genome.fa.s124.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  88  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14708047--14708099	26	2.0	26	89	7	81	30	18	24	26	1.98
14709504--14709989	159	3.1	155	78	6	501	24	29	26	19	1.98
14709970--14710022	26	2.0	26	92	0	88	24	18	28	28	1.98
14710912--14710974	32	2.0	32	90	0	99	31	31	28	7	1.86
14711376--14711428	26	2.0	26	85	0	70	28	20	22	28	1.99
14711545--14712074	159	3.3	158	76	8	461	24	29	25	20	1.99
14712050--14712100	26	2.0	26	96	0	93	25	15	31	27	1.96
14712410--14712462	26	2.0	26	86	13	74	28	16	24	30	1.97
14712435--14713096	159	4.2	157	75	7	534	23	29	27	19	1.98
14713069--14713122	26	2.1	26	92	0	90	27	18	25	27	1.98
14713792--14713844	26	2.0	26	89	7	81	28	18	24	28	1.98
14714318--14714375	26	2.2	27	84	9	75	29	18	22	29	1.98
14713966--14715200	553	2.3	537	79	6	1231	24	28	26	21	1.99
14715372--14715424	26	2.0	26	96	0	97	24	20	28	26	1.99
14715752--14715804	26	2.0	26	85	7	72	26	18	26	28	1.98
14715777--14716194	159	2.6	159	78	5	423	24	28	27	18	1.98
14716755--14716808	26	2.1	26	89	6	83	25	18	27	27	1.98
14715732--14716876	499	2.3	498	80	3	1262	23	29	27	19	1.98
14717475--14717526	26	2.0	25	96	3	95	28	17	23	30	1.97
14718506--14718872	183	2.0	183	82	5	447	22	29	26	20	1.99
14718689--14719190	158	3.2	154	74	11	428	22	31	27	18	1.97
14719164--14719216	26	2.0	26	88	0	79	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14719189--14719555	171	2.2	170	78	7	377	23	29	25	20	1.99
14719715--14719767	26	2.0	26	92	0	88	24	18	28	28	1.98
14721120--14721172	26	2.0	26	89	7	81	30	22	20	26	1.98
14721145--14721524	158	2.4	159	81	4	430	23	30	26	19	1.98
14728577--14728629	26	2.0	26	96	0	97	24	20	28	26	1.99
14728786--14729897	524	2.1	523	83	1	1361	23	28	27	20	1.99
14729992--14730044	26	2.0	26	85	7	72	30	22	22	24	1.99
14730481--14731139	318	2.1	318	80	4	740	22	30	26	20	1.98
14730356--14730959	159	3.8	157	75	8	508	24	29	26	19	1.98
14732818--14732867	26	1.9	26	100	0	100	28	20	26	26	1.99
14733014--14733066	26	2.0	26	92	7	90	30	20	22	26	1.98
14733040--14733423	159	2.4	159	77	4	371	24	31	25	18	1.98
14734750--14734802	26	2.0	26	89	7	81	28	22	22	26	1.99
14735251--14735303	26	2.0	26	88	0	79	26	18	26	28	1.98
14735963--14736015	26	2.0	26	82	7	63	32	16	22	28	1.96
14736501--14736553	26	2.0	26	92	7	90	28	20	24	26	1.99
14736271--14736853	197	3.0	196	80	4	638	22	28	27	22	1.99
14737193--14737254	26	2.5	26	86	5	83	25	17	25	30	1.97
14738223--14738268	21	2.2	21	96	0	83	0	43	30	26	1.55
14738456--14738508	26	2.0	26	92	0	88	24	15	28	32	1.95
14738614--14739016	158	2.5	156	74	8	382	24	31	24	19	1.98
14739128--14739179	26	2.0	26	88	3	79	30	21	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14739218--14739243	13	2.0	13	100	0	52	15	15	53	15	1.73
14738246--14740713	684	3.6	672	77	6	2385	22	30	27	20	1.98
14739301--14739718	159	2.6	158	79	6	443	22	31	27	17	1.97
14739726--14740208	185	2.6	183	85	1	615	23	28	27	21	1.99
14740023--14740487	158	2.9	157	74	5	357	22	31	27	18	1.97
14740499--14740549	26	2.0	26	84	0	66	27	15	27	29	1.96
14746980--14747032	26	2.0	26	92	7	90	32	20	20	26	1.98
14747176--14747228	26	2.0	26	85	0	70	24	22	26	26	2.00
14747554--14747632	26	3.0	26	88	3	115	31	18	21	27	1.97
14748082--14748134	26	2.0	26	92	0	88	24	18	28	28	1.98
14748800--14748852	26	2.0	26	89	7	81	28	18	24	28	1.98
14748825--14749242	159	2.6	159	75	6	400	24	30	27	17	1.97
14749303--14749353	26	2.0	26	92	0	84	27	15	29	27	1.96
14749329--14749687	171	2.1	170	78	9	365	23	28	27	21	1.99
14749669--14749718	26	1.9	26	92	8	84	32	14	22	32	1.93
14750062--14750114	26	2.0	26	89	7	81	28	18	24	28	1.98
