genome.fa.s124.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  78  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13965947--13965997	25	2.0	25	88	0	75	25	17	25	31	1.97
13966282--13966336	26	2.1	26	96	0	101	14	41	21	21	1.89
13966446--13967279	158	5.3	156	74	8	600	23	30	26	19	1.98
13967256--13967360	26	4.1	25	77	10	104	28	20	24	26	1.99
13967256--13967360	52	2.0	50	82	8	122	28	20	24	26	1.99
13967337--13967757	157	2.7	159	77	8	403	23	29	28	18	1.98
13967805--13967857	26	2.0	26	85	0	70	26	16	26	30	1.97
13968525--13968577	26	2.0	26	85	7	72	32	20	20	26	1.98
13968551--13968852	159	1.9	159	82	2	374	23	30	27	18	1.98
13968719--13968991	148	1.9	146	82	4	343	23	31	28	16	1.96
13969948--13970446	159	3.2	158	74	5	434	24	29	26	20	1.99
13971176--13971764	158	3.7	157	77	6	544	23	30	27	17	1.97
13971176--13971764	317	1.9	317	81	5	715	23	30	27	17	1.97
13971176--13971829	159	4.1	156	75	6	503	23	30	26	19	1.98
13972103--13972525	196	2.2	196	83	5	525	23	28	25	22	1.99
13972866--13972918	26	2.0	26	86	13	74	26	18	28	26	1.98
13979542--13980043	158	3.2	157	73	9	446	23	31	25	19	1.98
13980017--13980069	26	2.0	26	92	7	90	26	20	26	26	1.99
13980044--13980696	342	1.9	342	83	4	834	24	29	26	19	1.98
13980226--13981401	524	2.2	531	82	4	1462	23	28	26	20	1.99
13980901--13981291	171	2.3	170	79	5	466	23	30	25	20	1.98
13981798--13981828	12	2.6	12	100	0	62	16	35	16	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13981852--13981904	26	2.0	26	89	7	81	26	18	26	28	1.98
13982550--13982950	159	2.5	158	74	6	382	23	26	28	20	1.99
13983748--13983800	26	2.0	26	85	7	72	30	18	24	26	1.98
13983932--13983984	26	2.0	26	85	0	70	28	18	24	28	1.98
13984312--13984364	26	2.0	26	85	7	72	33	16	20	28	1.95
13984812--13984863	26	2.0	26	96	0	95	26	17	26	28	1.97
13985009--13985059	26	2.0	26	92	0	84	27	17	29	25	1.98
13984725--13985095	196	1.9	196	87	2	548	25	27	26	20	1.99
13985045--13985361	171	1.9	171	79	1	366	23	31	25	19	1.98
13985391--13985441	26	2.0	26	96	0	93	37	17	15	29	1.91
13986076--13986128	26	2.0	26	89	7	81	28	18	24	28	1.98
13986882--13986934	26	2.0	26	89	7	81	28	18	24	28	1.98
13987222--13987274	26	2.0	26	85	0	70	28	18	26	26	1.98
13987933--13987985	26	2.0	26	96	0	97	24	20	28	26	1.99
13987774--13988326	184	3.0	183	78	4	605	25	28	25	20	1.99
13988611--13988669	26	2.3	26	85	5	77	25	18	27	28	1.98
13990191--13990243	26	2.0	26	92	7	90	28	20	24	26	1.99
13990731--13990782	25	2.0	26	89	10	81	30	17	23	28	1.97
13992079--13992131	26	2.0	26	92	7	90	28	20	24	26	1.99
13992262--13992314	26	2.0	26	86	13	74	30	16	22	30	1.96
13992017--13992726	377	1.9	382	84	6	972	23	28	24	23	1.99
13992241--13992742	194	2.6	194	80	6	552	25	27	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13992651--13992703	26	2.0	26	89	7	81	28	15	24	32	1.95
13991908--13992794	195	4.6	193	76	10	742	24	28	25	21	1.99
13992994--13993047	26	2.0	27	89	3	83	25	18	27	27	1.98
13993752--13994244	159	3.1	157	75	5	420	23	30	26	19	1.98
13994264--13994714	171	2.6	170	83	3	557	23	29	27	19	1.98
13994264--13994782	171	3.0	168	77	6	528	22	29	26	21	1.99
13994756--13994808	26	2.0	26	85	7	72	26	20	24	28	1.99
13994781--13995227	159	2.8	157	74	7	409	23	29	27	19	1.98
13995255--13995300	24	1.9	24	91	8	76	32	17	21	28	1.96
13995975--13996027	26	2.0	26	92	7	90	28	20	24	26	1.99
13996000--13996502	158	3.2	158	77	6	435	23	30	26	19	1.98
13996476--13996528	26	2.0	26	92	0	88	24	18	28	28	1.98
14002808--14002858	26	2.0	26	88	0	75	25	15	27	31	1.96
14004031--14004083	26	2.0	26	92	0	88	28	18	24	28	1.98
14003874--14004271	180	2.2	182	81	5	473	24	26	26	22	2.00
