genome.fa.s124.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  71  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13427436--13427488	26	2.0	26	92	0	88	24	18	26	30	1.98
13428159--13428209	26	2.0	26	88	7	77	31	15	25	27	1.96
13428501--13428558	26	2.2	26	84	3	80	25	22	22	29	1.99
13429655--13429707	26	2.0	26	89	7	81	24	16	28	30	1.97
13430401--13430903	159	3.2	158	78	5	498	23	31	26	18	1.98
13430622--13431366	343	2.2	342	87	1	1064	24	31	26	18	1.97
13431220--13431272	26	2.0	26	92	7	90	28	16	24	30	1.97
13431243--13431485	119	2.0	119	83	3	301	26	29	27	16	1.97
13431535--13431587	26	2.0	26	92	0	88	26	22	22	28	1.99
13432159--13432193	12	2.9	12	95	0	61	5	34	25	34	1.80
13432215--13432267	26	2.0	26	92	7	90	28	20	24	26	1.99
13432213--13432606	189	2.1	189	79	5	417	24	29	26	19	1.99
13433217--13433249	11	3.0	11	95	0	57	18	33	27	21	1.96
13433327--13433661	159	2.1	159	79	6	349	24	30	26	19	1.98
13433635--13433687	26	2.0	26	85	0	70	30	20	22	26	1.98
13434357--13434407	26	2.0	26	88	7	77	29	19	21	29	1.98
13434701--13434751	26	2.0	26	92	0	84	27	19	27	25	1.99
13434895--13435197	158	1.9	158	79	4	342	21	34	27	16	1.95
13434383--13435366	512	1.9	513	81	3	1201	22	29	26	20	1.98
13435249--13435564	171	1.8	171	81	4	395	22	31	26	20	1.98
13435626--13435913	159	1.8	158	80	3	346	24	32	25	17	1.96
13436080--13436132	26	2.0	26	88	0	79	24	16	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13443871--13444212	157	2.2	157	83	5	415	26	28	26	19	1.99
13444594--13444889	158	1.9	158	82	2	380	25	30	26	17	1.97
13444594--13444938	158	2.2	158	79	3	354	25	30	25	18	1.98
13445071--13445123	26	2.0	26	89	7	81	28	18	24	28	1.98
13445414--13445466	26	2.0	26	88	0	79	24	16	28	30	1.97
13445717--13446208	158	3.1	156	73	6	445	23	29	27	18	1.98
13445875--13446680	343	2.3	349	80	5	877	24	29	27	18	1.98
13447794--13448294	159	3.2	156	76	8	419	23	28	26	21	1.99
13448268--13448320	26	2.0	26	92	7	90	26	16	26	30	1.97
13449331--13449383	26	2.0	26	88	0	79	26	16	28	28	1.97
13449720--13449772	26	2.0	26	96	0	97	28	16	24	30	1.97
13451055--13451107	26	2.0	26	92	0	88	22	22	28	26	1.99
13451398--13451450	26	2.0	26	88	0	79	24	20	28	26	1.99
13451595--13451650	26	2.2	26	90	6	87	28	17	23	30	1.97
13451374--13451742	197	1.9	197	84	3	492	23	26	27	22	2.00
13452096--13452148	26	2.0	26	92	0	88	26	18	28	26	1.98
13452438--13452736	158	1.9	159	81	3	370	23	31	25	19	1.98
13452904--13452956	26	2.0	26	88	0	79	26	18	26	28	1.98
13451530--13453133	807	2.0	808	80	2	1801	22	28	26	22	1.99
13453283--13453335	26	2.0	26	89	7	81	28	18	24	28	1.98
13453546--13453580	16	2.2	16	89	0	52	8	28	28	34	1.87
13453608--13453660	26	2.0	26	88	0	79	28	15	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13454003--13454222	118	1.9	118	84	1	298	26	25	29	18	1.98
13454369--13454393	13	1.9	13	100	0	50	24	20	48	8	1.76
13454441--13454950	170	3.1	170	74	9	528	22	31	27	19	1.98
13454622--13454993	159	2.3	159	78	5	378	23	30	25	21	1.99
13454975--13455027	26	2.0	26	88	0	79	22	18	28	30	1.98
13454970--13455242	134	2.0	133	78	2	278	27	25	26	20	1.99
13455144--13455636	158	3.1	157	72	8	426	23	27	26	21	1.99
13455610--13455662	26	2.0	26	88	0	79	26	18	26	28	1.98
13455978--13456030	26	2.0	26	89	7	81	30	18	22	28	1.98
13456004--13456505	158	3.2	157	78	3	443	21	30	27	20	1.98
13456479--13456531	26	2.0	26	88	0	79	26	18	26	28	1.98
13457271--13457323	26	2.0	26	92	0	88	26	20	26	26	1.99
13458793--13458845	26	2.0	26	96	0	97	24	20	28	26	1.99
13459132--13459193	26	2.4	26	94	0	106	19	19	30	30	1.96
13466508--13466563	26	2.2	26	96	0	103	25	19	28	26	1.99
13466693--13467083	159	2.5	159	78	5	423	24	30	24	19	1.98
