genome.fa.s124.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  16  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4545083--4545130	12	3.9	12	80	2	51	39	0	0	60	0.97
4545083--4545130	18	2.6	18	86	3	69	39	0	0	60	0.97
4545194--4545226	16	2.0	17	88	5	50	30	6	0	63	1.18
4545170--4545234	25	2.7	23	72	9	58	36	3	0	60	1.13
4549674--4549742	12	5.7	12	73	8	50	62	0	0	37	0.96
4552124--4552157	9	3.7	9	84	7	50	23	0	0	76	0.79
4552121--4552160	19	2.1	19	100	0	80	27	0	0	72	0.85
4557860--4557909	23	2.1	23	82	14	57	46	10	12	32	1.74
4560256--4560296	11	3.6	11	90	3	55	17	0	4	78	0.93
4561278--4561329	20	2.7	19	88	5	77	57	0	5	36	1.23
4561294--4561335	19	2.3	17	88	12	57	66	0	4	28	1.12
4561326--4561357	15	2.1	15	94	0	55	68	0	0	31	0.90
4561433--4561471	18	2.1	19	85	4	53	53	0	2	43	1.14
4561563--4561588	2	13.0	2	100	0	52	50	0	0	50	1.00
4564173--4564337	76	2.1	77	89	2	251	40	4	13	41	1.65
4564630--4564697	34	2.1	32	86	10	93	35	19	5	39	1.76
4581448--4581937	240	2.1	235	91	4	799	8	30	10	51	1.64
4583968--4584010	11	3.8	11	82	11	52	23	4	0	72	1.04
4584626--4584661	19	1.9	18	88	5	54	22	0	0	77	0.76
4585856--4585888	17	1.9	17	93	0	57	6	15	51	27	1.66
4585926--4585978	23	2.4	22	78	12	54	35	3	1	58	1.27
4586138--4586179	12	3.2	13	86	13	59	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4586585--4586886	145	2.1	144	78	10	312	46	1	6	44	1.40
4586986--4587019	12	2.8	12	90	4	50	38	0	0	61	0.96
4586970--4587028	23	2.6	23	73	7	57	35	1	3	59	1.24
4588177--4588239	33	1.9	33	90	6	101	3	31	4	60	1.33
4591523--4591612	46	2.0	46	90	0	144	37	12	30	20	1.89
4601961--4601998	18	2.2	18	86	9	53	42	0	5	52	1.24
4604810--4604846	3	12.3	3	94	0	65	35	0	2	62	1.10
4605949--4605978	2	15.0	2	92	0	51	46	0	0	53	1.00
4610625--4610871	121	2.0	121	96	0	449	34	15	13	37	1.86
4614058--4614087	12	2.5	12	88	0	51	33	0	10	56	1.32
4619168--4619201	15	2.3	15	95	5	61	82	0	2	14	0.79
4622760--4622805	24	1.9	24	95	0	83	21	30	13	34	1.91
4623747--4623801	28	1.9	28	81	3	65	40	21	3	34	1.71
4626854--4626911	30	1.9	30	89	6	91	17	25	12	44	1.83
4628801--4628825	12	2.1	12	100	0	50	8	24	0	68	1.16
4645654--4645685	2	16.0	2	100	0	64	50	0	0	50	1.00
4646658--4646716	9	6.6	9	92	0	100	10	33	0	55	1.33
4646658--4646732	18	4.3	18	81	10	93	10	33	1	54	1.43
4646670--4646731	15	4.3	15	76	15	69	11	32	1	54	1.45
4646660--4646732	27	2.9	24	86	13	94	10	32	1	54	1.44
4646661--4646729	9	8.1	8	77	19	61	11	33	1	53	1.46
4646661--4646755	24	3.8	25	77	17	81	12	34	1	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4647333--4647367	4	8.8	4	100	0	70	48	25	0	25	1.51
4649038--4649066	10	3.0	10	95	5	51	41	0	6	51	1.28
4649083--4649124	20	2.3	19	88	12	61	66	0	0	33	0.92
4649198--4649251	24	2.2	24	74	6	56	57	3	0	38	1.17
4652203--4652227	2	12.5	2	100	0	50	48	0	0	52	1.00
4654282--4654307	12	2.2	12	100	0	52	34	0	15	50	1.45
4655317--4655346	14	2.1	14	93	0	51	90	0	10	0	0.47
4658017--4658046	3	10.0	3	100	0	60	33	0	0	66	0.92
4662407--4662432	2	13.0	2	100	0	52	50	0	0	50	1.00
4676189--4676222	15	2.3	15	90	5	52	44	0	0	55	0.99
4678717--4678755	16	2.4	16	82	0	51	64	0	0	35	0.94
4679671--4679728	27	2.1	29	93	6	102	43	0	0	56	0.99
4687524--4687560	7	5.4	7	96	3	67	56	0	27	16	1.40
4696686--4696764	41	1.9	41	97	0	149	41	7	16	34	1.77
4699000--4699050	27	1.9	26	88	4	75	47	0	1	50	1.12
4701875--4701900	3	8.7	3	100	0	52	69	0	0	30	0.89
