genome.fa.s124.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  111  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16559151--16559217	26	2.6	26	85	0	89	28	26	19	25	1.99
16559881--16559934	26	2.1	26	89	0	81	27	24	20	27	1.99
16560385--16560437	26	2.0	26	86	13	74	30	24	16	28	1.97
16560282--16560802	196	2.7	196	82	3	611	22	26	26	23	2.00
16560646--16560963	171	1.9	171	79	2	370	19	26	30	23	1.98
16560949--16561001	26	2.0	26	88	0	79	30	26	18	24	1.98
16561289--16561341	26	2.0	26	92	0	88	28	28	18	24	1.98
16561441--16561817	158	2.4	159	77	4	375	19	25	28	26	1.98
16561793--16561842	26	1.9	26	88	8	75	26	22	18	34	1.96
16562171--16562223	26	2.0	26	85	7	72	32	28	15	24	1.95
16562335--16562701	160	2.3	160	80	6	413	20	25	29	25	1.99
16562233--16562700	159	2.9	156	78	6	449	20	25	30	23	1.99
16562674--16562726	26	2.0	26	89	7	81	28	18	20	32	1.97
16563019--16563071	26	2.0	26	85	0	70	26	22	18	32	1.97
16563146--16563578	158	2.7	158	73	6	374	18	27	29	24	1.98
16563690--16563740	26	2.0	26	96	0	93	25	29	19	25	1.99
16564059--16564108	26	1.9	26	91	0	82	26	28	20	26	1.99
16564744--16564793	26	1.9	26	87	0	73	26	24	18	32	1.97
16564912--16565271	159	2.3	160	78	4	395	18	28	30	23	1.98
16563713--16565270	686	2.3	682	81	4	1830	19	26	29	24	1.98
16565243--16565295	26	2.0	26	89	7	81	26	20	20	32	1.98
16565964--16566016	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16566418--16566470	26	2.0	26	92	7	90	26	24	20	28	1.99
16567137--16567189	26	2.0	26	96	0	97	26	28	20	24	1.99
16567308--16567360	26	2.0	26	85	7	72	28	26	18	26	1.98
16568030--16568082	26	2.0	26	88	0	79	28	26	18	26	1.98
16568056--16568545	159	3.1	153	74	11	357	18	26	30	23	1.98
16568896--16568948	26	2.0	26	88	0	79	33	28	15	22	1.94
16569818--16569870	26	2.0	26	89	7	81	26	22	20	30	1.98
16570541--16570593	26	2.0	26	88	0	79	28	26	16	28	1.97
16571023--16571073	26	2.0	25	84	3	66	31	21	15	31	1.95
16571371--16571423	26	2.0	26	89	7	81	28	26	18	26	1.98
16572057--16572109	26	2.0	26	92	0	88	28	28	18	24	1.98
16571137--16572585	685	2.1	672	81	4	1676	19	26	28	24	1.99
16572875--16572900	13	2.0	13	100	0	52	7	46	23	23	1.78
16573440--16573492	26	2.0	26	82	13	65	30	22	16	30	1.96
16571839--16574358	882	2.9	878	84	2	3081	21	26	27	24	1.99
16573807--16573859	26	2.0	26	88	0	79	28	30	18	22	1.98
16573841--16574330	156	3.1	157	75	7	449	20	26	29	23	1.99
16575585--16576077	159	3.1	156	75	5	461	19	26	30	24	1.98
16578780--16578832	26	2.0	26	88	0	79	30	26	18	24	1.98
16578863--16580258	159	8.8	159	74	6	1112	18	27	29	23	1.98
16578806--16580258	317	4.6	314	83	2	1597	19	27	29	23	1.98
16578806--16580258	633	2.3	632	82	3	1765	19	27	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16580231--16580283	26	2.0	26	92	7	90	26	22	20	30	1.98
16580921--16580971	26	2.0	26	92	0	84	31	21	17	29	1.96
16580952--16581445	158	3.1	158	75	5	496	19	25	29	24	1.98
16581261--16581630	184	2.0	184	83	2	465	21	28	27	22	1.99
16582129--16582181	26	2.0	26	89	7	81	26	22	20	30	1.98
16582708--16582759	26	2.0	26	85	7	70	28	23	17	30	1.97
16583075--16583127	26	2.0	26	92	0	88	28	28	18	24	1.98
16583153--16583604	159	2.8	159	77	6	414	20	28	29	21	1.98
16583101--16583602	158	3.2	158	75	5	483	20	28	29	21	1.98
16583576--16583628	26	2.0	26	92	7	90	30	24	16	28	1.97
16583773--16583825	26	2.0	26	88	0	79	30	28	16	24	1.97
16584115--16584167	26	2.0	26	89	7	81	26	22	20	30	1.98
16584863--16585364	158	3.2	157	73	7	460	19	26	29	23	1.98
16586569--16586620	25	2.0	26	88	3	79	30	21	17	30	1.96
16586910--16586962	26	2.0	26	96	0	97	26	28	20	24	1.99
16586751--16587121	184	2.0	185	81	6	432	21	27	28	23	1.99
