Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  6  of  138  ( 16447 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1384197--1384250
28
1.9
28
88
7
83
7
5
5
81
0.98
1384196--1384278
28
3.0
26
78
15
78
10
7
4
77
1.12
1384399--1384478
21
3.8
21
83
5
72
36
6
7
50
1.56
1384419--1384485
21
3.1
21
85
10
84
34
7
8
49
1.62
1386421--1386460
9
4.4
9
80
0
53
30
7
2
60
1.38
1386529--1386590
5
11.8
5
77
16
63
35
3
1
59
1.23
1386529--1386635
3
37.3
3
83
12
118
31
1
3
62
1.23
1386529--1386631
43
2.4
42
86
4
134
32
1
3
62
1.25
1387512--1387588
19
4.2
19
74
17
63
19
2
2
75
1.04
1387669--1387702
14
2.5
14
90
4
52
79
0
11
8
0.94
1391935--1391969
9
3.8
9
85
7
52
77
0
11
11
1.00
1392837--1393055
115
1.9
115
79
1
242
23
23
12
40
1.89
1393517--1393678
3
57.7
3
80
12
157
33
1
4
61
1.24
1393604--1393681
5
14.8
5
78
15
61
32
2
2
62
1.22
1394544--1394591
5
9.2
5
78
17
53
20
2
2
75
1.02
1394544--1394591
12
4.6
10
78
17
53
20
2
2
75
1.02
1394683--1394730
20
2.4
21
82
10
64
77
2
12
8
1.08
1403385--1403435
23
2.2
25
83
13
65
50
0
0
49
1.00
1403388--1403486
51
1.9
51
81
4
119
52
1
2
44
1.19
1404777--1404808
2
16.0
2
100
0
64
50
0
0
50
1.00
1407265--1407403
71
2.0
71
88
0
206
22
25
17
34
1.95
1410689--1410725
2
18.5
2
88
0
56
45
0
5
48
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1421339--1421498
52
3.1
50
83
6
178
45
8
16
29
1.76
1421372--1421545
52
3.4
52
85
3
208
44
6
16
32
1.74
1425037--1425610
290
2.0
288
94
0
995
22
19
18
39
1.92
1441300--1441344
21
2.1
21
83
0
54
51
2
4
42
1.34
1441758--1441788
2
15.5
2
100
0
62
0
48
0
51
1.00
1457852--1457885
2
17.0
2
100
0
68
50
0
0
50
1.00
1459531--1459586
24
2.4
23
85
8
69
48
3
1
46
1.30
1459531--1459586
23
2.4
24
85
8
71
48
3
1
46
1.30
1462131--1462174
10
4.4
10
85
0
61
47
29
20
2
1.62
1473518--1473587
36
1.9
36
83
11
90
40
1
2
55
1.23
1473543--1473605
31
2.0
31
81
6
74
42
3
0
53
1.16
1493430--1493461
16
2.0
16
100
0
64
56
0
18
25
1.42
1494650--1494679
1
30.0
1
100
0
60
100
0
0
0
0.00
1495302--1495365
29
2.3
26
82
12
67
57
0
1
40
1.08
1510834--1510881
23
2.0
24
84
11
64
43
4
2
50
1.33
1515915--1515969
25
2.2
25
80
0
65
40
3
1
54
1.28
1519287--1519358
34
2.1
34
92
0
117
23
11
4
61
1.47
1519287--1519340
17
3.2
16
75
10
63
24
9
3
62
1.41
1519575--1519667
40
2.3
40
86
1
132
52
3
2
41
1.29
1519613--1519655
17
2.5
18
81
11
54
53
0
2
44
1.13
1526789--1526846
29
2.0
28
86
3
80
39
0
5
55
1.22
1526796--1526870
34
2.2
35
85
7
100
40
1
6
52
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1532049--1532080
15
2.0
17
88
11
50
21
37
28
12
1.90
1534525--1534555
15
2.0
16
93
6
55
19
12
19
48
1.81
1536583--1536643
27
2.3
27
97
0
113
36
13
14
36
1.85
1536583--1536652
27
2.6
27
90
0
104
32
14
15
37
1.88
1551532--1551623
45
2.0
45
93
0
157
36
7
17
38
1.78
1555056--1555109
25
2.1
26
89
3
83
24
3
1
70
1.13
1561829--1561864
15
2.4
15
100
0
72
13
0
0
86
0.58
1561825--1561862
7
5.4
7
90
9
60
13
0
0
86
0.56
1572880--1572905
9
2.9
9
100
0
52
46
0
0
53
1.00
1573007--1573049
14
3.0
15
83
6
54
51
0
0
48
1.00
1573168--1573211
15
2.9
15
74
12
54
59
4
2
34
1.30
1588833--1588891
31
1.9
30
83
10
75
44
6
1
47
1.39
1589204--1589243
18
2.2
18
100
0
80
30
10
22
37
1.87
1589875--1589952
32
2.4
33
77
14
90
37
0
2
60
1.11
1589883--1589944
31
2.0
30
84
9
81
32
0
3
64
1.09
1593631--1593703
27
2.6
28
77
12