4702953--4703004	19	2.5	22	75	21	65	55	1	1	40	1.22
4706115--4706149	18	2.0	18	94	5	63	28	0	0	71	0.86
4706117--4706149	12	2.8	12	86	4	50	30	0	0	69	0.88
4706281--4706343	28	2.3	28	88	2	92	47	0	1	50	1.10
4706301--4706344	14	3.1	14	73	0	52	54	0	0	45	0.99
4706729--4706772	23	1.9	24	90	9	74	52	0	6	40	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4707272--4707314	22	2.0	22	86	9	61	34	0	0	65	0.93
4713213--4713238	13	2.0	13	100	0	52	76	0	7	15	0.99
4713323--4713367	23	2.0	23	86	0	63	42	0	2	55	1.12
4714225--4714266	2	20.5	2	85	4	57	0	50	4	45	1.23
4721440--4721535	33	2.7	36	73	12	92	50	1	0	48	1.07
4721550--4721610	30	2.1	30	87	6	90	40	1	0	57	1.08
4721457--4721681	110	2.1	108	92	5	373	43	1	0	54	1.14
4721903--4721938	10	3.5	10	88	3	54	27	0	0	72	0.85
4731992--4732048	27	2.1	27	83	6	71	66	1	5	26	1.22
4732676--4732999	105	3.1	104	80	7	363	37	5	19	36	1.76
4733717--4733758	19	2.3	18	84	12	50	47	11	2	38	1.53
4734835--4734886	17	3.0	17	83	8	52	71	0	11	17	1.15
4734873--4734914	22	2.0	22	90	4	68	71	0	14	14	1.15
4734853--4734921	24	3.0	21	76	15	66	73	0	11	14	1.09
4740073--4740119	25	1.9	23	83	12	58	61	0	2	36	1.08
4743202--4743230	3	10.0	3	92	7	51	34	0	0	65	0.93
4751546--4751576	6	5.2	6	96	0	53	19	3	0	77	0.90
4752591--4752615	12	2.1	12	100	0	50	0	8	0	92	0.40
4752911--4752957	19	2.6	18	78	21	53	65	2	2	29	1.15
4755756--4755799	23	1.9	23	85	0	61	45	9	9	36	1.68
4756046--4756389	73	4.8	72	73	11	255	37	8	7	45	1.64
4756078--4756349	138	1.9	143	82	7	342	38	9	7	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4756332--4756439	54	2.1	53	89	5	166	40	6	5	47	1.53
4756396--4756526	66	2.0	66	83	2	167	40	10	3	45	1.57
4780582--4780619	19	2.0	19	94	0	67	60	5	7	26	1.46
4786234--4786280	20	2.3	20	89	7	69	25	29	21	23	1.99
4786519--4786544	8	3.2	8	100	0	52	23	50	26	0	1.50
4786618--4786666	20	2.5	19	84	12	64	12	2	4	81	0.91
4786610--4786666	7	8.4	7	81	12	50	10	1	3	84	0.82
4786618--4786682	32	2.0	32	82	5	78	16	1	7	73	1.13
4786755--4787263	59	8.6	57	86	9	686	44	7	12	34	1.72
4786755--4787263	117	4.3	116	88	8	712	44	7	12	34	1.72
4791084--4791120	8	4.9	8	90	3	51	78	0	10	10	0.97
4791813--4791846	12	2.8	12	90	0	59	32	0	17	50	1.47
4792373--4792912	42	13.1	41	91	6	809	23	18	21	37	1.94
4792373--4792912	82	6.6	82	89	7	800	23	18	21	37	1.94
4792373--4792912	206	2.6	204	95	2	942	23	18	21	37	1.94
4792919--4793033	9	12.7	9	84	15	141	89	10	0	0	0.48
4792919--4793033	10	11.4	10	86	11	155	89	10	0	0	0.48
4792919--4793025	1	107.0	1	81	0	124	90	9	0	0	0.45
4793749--4793787	20	2.0	20	95	5	71	28	25	20	25	1.99
4794116--4794181	16	4.7	15	79	17	63	10	1	4	83	0.86
4794128--4794184	4	14.5	4	76	10	55	14	1	5	78	0.99
4794262--4794718	59	7.7	58	88	8	656	45	8	12	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4794261--4794718	116	3.9	116	91	4	704	45	8	12	34	1.72
4801288--4801338	24	2.0	25	85	7	68	35	9	9	45	1.71
4801194--4801544	178	2.0	177	81	10	416	37	9	7	44	1.67
4801453--4801506	26	2.1	26	89	0	81	44	7	3	44	1.49
4801469--4801516	25	1.9	25	83	8	62	41	8	2	47	1.45
4801850--4801966	6	18.7	6	74	13	76	75	3	2	18	1.06
4801862--4801945	37	2.2	37	84	12	109	76	3	2	17	1.04
4801885--4801966	26	3.0	27	75	24	84	75	2	0	21	0.92
4801850--4801966	56	2.1	56	81	13	134	75	3	2	18	1.06
4802210--4802480	41	6.6	40	82	7	260	45	14	15	24	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138