16586519--16587284	343	2.2	342	84	4	965	20	27	28	24	1.99
16587883--16587935	26	2.0	26	92	0	88	26	28	22	22	1.99
16588788--16588840	26	2.0	26	89	7	81	28	26	18	26	1.98
16588814--16589315	158	3.2	158	76	5	494	23	26	27	22	2.00
16589289--16589341	26	2.0	26	85	7	72	28	26	18	26	1.98
16590194--16590246	26	2.0	26	96	0	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16590390--16590442	26	2.0	26	82	7	63	26	18	20	33	1.96
16596794--16596910	59	2.0	59	83	6	148	17	29	32	21	1.96
16598019--16598097	26	3.0	26	86	0	113	26	29	18	25	1.98
16598134--16598890	159	4.8	158	72	6	451	19	28	29	23	1.98
16598071--16598890	317	2.6	317	81	1	928	19	27	29	23	1.98
16598071--16598888	158	5.2	157	72	7	596	19	27	29	23	1.98
16598863--16598915	26	2.0	26	89	7	81	24	24	22	28	2.00
16600260--16600312	26	2.0	26	92	7	90	26	24	20	28	1.99
16602536--16602588	26	2.0	26	92	0	88	24	28	22	24	2.00
16601620--16603527	898	2.1	898	97	0	3636	20	26	28	24	1.99
16603434--16603486	26	2.0	26	96	0	97	26	28	20	24	1.99
16603508--16603539	12	2.7	12	100	0	64	34	28	31	6	1.82
16605004--16605028	9	2.8	9	100	0	50	24	36	12	28	1.91
16607643--16607695	26	2.0	26	92	7	90	26	26	20	26	1.99
16607975--16608024	26	1.9	26	88	8	75	30	24	14	32	1.94
16609681--16609758	26	3.0	26	86	0	102	30	28	17	23	1.97
16610270--16610322	26	2.0	26	100	0	106	30	30	16	22	1.96
16610774--16610826	26	2.0	26	92	0	88	26	26	20	26	1.99
16611269--16611321	26	2.0	26	82	7	63	30	22	16	30	1.96
16611478--16611530	26	2.0	26	89	7	81	26	24	20	28	1.99
16611504--16612006	159	3.2	157	77	5	474	21	26	28	23	1.99
16610748--16612216	704	2.1	702	79	6	1563	22	25	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16612476--16612528	26	2.0	26	89	7	81	28	26	15	30	1.96
16613234--16613589	159	2.2	158	74	8	337	20	26	28	23	1.99
16613702--16613754	26	2.0	26	85	7	72	28	20	20	30	1.98
16613764--16613816	26	2.0	26	96	0	97	24	18	41	15	1.89
16614109--16614161	26	2.0	26	92	0	88	28	28	18	24	1.98
16614187--16614635	158	2.9	159	76	6	405	21	26	28	24	1.99
16614608--16614659	26	2.0	26	92	7	88	26	23	19	30	1.98
16614457--16615001	184	3.0	182	80	4	524	22	26	26	24	2.00
16615293--16615344	26	2.0	26	85	7	70	26	21	21	30	1.98
16614633--16615864	514	2.4	498	79	6	1314	20	26	29	23	1.99
16615806--16615858	26	2.0	26	96	0	97	28	30	18	22	1.98
16615918--16615983	26	2.5	26	90	4	98	28	30	16	24	1.97
16615800--16616054	125	2.0	126	92	0	422	25	23	29	22	1.99
16616128--16616180	26	2.0	26	92	7	90	26	22	20	30	1.98
16617131--16617509	159	2.4	157	78	2	416	20	26	30	22	1.99
16618307--16618359	26	2.0	26	82	13	65	30	26	15	28	1.96
16619172--16619222	26	2.0	26	88	7	77	29	23	15	31	1.95
16619371--16619421	26	2.0	26	92	3	86	29	29	17	23	1.97
16621137--16621187	26	2.0	26	88	7	77	27	21	21	29	1.99
16621566--16622071	196	2.6	196	86	1	674	21	27	28	22	1.99
16620912--16622173	540	2.3	537	81	7	1288	22	25	28	23	1.99
16623249--16623298	26	1.9	26	84	8	66	28	22	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16623716--16623767	26	2.0	26	85	7	70	34	25	11	28	1.91
16623803--16624409	157	3.8	158	76	6	586	18	28	30	21	1.97
16624385--16624435	26	2.0	26	88	0	75	29	25	15	29	1.96
16625153--16625205	26	2.0	26	96	0	97	28	22	20	28	1.99
16625530--16625583	26	2.1	26	82	6	65	22	22	25	29	1.99
16626035--16626087	26	2.0	26	92	7	90	32	22	16	28	1.96
16626352--16626379	13	2.2	13	100	0	56	7	53	25	14	1.66
16626416--16626468	26	2.0	26	92	7	90	26	26	20	26	1.99
16626442--16626806	159	2.3	158	77	7	373	21	27	29	21	1.99
16624772--16626972	883	2.5	877	80	4	2517	20	27	28	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138