78
53
1
1
43
1.17
1595457--1595544
43
2.0
44
97
2
169
29
7
20
42
1.80
1598918--1598957
19
2.1
19
86
9
55
47
0
5
47
1.24
1603614--1603650
17
2.2
17
95
0
65
43
13
21
21
1.87
1608149--1608211
25
2.5
25
73
17
58
49
1
0
49
1.10
1608203--1608229
3
9.0
3
100
0
54
66
0
0
33
0.92
1610403--1610428
2
13.0
2
100
0
52
50
0
50
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1617694--1617718
2
12.5
2
100
0
50
0
48
0
52
1.00
1617718--1617746
2
14.5
2
100
0
58
48
0
0
51
1.00
1625252--1625335
41
2.0
41
100
0
168
28
21
15
34
1.94
1626201--1626228
2
14.0
2
100
0
56
50
0
0
50
1.00
1626975--1627029
29
1.9
28
85
3
74
38
1
0
60
1.08
1627127--1627197
29
2.4
29
79
6
72
53
4
1
40
1.29
1636163--1636196
17
2.1
17
88
5
52
38
0
0
61
0.96
1639090--1639123
17
2.0
17
94
0
59
5
20
0
73
1.04
1643531--1643564
10
3.4
10
84
15
52
29
0
0
70
0.87
1643531--1643572
20
2.1
20
90
0
66
33
0
0
66
0.92
1643527--1643579
20
2.8
20
72
16
58
41
0
0
58
0.98
1643577--1643638
16
3.9
16
73
12
56
51
0
0
48
1.00
1643576--1643654
32
2.5
32
76
13
92
55
0
0
44
0.99
1643608--1643667
13
4.4
14
81
8
79
58
0
0
41
0.98
1645055--1645089
17
2.1
17
89
10
54
31
0
0
68
0.90
1645063--1645115
10
5.2
10
84
4
52
45
0
0
54
0.99
1647856--1647886
3
10.3
3
100
0
62
35
32
0
32
1.58
1649578--1649638
11
5.2
11
79
13
59
57
1
8
32
1.38
1649578--1649633
24
2.3
24
87
0
76
57
0
8
33
1.30
1650514--1650543
16
1.9
15
93
6
51
43
10
20
26
1.83
1652944--1652968
13
1.9
13
100
0
50
48
0
0
52
1.00
1654271--1654312
19
2.2
19
87
8
59
4
21
4
69
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1658796--1658864
23
3.1
23
77
6
61
63
1
0
34
1.03
1658796--1658864
22
3.1
22
75
6
59
63
1
0
34
1.03
1660073--1660105
16
2.1
16
88
5
50
63
0
6
30
1.18
1679272--1679306
15
2.2
16
90
5
54
31
0
0
68
0.90
1689194--1689227
18
1.9
18
94
5
61
76
17
0
5
0.98
1693403--1693576
93
1.9
93
97
0
330
48
6
0
44
1.29
1695479--1695513
16
2.1
16
89
5
52
54
2
5
37
1.39
1697142--1697200
27
2.2
27
96
0
109
20
20
23
35
1.96
1707850--1708412
287
2.0
287
90
1
887
33
7
20
38
1.82
1710436--1710531
48
2.0
48
97
0
183
28
18
19
33
1.96
1720995--1721021
14
1.9
14
100
0
54
51
0
11
37
1.37
1723315--1723365
25
2.0
25
88
0
75
27
5
21
45
1.75
1725878--1725909
7
4.6
7
96
0
55
78
0
0
21
0.76
1726003--1726034
16
2.0
16
93
0
55
34
0
0
65
0.93
1726338--1726378
21
2.1
19
86
9
55
48
7
0
43
1.30
1726678--1726712
17
2.1
17
100
0
70
28
22
17
31
1.96
1735301--1735330
5
6.0
5
100
0
60
60
0
0
40
0.97
1736744--1736871
60
2.1
60
97
0
238
36
20
21
21
1.95
1745763--1745792
6
5.0
6
91
0
51
30
33
20
16
1.94
1749833--1751131
372
3.5
370
85
2
1739
27
21
30
20
1.98
1751549--1751976
213
2.0
213
85
4
587
27
22
30
19
1.98
1756605--1756629
5
5.0
5
100
0
50
60
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1769815--1769855
15
2.7
15
88
0
64
39
2
19
39
1.65
1788617--1788661
21
2.1
22
87
4
65
31
6
2
60
1.35
1789536--1789584
22
2.2
23
89
7
75
42
0
0
57
0.99
1801663--1801716
25
2.2
25
86
6
74
9
18
14
57
1.64
1803113--1803213
52
2.0
52
88
2
150
29
9
6
53
1.60
1814820--1814876
26
2.2
26
87
0
78
52
1
10
35
1.46
1825497--1825653
52
3.0
52
81
5
185
25
22
8
43
1.82
1825678--1825709
11
2.9
11
95
0
55
46
28
0
25
1.53
1825958--1826026
25
2.8
25
77
2
77
20
36
10
33
1.86
1826583--1826739
52
3.0
51
86
3
206
24
21
9
43
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138