	19	21	28	1.97
12702002--12704218	703	3.2	704	90	2	3171	23	27	26	22	1.99
12704511--12704562	25	2.0	26	85	10	72	26	17	25	30	1.97
12705480--12705529	25	2.0	25	88	4	73	26	22	24	28	1.99
12706200--12706278	26	3.0	25	87	7	106	31	16	24	27	1.96
12707732--12707784	26	2.0	26	92	0	88	26	20	26	26	1.99
12708457--12708555	26	3.8	27	89	7	136	30	19	22	28	1.98
12708509--12708964	184	2.5	184	86	2	605	25	28	25	20	1.99
12708879--12708929	26	2.0	26	92	0	84	29	19	27	23	1.98
12709644--12710131	159	3.1	157	76	6	367	22	29	28	20	1.98
12710105--12710157	26	2.0	26	92	0	88	26	20	26	26	1.99
12710498--12710843	158	2.2	157	81	6	387	23	30	26	19	1.98
12710816--12710869	26	2.1	26	93	6	92	27	22	25	24	2.00
12712404--12712456	26	2.0	26	85	7	72	32	22	20	24	1.98
12712429--12712786	158	2.3	158	79	3	414	24	28	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12713271--12713323	26	2.0	26	85	7	72	30	20	20	28	1.98
12713773--12713824	26	2.0	26	88	0	77	25	19	26	28	1.98
12711533--12716106	869	5.2	864	79	5	4589	22	29	27	20	1.98
12714140--12714192	26	2.0	26	82	7	63	26	18	26	28	1.98
12714166--12714667	158	3.2	157	73	6	438	22	30	27	19	1.98
12714973--12715004	12	2.7	12	95	0	55	3	34	28	34	1.73
12715064--12715555	158	3.1	158	73	11	367	23	31	27	17	1.97
12715897--12715948	25	2.0	26	85	10	72	28	23	21	26	1.99
12716080--12716132	26	2.0	26	89	7	81	28	16	26	28	1.97
12716803--12716855	26	2.0	26	92	7	90	28	16	24	30	1.97
12717146--12717198	26	2.0	26	82	7	63	24	16	28	30	1.97
12716800--12717617	356	2.3	356	79	9	868	24	28	27	19	1.99
12716800--12717764	356	2.7	343	76	12	861	24	29	26	20	1.99
12724644--12725350	159	4.4	159	76	8	583	20	28	29	21	1.98
12725324--12725376	26	2.0	26	92	0	88	28	28	18	24	1.98
12725660--12725712	26	2.0	26	89	7	81	24	24	22	28	2.00
12726393--12726445	26	2.0	26	92	0	88	28	28	18	24	1.98
12726419--12727237	316	2.6	317	82	3	952	21	27	28	22	1.99
12726419--12727236	159	5.2	156	71	11	520	21	27	28	22	1.99
12727933--12727985	26	2.0	26	85	0	70	28	24	18	28	1.98
12728278--12728328	26	2.0	26	88	7	77	29	21	17	31	1.96
12728304--12728670	171	2.1	171	82	3	441	21	26	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12728644--12728695	25	2.0	26	92	3	88	30	28	15	25	1.96
12729878--12729930	26	2.0	26	88	0	79	32	26	15	26	1.95
12730220--12730272	26	2.0	26	96	0	97	26	28	20	24	1.99
12736529--12736581	26	2.0	26	89	7	81	28	26	18	26	1.98
12737090--12737120	12	2.6	12	100	0	62	22	29	41	6	1.78
12737226--12737278	26	2.0	26	92	0	88	28	28	18	24	1.98
12737389--12737753	158	2.3	158	79	6	398	20	25	29	23	1.99
12737252--12737752	159	3.2	158	76	9	504	20	27	29	22	1.99
12741053--12741665	159	3.9	159	78	4	589	22	27	28	22	1.99
12741718--12741770	26	2.0	26	92	0	88	28	28	18	24	1.98
12742060--12742112	26	2.0	26	89	7	81	24	24	22	28	2.00
12742792--12742844	26	2.0	26	92	0	88	26	26	20	26	1.99
12743291--12743343	26	2.0	26	86	13	74	30	24	16	28	1.97
12743994--12744046	26	2.0	26	92	0	88	26	26	20	26	1.99
12744020--12744510	158	3.1	156	72	11	408	21	25	28	24	1.99
12744875--12744927	26	2.0	26	85	7	72	30	26	18	24	1.98
12752084--12752369	159	1.8	158	81	2	358	17	30	30	21	1.96
12752867--12753386	159	3.3	158	80	5	487	20	27	28	23	1.99
12754945--12754997	26	2.0	26	88	0	79	26	24	20	28	1.99
12755270--12755322	26	2.0	26	89	7	81	30	20	16	32	1.95
12756795--12756847	26	2.0	26	92	0	88	28	28	18	24	1.98
12757265--12757317	26	2.0	26	82	7	63	26	24	16	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12757996--12758048	26	2.0	26	88	0	79	28	26	18	26	1.98
12764110--12764162	26	2.0	26	89	7	81	26	26	20	26	1.99
12764186--12764215	12	2.5	12	94	0	51	30	26	36	6	1.82
12764491--12764543	26	2.0	26	88	0	79	33	24	16	24	1.96
12764946--12765311	188	2.0	184	82	5	450	22	24	28	24	2.00
12765463--12765515	26	2.0	26	88	0	79	28	26	20	24	1.99
12765019--12765833	356	2.3	348	80	5	856	20	27	28	23	1.99
12765486--12765994	159	3.2	158	80	5	567	21	28	28	21	1.99
12766664--12766716	26	2.0	26	92	0	88	28	28	18	24	1.98
12766827--12767229	158	2.5	157	79	6	429	20	27	29	23	1.99
12767347--12767425	26	3.0	26	90	0	122	27	27	20	24	1.99
12768083--12768135	26	2.0	26	88	0	79	28	26	18	26	1.98
12768584--12768636	26	2.0	26	92	7	90	26	24	18	30	1.98
12768910--12768965	26	2.2	26	90	6	87	28	23	19	28	1.98
12768946--12769282	158	2.1	159	81	2	383	19	26	30	23	1.98
12770522--12770936	158	2.6	156	78	5	413	19	27	28	24	1.99
12770909--12770961	26	2.0	26	85	7	72	26	20	22	30	1.98
12777510--12777874	158	2.3	158	80	2	392	20	24	30	25	1.98
12778224--12778274	26	2.0	26	92	0	84	37	31	5	25	1.80
12779087--12779139	26	2.0	26	92	7	90	26	24	20	28	1.99
12779458--12779824	158	2.3	158	82	3	432	19	26	29	24	1.98
12779326--12779824	159	3.1	157	77	4	518	20	27	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12779798--12779847	26	2.0	25	85	11	68	26	24	22	28	1.99
12779704--12780212	196	2.6	191	81	4	617	20	27	29	22	1.98
12778898--12780554	705	2.3	702	80	5	1752	21	26	28	23	1.99
12780222--12780520	158	1.9	157	81	4	359	20	24	30	24	1.98
12780114--12780520	159	2.6	159	76	5	410	18	27	29	24	1.98
12781541--12781594	26	2.1	26	93	6	92	27	24	20	27	1.99
12781898--12781950	26	2.0	26	92	7	90	26	24	20	28	1.99
12781835--12782306	184	2.5	191	82	4	553	22	27	26	24	1.99
12782082--12782134	26	2.0	26	85	7	72	28	22	16	32	1.96
12781384--12782464	540	2.0	532	81	7	1261	21	26	27	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138