genome.fa.s124.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  132  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18805456--18805678	117	1.9	117	92	0	374	41	16	11	30	1.83
18805971--18806016	21	2.2	21	92	0	74	10	23	8	56	1.61
18810737--18810781	20	2.2	20	96	0	81	24	4	0	71	1.05
18811833--18811872	15	2.7	15	80	3	55	65	0	5	30	1.14
18812180--18812222	14	2.8	16	79	13	54	32	0	11	55	1.36
18813293--18813348	23	2.4	23	73	5	60	33	16	7	42	1.75
18814348--18814389	21	1.9	21	85	9	57	80	4	4	9	0.99
18815829--18815941	40	2.8	40	71	6	97	38	17	11	32	1.86
18816123--18816272	40	3.7	40	79	7	151	36	22	12	30	1.90
18816176--18816205	15	2.0	15	93	0	51	26	23	13	36	1.92
18816314--18816390	34	2.2	34	82	11	102	32	19	15	32	1.93
18816379--18816431	26	2.0	26	88	0	79	39	18	11	30	1.86
18816291--18816420	40	3.4	40	71	12	128	32	19	14	33	1.92
18816192--18816420	74	3.2	73	80	5	261	34	20	13	31	1.91
18816386--18816446	26	2.3	26	82	0	68	37	19	9	32	1.85
18817012--18817080	36	2.0	34	84	15	90	27	13	17	42	1.86
18817007--18817225	99	2.2	99	81	8	259	31	10	21	36	1.88
18817077--18817219	35	4.3	35	66	20	99	31	9	22	37	1.85
18819029--18819070	19	2.2	19	87	12	59	76	0	23	0	0.79
18819028--18819072	7	6.6	7	82	17	51	77	0	22	0	0.76
18819498--18819538	17	2.4	17	87	0	55	70	4	2	21	1.18
18819705--18819752	17	2.7	18	78	12	55	60	4	4	31	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18820332--18820510	89	2.0	89	82	5	218	43	12	8	35	1.74
18822460--18822497	8	4.8	8	87	12	51	81	0	0	18	0.69
18822461--18822499	9	4.6	9	96	3	64	84	0	0	15	0.62
18822461--18822500	17	2.3	18	91	4	64	85	0	0	15	0.61
18823219--18823252	7	4.9	7	96	0	59	76	0	8	14	1.01
18823917--18824140	40	5.5	39	74	15	161	38	18	10	33	1.84
18823947--18824140	80	2.4	80	82	6	207	39	17	10	32	1.83
18824209--18824380	40	4.3	40	79	2	193	36	16	13	33	1.88
18825044--18825138	39	2.4	41	80	8	124	34	15	14	34	1.89
18825041--18825257	40	5.4	40	76	3	159	34	16	13	35	1.88
18825241--18825324	32	2.5	34	80	3	91	42	15	10	30	1.81
18825273--18825342	34	2.1	34	83	0	86	38	17	14	30	1.89
18825706--18825740	18	2.0	17	88	5	52	77	0	20	2	0.90
18828388--18828428	17	2.4	17	87	0	55	70	4	2	21	1.18
18828594--18828641	17	2.7	18	78	12	55	60	4	2	33	1.27
18829223--18829398	89	2.0	89	84	2	228	42	14	9	33	1.79
18833534--18833561	2	14.0	2	100	0	56	50	0	0	50	1.00
18835697--18835724	2	14.0	2	100	0	56	50	0	0	50	1.00
18842858--18843079	10	22.5	10	67	14	61	52	6	0	39	1.34
18842849--18842893	21	2.1	21	88	8	65	64	6	0	28	1.19
18843156--18843504	9	36.3	9	66	16	116	51	5	2	40	1.37
18843156--18843409	10	26.5	10	67	20	59	51	5	1	40	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18843156--18843199	11	4.2	11	85	5	56	54	4	0	40	1.21
18843177--18843375	19	10.4	19	70	13	70	49	5	2	42	1.39
18843232--18843409	19	9.3	19	70	12	71	52	5	2	39	1.37
18843232--18843476	10	25.3	10	67	13	95	53	4	2	38	1.35
18843468--18843520	21	2.7	20	81	18	58	39	7	3	49	1.49
18843771--18843827	28	2.0	28	82	0	69	40	8	15	35	1.79
18844340--18844385	24	2.0	24	82	4	58	67	10	4	17	1.37
18846685--18846719	18	1.9	18	94	0	61	42	8	0	48	1.33
18846680--18846723	19	2.4	18	84	3	61	45	9	0	45	1.35
18846689--18846730	19	2.2	19	86	0	57	54	7	0	38	1.28
18846756--18847011	9	26.6	9	67	18	81	56	3	2	37	1.31
18846749--18846989	10	24.6	10	68	18	75	55	4	2	37	1.32
18846840--18846899	19	3.2	18	79	6	57	53	5	3	38	1.39
18846886--18846932	16	2.8	17	74	6	51	61	6	0	31	1.21
18846918--18846989	30	2.4	30	88	6	101	54	2	1	41	1.23
18847009--18847087	20	3.8	19	76	14	68	46	2	3	46	1.34