13467916--13467968	26	2.0	26	92	7	90	28	20	24	26	1.99
13467941--13468377	158	2.8	156	75	7	418	24	29	27	17	1.97
13468415--13468467	26	2.0	26	85	7	72	26	16	26	30	1.97
13468576--13468622	21	2.2	22	85	11	71	17	40	19	23	1.91
13468791--13468841	26	2.0	26	92	0	84	25	17	27	29	1.98
13468232--13468935	376	1.9	374	84	2	948	23	30	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13469134--13469186	26	2.0	26	92	7	90	30	20	22	26	1.98
13469159--13469560	158	2.5	158	73	5	362	24	28	28	18	1.98
13469636--13469686	26	2.0	26	92	0	84	25	17	29	27	1.98
13470353--13470405	26	2.0	26	85	7	72	30	18	22	28	1.98
13470379--13470860	158	3.0	157	75	6	479	23	30	26	18	1.98
13470378--13470817	159	2.8	157	76	6	429	23	30	27	18	1.97
13471048--13471100	26	2.0	26	89	7	81	30	16	20	32	1.95
13471549--13471601	26	2.0	26	92	7	90	28	16	24	30	1.97
13472308--13472810	159	3.2	159	74	5	399	23	30	26	19	1.98
13472784--13472836	26	2.0	26	92	0	88	26	20	26	26	1.99
13473677--13473728	26	2.0	26	88	7	79	26	17	26	28	1.97
13473518--13474014	249	2.0	249	85	1	665	24	27	26	20	1.99
13473925--13473977	26	2.0	26	88	0	79	28	20	24	26	1.99
13474911--13474962	26	2.0	26	88	0	77	30	13	23	32	1.93
13474936--13475344	159	2.6	156	75	4	383	25	27	27	19	1.99
13476134--13476186	26	2.0	26	88	0	79	32	20	22	24	1.98
13476160--13476661	158	3.2	158	79	6	458	22	30	28	18	1.97
13476635--13476687	26	2.0	26	82	7	63	26	18	26	28	1.98
13477511--13477563	26	2.0	26	85	7	72	24	15	28	32	1.95
13477649--13477691	12	3.6	12	83	0	59	6	44	27	20	1.77
13477646--13477691	24	1.9	24	90	0	74	6	47	26	19	1.73
13477870--13477919	26	1.9	26	91	0	82	28	22	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13478593--13478645	26	2.0	26	88	0	79	32	18	22	26	1.97
13478618--13479035	159	2.6	157	73	7	378	25	29	26	17	1.98
13479940--13479992	26	2.0	26	86	13	74	26	15	26	32	1.95
13480765--13480817	26	2.0	26	85	7	72	32	18	20	28	1.97
13481494--13481546	26	2.0	26	92	7	90	28	20	24	26	1.99
13481519--13481830	158	2.0	158	82	3	387	22	29	27	21	1.99
13481836--13481888	26	2.0	26	85	0	70	24	18	26	30	1.98
13489532--13490120	159	3.7	159	80	3	569	23	30	27	17	1.97
13489756--13490192	159	2.8	157	80	5	380	22	32	28	16	1.96
13490498--13490868	197	1.9	200	88	6	567	22	27	27	21	1.99
13490739--13490791	26	2.0	26	89	7	81	28	18	24	28	1.98
13493036--13493088	26	2.0	26	92	0	88	28	28	18	24	1.98
13492999--13493431	184	2.4	184	82	1	501	19	26	30	24	1.98
13493246--13493630	159	2.4	156	72	11	339	21	27	30	21	1.98
13493720--13493772	26	2.0	26	92	7	90	26	24	20	28	1.99
13494076--13494128	26	2.0	26	92	0	88	28	24	20	26	1.99
13493965--13494681	368	1.9	367	83	1	905	18	27	30	22	1.98
13494609--13494973	158	2.3	158	77	8	339	19	26	28	26	1.99
13494943--13494997	26	2.1	26	93	6	94	29	23	20	27	1.99
13495875--13495927	26	2.0	26	82	7	63	28	26	18	26	1.98
13496646--13496698	26	2.0	26	82	7	63	28	24	18	28	1.98
13503295--13503344	25	2.0	26	92	4	84	26	28	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13504159--13504211	26	2.0	26	88	0	79	28	26	18	26	1.98
13504945--13505503	158	3.6	155	78	10	500	18	26	29	25	1.98
13506212--13506655	159	2.8	159	75	8	422	19	27	28	23	1.98
13506188--13506785	157	3.8	156	72	12	443	19	28	29	22	1.98
13506758--13506810	26	2.0	26	92	7	90	26	26	20	26	1.99
13506444--13507191	341	2.2	339	86	2	1009	21	27	29	21	1.99
13506444--13507354	341	2.6	340	83	4	992	21	27	29	21	1.99
13508822--13508874	26	2.0	26	85	7	72	28	20	18	32	1.97
13509031--13509083	26	2.0	26	92	0	88	26	26	20	26	1.99
13510072--13510124	26	2.0	26	88	0	79	26	24	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138