Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  21  of  138  ( 16447 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5684436--5684546
57
1.9
57
87
0
159
25
12
10
51
1.72
5684563--5684635
33
2.2
33
82
0
92
28
15
15
41
1.87
5684625--5684683
24
2.5
23
83
8
73
16
13
28
40
1.87
5686305--5686352
20
2.4
21
80
13
57
20
6
2
70
1.19
5686534--5686582
25
2.0
25
84
15
66
69
0
6
24
1.11
5686567--5686609
11
4.1
10
82
8
50
81
0
4
13
0.84
5687411--5687440
6
5.0
6
91
0
51
80
0
3
16
0.85
5687974--5688018
23
2.0
23
82
8
56
53
8
4
33
1.52
5688761--5688800
19
2.1
19
100
0
80
22
10
15
52
1.71
5689052--5689077
2
13.0
2
100
0
52
50
0
0
50
1.00
5690123--5690167
18
2.6
18
80
19
51
48
2
4
44
1.35
5690247--5690278
17
1.9
16
93
6
55
34
0
0
65
0.93
5690914--5690939
6
4.3
6
100
0
52
84
0
0
15
0.62
5704693--5704736
2
22.0
2
100
0
88
0
50
0
50
1.00
5711354--5711401
25
1.9
25
95
0
87
43
4
20
31
1.71
5713161--5713196
8
4.5
8
92
0
54
86
2
0
11
0.68
5713936--5713987
17
3.1
18
78
13
58
78
3
0
17
0.89
5713940--5713994
26
2.2
26
87
9
78
78
1
0
20
0.85
5713943--5713994
8
6.5
8
85
10
63
76
1
0
21
0.87
5713759--5714162
219
1.9
215
83
6
528
48
6
9
35
1.63
5720402--5720461
18
3.2
18
77
13
59
73
0
20
6
1.05
5721845--5721948
43
2.4
43
79
10
122
36
11
18
33
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5722223--5722924
42
17.1
41
82
5
651
26
14
20
37
1.92
5722223--5722817
83
7.3
82
81
9
666
27
15
20
37
1.92
5722226--5722817
206
2.9
202
85
5
732
27
15
20
37
1.92
5722690--5722764
36
2.1
36
84
0
96
25
14
25
34
1.94
5722830--5722978
42
3.5
42
87
1
210
24
12
19
44
1.84
5723118--5723158
18
2.3
18
82
0
55
82
2
2
12
0.86
5723903--5723950
8
5.8
8
83
9
51
77
2
0
20
0.88
5723902--5723950
17
2.9
18
79
11
59
75
4
0
20
0.96
5733336--5733407
29
2.4
30
81
6
85
33
4
1
61
1.24
5733332--5733406
30
2.5
31
79
12
86
33
4
1
61
1.23
5733826--5733869
3
14.7
3
100
0
88
31
0
0
68
0.90
5734186--5734235
23
2.2
22
78
3
55
14
4
32
50
1.61
5734211--5734256
15
3.1
15
87
0
65
17
6
28
47
1.72
5734248--5734422
86
2.0
87
90
3
273
32
4
16
46
1.67
5734695--5734780
36
2.4
35
77
9
84
15
5
4
74
1.17
5734763--5734806
18
2.4
18
85
7
54
22
2
0
75
0.92
5745322--5745346
12
2.1
12
100
0
50
84
8
0
8
0.79
5746072--5746195
60
2.1
59
80
1
140
26
26
8
37
1.86
5746910--5746960
3
17.3
3
95
4
95
31
0
0
68
0.90
5747251--5747293
15
2.9
15
86
3
61
23
4
20
51
1.66
5747269--5747322
20
2.6
21
85
8
67
24
5
20
50
1.69
5747651--5747693
14
3.4
14
75
24
58
13
4
0
81
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5747649--5747731
6
14.3
6
70
17
52
15
4
1
78
0.98
5747650--5747737
24
3.8
22
78
15
88
17
5
1
76
1.04
5749180--5749240
30
2.0
30
83
0
77
54
1
9
34
1.44
5756699--5756797
24
4.1
24
70
16
71
44
3
0
52
1.16
5759640--5759673
12
2.8
12
90
0
50
64
0
2
32
1.08
5761751--5761787
6
6.2
6
87
0
56
51
0
0
48
1.00
5762339--5762363
2
12.5
2
100
0
50
48
0
0
52
1.00
5773362--5773390
2
15.0
2
92
7
51
51
0
0
48
1.00
5775666--5775715
22
2.3
21
89
3
73
16
26
26
32
1.96
5780019--5780065
22
2.2
22
85
7
62
72
8
17
2
1.19
5783583--5783626
12
3.7
12
87
0
70
38
0
11
50
1.39
5783586--5783626
14
2.9
14
85
0
55
36
0
12
51
1.40
5784044--5784070
13
2.1
13
100
0
54
22
14
22
40
1.90
5785936--5785965
2
15.0
2
92
0
51
46
0
3
50
1.18
5788981--5789026
21
2.1
23
88
8
69
34
2
2
60
1.21
5790546--5790623
24
3.4
22
72
13
68