14004211--14004263	26	2.0	26	89	7	81	30	18	22	28	1.98
14004236--14004683	159	2.8	159	76	4	420	22	30	27	18	1.98
14004680--14004705	13	2.0	13	100	0	52	15	30	15	38	1.88
14005999--14006392	159	2.5	158	82	4	463	23	30	28	18	1.97
14005739--14007038	661	2.0	661	82	2	1617	24	29	27	18	1.98
14006661--14007162	158	3.2	156	73	7	429	22	29	28	19	1.98
14008004--14008056	26	2.0	26	85	0	70	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14008752--14009214	158	2.9	155	76	9	459	21	31	27	19	1.97
14009227--14009278	25	2.0	26	92	3	88	25	19	26	28	1.98
14009634--14010017	159	2.4	158	81	2	432	25	29	25	19	1.98
14010105--14010157	26	2.0	26	82	13	65	30	16	22	30	1.96
14010130--14010473	159	2.2	159	80	3	372	24	29	26	20	1.99
14010447--14010499	26	2.0	26	92	0	88	24	18	28	28	1.98
14010073--14010876	342	2.3	343	80	5	864	24	28	25	20	1.99
14012508--14013125	159	3.9	157	80	2	648	22	31	28	18	1.97
14013489--14013540	26	2.0	26	84	0	68	28	19	23	28	1.98
14021175--14021227	26	2.0	26	89	7	81	28	18	24	28	1.98
14020979--14022336	501	2.7	498	82	4	1553	24	28	25	20	1.99
14022177--14022229	26	2.0	26	85	7	72	26	16	26	30	1.97
14022543--14022600	26	2.2	27	87	9	84	27	18	24	29	1.98
14022568--14023079	158	3.2	156	74	6	399	23	28	27	20	1.99
14024483--14024838	188	1.9	186	79	4	405	26	29	24	19	1.99
14025137--14025189	26	2.0	26	85	7	72	26	16	28	28	1.97
14025857--14025912	26	2.2	26	87	6	78	30	17	23	28	1.97
14026422--14026474	26	2.0	26	88	0	79	32	18	20	28	1.97
14026447--14026802	159	2.2	159	79	6	391	26	30	24	18	1.98
14026920--14026972	26	2.0	26	88	0	79	26	18	26	28	1.98
14027641--14027693	26	2.0	26	89	7	81	30	20	22	26	1.98
14028507--14028559	26	2.0	26	92	7	90	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14029007--14029059	26	2.0	26	92	0	88	24	18	28	28	1.98
14028702--14029470	339	2.3	343	83	1	927	23	28	28	19	1.98
14030594--14030646	26	2.0	26	85	7	72	26	18	24	30	1.98
14030778--14030830	26	2.0	26	88	0	79	26	20	24	28	1.99
14031676--14031728	26	2.0	26	92	0	88	24	18	28	28	1.98
14032029--14032081	26	2.0	26	92	7	90	28	20	24	26	1.99
14031859--14032372	195	2.6	196	88	2	732	25	28	26	19	1.99
14032249--14032628	160	2.4	157	76	6	365	24	28	26	20	1.99
14033447--14033792	159	2.2	158	76	8	344	24	30	25	18	1.98
14033766--14033818	26	2.0	26	92	0	88	26	20	26	26	1.99
14033449--14034188	343	2.2	343	85	1	962	24	28	27	20	1.99
14035150--14035203	26	2.1	26	92	0	90	27	22	25	24	2.00
14035357--14035409	26	2.0	26	96	0	97	26	20	24	28	1.99
14035383--14035884	158	3.2	156	73	7	433	22	30	25	21	1.99
14035896--14036246	171	2.1	170	80	6	388	23	30	27	18	1.98
14035672--14036342	368	1.9	355	82	5	853	23	29	27	18	1.98
14036194--14036805	184	3.3	183	86	2	762	24	29	24	20	1.99
14036619--14037037	159	2.6	157	77	6	409	24	29	27	19	1.98
14037610--14037660	26	2.0	26	92	0	84	31	19	21	27	1.97
14038106--14038158	26	2.0	26	88	0	79	26	22	28	22	1.99
14038820--14038871	26	2.0	26	88	7	79	30	15	23	30	1.95
14039002--14039054	26	2.0	26	92	0	88	24	18	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14039028--14040010	157	6.2	158	73	8	589	24	29	25	20	1.99
14039984--14040036	26	2.0	26	92	0	88	28	18	24	28	1.98
14040689--14040741	26	2.0	26	89	7	81	28	18	24	28	1.98
14040872--14040924	26	2.0	26	89	7	81	26	18	26	28	1.98
14041036--14041343	158	1.9	158	80	6	347	22	28	29	19	1.98
14041384--14041433	26	1.9	26	92	8	84	32	20	24	24	1.98
14041711--14041763	26	2.0	26	96	0	97	26	18	26	28	1.98
14042777--14042829	26	2.0	26	85	7	72	30	18	22	28	1.98
14043510--14043856	159	2.2	159	77	4	360	23	28	27	20	1.99
14043830--14043882	26	2.0	26	85	7	72	28	18	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138