14751273--14751325	26	2.0	26	92	0	88	26	20	26	26	1.99
14749832--14751469	711	2.3	706	79	4	1777	24	28	25	21	1.99
14752155--14752207	26	2.0	26	92	0	88	24	15	28	32	1.95
14752888--14752939	26	2.0	25	88	3	77	28	21	21	28	1.98
14754083--14754158	26	3.1	26	79	20	92	30	17	25	27	1.97
14754603--14754655	26	2.0	26	92	7	90	28	20	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14755005--14755384	157	2.4	156	75	6	354	25	32	25	17	1.97
14755480--14755532	26	2.0	26	82	13	65	26	16	24	32	1.97
14756212--14756264	26	2.0	26	85	7	72	30	18	22	28	1.98
14756554--14756609	26	2.2	26	86	0	76	25	17	23	33	1.96
14756763--14756815	26	2.0	26	82	7	63	33	18	20	26	1.96
14757252--14757304	26	2.0	26	96	0	97	24	20	28	26	1.99
14758603--14758634	12	2.7	12	95	0	55	34	18	34	12	1.89
14758819--14758871	26	2.0	26	92	7	90	28	20	24	26	1.99
14759855--14759908	26	2.0	27	89	10	85	27	20	24	27	1.99
14760315--14760367	26	2.0	26	85	7	72	30	18	22	28	1.98
14760867--14760919	26	2.0	26	89	7	81	32	20	20	26	1.98
14761534--14761586	26	2.0	26	96	0	97	24	20	28	26	1.99
14760340--14762172	877	2.1	869	79	4	1965	24	28	26	20	1.99
14763115--14763165	26	2.0	26	88	7	77	31	13	25	29	1.94
14764179--14764231	26	2.0	26	89	7	81	24	16	28	30	1.97
14764022--14764575	185	3.0	183	75	7	494	24	28	25	21	1.99
14764389--14764797	159	2.6	159	74	9	375	24	28	26	20	1.99
14764864--14764916	26	2.0	26	88	0	79	28	20	24	26	1.99
14765795--14765847	26	2.0	26	92	7	90	28	20	24	26	1.99
14765820--14766324	158	3.2	157	75	9	429	22	29	27	20	1.98
14767579--14767628	25	2.0	26	92	4	84	26	18	26	30	1.98
14768324--14768825	158	3.2	158	77	5	422	22	30	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14768799--14768851	26	2.0	26	92	0	88	26	16	26	30	1.97
14769520--14769572	26	2.0	26	85	7	72	33	18	20	26	1.96
14769555--14769849	157	1.9	159	80	4	346	25	30	25	18	1.98
14769545--14770147	158	3.8	156	76	5	417	24	28	26	20	1.99
14770189--14770241	26	2.0	26	82	7	63	28	16	24	30	1.97
14771125--14771554	159	2.7	159	76	3	454	23	30	27	18	1.98
14771602--14771654	26	2.0	26	88	0	79	30	20	20	28	1.98
14771957--14772012	26	2.2	26	93	6	96	28	19	23	28	1.98
14771798--14772159	184	2.0	184	84	5	473	25	28	25	19	1.99
14773756--14773808	26	2.0	26	85	7	72	28	16	26	28	1.97
14774256--14774308	26	2.0	26	88	0	79	28	20	24	26	1.99
14775918--14776215	159	1.9	159	83	5	397	23	26	29	20	1.99
14778384--14778436	26	2.0	26	85	0	70	26	16	22	33	1.96
14778753--14778805	26	2.0	26	85	7	72	30	18	22	28	1.98
14778593--14778963	185	2.0	184	85	3	496	23	28	27	20	1.99
14778778--14779193	159	2.6	158	80	3	460	24	29	28	17	1.97
14778778--14779280	158	3.2	158	77	5	503	22	30	27	19	1.98
14779254--14779306	26	2.0	26	89	7	81	28	20	24	26	1.99
14784375--14784425	26	2.0	26	88	0	75	25	15	29	29	1.96
14784770--14785185	159	2.6	157	75	5	399	24	29	28	18	1.98
14791821--14791873	26	2.0	26	85	7	72	26	18	26	28	1.98
14792699--14792751	26	2.0	26	89	7	81	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14792724--14793085	156	2.3	156	79	6	390	24	28	26	20	1.99
14793902--14793952	26	2.0	26	92	7	86	29	17	21	31	1.96
14793928--14794427	158	3.2	157	76	7	422	22	28	29	19	1.98
14794439--14794967	158	3.3	158	74	6	446	23	29	27	19	1.98
14794085--14794769	342	2.0	342	83	3	860	22	28	28	19	1.98
14794559--14794994	159	2.8	154	72	12	368	24	28	27	19	1.98
14795924--14795976	26	2.0	26	92	0	88	26	13	28	32	1.93
14797513--14797565	26	2.0	26	89	7	81	28	18	24	28	1.98
14799445--14799494	26	2.0	25	92	4	82	30	18	24	28	1.97
14799943--14799995	26	2.0	26	89	7	81	28	18	26	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138