57
0
2
39
1.12
5790541--5790605
28
2.5
25
80
16
71
55
0
3
41
1.15
5792756--5792936
97
1.9
97
83
4
240
40
7
9
41
1.67
5792926--5792957
16
1.9
17
93
6
57
50
0
0
50
1.00
5796875--5797100
95
2.4
96
88
4
341
36
7
11
43
1.70
5797219--5797288
21
3.3
19
73
22
59
52
7
5
34
1.52
5797255--5797294
20
2.0
21
85
5
55
45
12
12
30
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5797218--5797312
45
2.1
44
82
5
111
52
7
8
31
1.59
5797354--5797423
21
3.4
20
77
13
63
74
0
4
21
0.99
5800498--5800540
19
2.3
19
84
8
52
4
9
2
83
0.87
5800854--5800903
24
2.1
24
88
0
73
6
18
0
76
0.99
5800855--5800901
11
4.0
12
76
13
53
2
19
0
78
0.85
5806547--5806761
95
2.3
94
90
4
335
33
6
13
46
1.68
5806611--5806803
95
2.0
94
83
8
239
38
6
11
43
1.66
5806893--5806944
20
2.7
20
93
3
88
55
5
0
38
1.24
5806911--5806962
25
2.1
25
85
7
70
53
7
1
36
1.41
5807045--5807088
3
14.7
3
100
0
88
68
0
0
31
0.90
5813672--5813735
10
5.8
10
78
20
56
26
1
0
71
0.94
5814158--5814281
65
2.0
65
84
7
166
54
8
8
29
1.59
5819673--5819711
4
10.0
4
83
5
53
23
5
0
71
1.05
5821050--5821089
16
2.5
16
84
11
55
22
5
2
70
1.19
5823857--5823896
19
2.3
16
84
16
53
80
7
7
5
1.03
5823858--5823896
17
2.2
18
90
9
62
82
5
7
5
0.96
5824383--5824407
13
1.9
13
100
0
50
48
24
20
8
1.76
5825173--5825304
53
2.5
55
78
7
148
30
15
11
42
1.83
5825223--5825299
36
2.1
36
82
0
91
27
15
11
45
1.81
5825183--5825323
17
8.1
17
70
9
70
29
17
11
41
1.84
5825424--5825472
18
2.5
20
83
9
66
36
20
8
34
1.82
5831420--5831463
18
2.5
17
82
13
54
34
2
4
59
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5831903--5831940
15
2.6
15
87
4
51
0
31
2
65
1.06
5833734--5833786
22
2.5
23
77
22
62
41
0
3
54
1.18
5833732--5833786
21
2.5
23
82
14
71
41
0
3
54
1.18
5834052--5834086
17
1.9
19
88
11
56
51
5
2
40
1.40
5834222--5834248
2
13.5
2
100
0
54
48
0
0
51
1.00
5835620--5835652
17
1.9
17
93
0
57
9
0
21
69
1.15
5839415--5839474
24
2.5
24
81
2
68
53
6
5
35
1.49
5841753--5841803
20
2.5
19
84
15
59
62
9
5
21
1.47
5843768--5843792
13
1.9
13
100
0
50
48
0
4
48
1.20
5843907--5843940
13
2.5
14
95
4
61
50
2
14
32
1.58
5846635--5846686
22
2.3
22
80
9
61
65
1
0
32
1.04
5846820--5846868
21
2.2
23
82
13
59
26
2
4
67
1.19
5847874--5847905
6
5.3
6
100
0
64
50
15
34
0
1.45
5851544--5851835
144
2.0
144
84
0
377
39
15
19
25
1.91
5863485--5863525
19
2.2
19
100
0
82
26
17
19
36
1.94
5864176--5864230
28
2.0
28
82
7
67
47
5
0
47
1.25
5868370--5868420
23
2.2
23
79
6
59
23
3
3
68
1.23
5881977--5882008
11
2.9
11
100
0
64
25
46
9
18
1.79
5883405--5883446
18
2.2
20
83
8
52
57
4
4
33
1.41
5884498--5884578
42
2.0
41
82
2
99
46
1
1
50
1.17
5884900--5884932
17
1.9
17
88
11
50
18
6
9
66
1.40
5887531--5887570
12
3.4
12
86
3
55
57
0
2
40
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5887578--5887640
27
2.4
27
84
7
76
53
1
3
41
1.26
5890268--5890551
9
29.7
9
68
16
110
54
6
1
36
1.37
5890395--5890510
30
3.8
31
72
15
91
52
7
0
38
1.36
5890105--5890550
19
22.2
19
66
16
118
56
6
2
35
1.37
5890567--5890605
11
3.5
11
85
0
51
43
5
0
51
1.24
5890611--5890665
16
3.3
16
78
9
65
32
0
0
67
0.91
5890616--5890665
18
2.9
18
79
11
59
32
0
0
68
0.90
5890616--5890659
8
5.2
8
78
10
52
29
0
0
70
0.88
5890723--5890789
20
3.3
19
77
10
62
34
4
4
56
1.39
5890732--5890790
21
2.8
20
78
12
57
38
5
5
50
1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138