18847093--18847159	10	7.1	10	77	16	63	23	1	7	67	1.25
18847096--18847147	9	5.9	8	82	10	50	21	1	7	69	1.24
18847093--18847159	19	3.6	18	76	11	73	23	1	7	67	1.25
18847094--18847128	9	3.8	9	92	3	52	20	0	8	71	1.11
18847097--18847155	18	3.3	18	77	15	68	22	1	6	69	1.21
18858275--18858446	56	3.0	55	82	10	195	34	9	6	49	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18858414--18858553	66	2.1	68	84	8	178	35	10	6	48	1.62
18859646--18859935	42	7.0	41	79	7	289	44	21	10	23	1.82
18859636--18859928	124	2.4	125	81	6	335	45	20	10	23	1.82
18859640--18859935	83	3.5	83	82	5	339	44	20	10	23	1.82
18860935--18861027	9	10.0	9	83	11	91	5	10	2	81	0.93
18860982--18861027	13	3.5	13	82	8	58	2	8	4	84	0.83
18860936--18861028	14	6.6	13	70	21	64	5	9	2	82	0.90
18860936--18861029	19	5.1	18	76	8	73	5	9	2	82	0.89
18865987--18867084	558	2.0	560	91	1	1781	28	19	16	35	1.94
18868793--18868829	15	2.5	15	86	0	56	51	5	21	21	1.68
18872031--18872385	59	6.2	58	82	14	384	34	11	6	47	1.65
18872220--18872320	50	2.0	50	96	0	184	29	14	2	52	1.57
18872160--18872377	110	2.0	109	90	6	343	32	12	5	50	1.62
18872432--18872484	4	13.2	4	80	7	63	71	0	1	26	0.96
18873271--18873321	9	5.6	9	81	4	66	11	11	1	74	1.15
18873270--18873321	19	2.8	19	82	2	70	11	11	1	75	1.14
18875278--18875326	16	3.1	16	79	5	55	57	0	28	14	1.38
18877622--18877650	3	9.7	3	100	0	58	34	0	0	65	0.93
18890904--18890969	18	3.4	19	71	17	55	54	0	3	42	1.15
18890899--18890974	40	1.9	40	86	5	109	57	0	2	39	1.12
18891766--18892082	145	2.2	145	87	3	460	31	16	13	38	1.87
18892439--18892498	28	2.1	29	84	9	79	68	13	15	3	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18892737--18892778	19	2.2	20	83	12	52	16	14	21	47	1.82
18895466--18895513	3	15.7	3	91	4	78	64	0	2	33	1.05
18896970--18897016	20	2.3	20	85	7	60	2	19	2	76	0.99
18897262--18897434	86	2.0	86	93	0	292	35	16	14	33	1.89
18903946--18903995	13	3.8	13	73	19	50	26	2	18	54	1.54
18903933--18903996	26	2.5	26	87	7	96	23	4	18	53	1.64
18903933--18904004	26	2.8	25	81	8	83	22	4	20	52	1.63
18904095--18904139	22	2.2	21	84	11	58	31	0	2	66	1.04
18907966--18908041	8	9.6	8	69	13	50	19	0	3	76	0.94
18907975--18908006	7	4.4	7	96	4	55	25	0	3	71	1.00
18907966--18908032	14	4.4	14	75	17	71	17	0	4	77	0.93
18908016--18908054	18	2.2	19	81	13	55	28	0	0	71	0.86
18908016--18908054	8	4.3	10	81	18	50	28	0	0	71	0.86
18911967--18912014	23	2.1	23	84	7	62	14	27	6	52	1.66
18913237--18913633	68	5.9	68	83	8	476	38	14	12	34	1.84
18913269--18913633	134	2.7	131	86	7	468	39	14	12	34	1.83
18914817--18914866	22	2.3	21	79	3	55	8	10	2	80	0.99
18923323--18923361	20	1.9	21	84	5	53	12	20	2	64	1.40
18923624--18923656	16	2.1	16	88	5	50	36	30	9	24	1.86
18925046--18925098	19	2.8	20	77	8	58	28	1	18	50	1.57
18925123--18925250	26	4.9	26	71	9	100	15	4	35	43	1.68
18925139--18925221	19	4.6	19	73	14	77	14	4	36	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18925138--18925203	33	2.0	33	87	0	96	12	4	39	43	1.62
18929016--18929057	18	2.3	19	80	16	52	19	16	0	64	1.30
18929423--18929454	10	3.4	10	87	12	50	65	0	0	34	0.93
18938818--18938862	18	2.3	18	81	11	54	75	2	20	2	1.01
18939097--18939121	13	1.9	13	100	0	50	76	0	8	16	1.02
18939193--18939230	17	2.2	17	86	13	51	76	0	7	15	1.01
18940010--18940066	25	2.2	24	78	9	60	73	0	10	15	1.09
18940010--18940067	27	2.2	25	78	6	62	74	0	10	15	1.08
18940896--18940932	15	2.4	15	90	4	56	75	2	21	0	0.92
18940933--18940981	12	3.9	12	86	7	53	69	0	0	30	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138