genome.fa.s124.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  79  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14044224--14044726	159	3.2	158	76	4	440	22	31	27	19	1.98
14044700--14044752	26	2.0	26	92	0	88	26	18	28	26	1.98
14045434--14045930	158	3.2	154	73	4	415	22	28	27	20	1.99
14046297--14046711	158	2.6	158	77	8	430	23	28	28	20	1.99
14046772--14046823	26	2.0	25	85	10	70	28	17	26	26	1.97
14050378--14050402	11	2.3	11	100	0	50	16	32	24	28	1.96
14050481--14050527	24	2.0	24	91	8	78	31	14	23	29	1.95
14051030--14051082	26	2.0	26	92	7	90	28	20	24	26	1.99
14051532--14051584	26	2.0	26	88	0	79	24	18	26	30	1.98
14051623--14051647	13	1.9	13	100	0	50	16	16	56	12	1.68
14051913--14051965	26	2.0	26	89	7	81	32	20	18	28	1.97
14053324--14053371	25	1.9	25	95	0	87	31	20	20	27	1.98
14053907--14053932	13	2.0	13	100	0	52	23	30	46	0	1.53
14053134--14054598	712	2.1	707	83	3	1818	23	28	27	20	1.99
14055594--14055646	26	2.0	26	88	0	79	26	18	26	28	1.98
14056306--14056356	26	2.0	26	92	7	86	29	15	25	29	1.96
14056806--14056859	26	2.0	27	85	3	74	25	20	27	25	1.99
14057529--14057581	26	2.0	26	85	7	72	28	18	24	28	1.98
14057554--14058060	158	3.2	156	76	7	434	23	30	27	18	1.98
14058059--14058423	170	2.1	171	79	3	394	23	30	26	20	1.98
14058422--14058839	159	2.6	158	82	1	516	22	25	30	21	1.99
14058423--14058925	159	3.2	156	78	3	504	22	27	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14058899--14058951	26	2.0	26	92	0	88	24	18	26	30	1.98
14059635--14060003	156	2.3	155	77	5	373	23	28	27	19	1.98
14059635--14060028	159	2.5	153	76	7	369	23	28	28	19	1.98
14060110--14060161	26	2.0	26	88	0	77	26	15	28	28	1.96
14060330--14060759	159	2.7	156	73	8	380	23	29	27	19	1.98
14060807--14060859	26	2.0	26	86	13	74	26	20	26	26	1.99
14061545--14061597	26	2.0	26	89	7	81	28	18	24	28	1.98
14061885--14062426	159	3.4	157	75	6	438	23	28	28	19	1.98
14062983--14063035	26	2.0	26	96	0	97	24	20	28	26	1.99
14063364--14063416	26	2.0	26	85	7	72	28	18	22	30	1.98
14063548--14064178	159	3.9	158	70	10	438	22	29	26	20	1.99
14063539--14064170	328	1.9	328	85	3	860	22	29	26	21	1.99
14064192--14064247	26	2.2	26	90	0	85	26	14	28	30	1.95
14064001--14064702	356	2.0	353	80	3	784	23	29	27	19	1.98
14064576--14064990	159	2.6	156	75	9	365	25	26	28	20	1.99
14064349--14065457	530	2.2	512	80	7	1192	23	28	26	20	1.99
14065709--14065761	26	2.0	26	85	7	72	28	16	24	30	1.97
14066921--14066973	26	2.0	26	88	0	79	26	16	28	28	1.97
14067301--14067353	26	2.0	26	92	0	88	28	18	28	24	1.98
14067790--14067867	26	3.0	26	94	1	131	26	20	25	26	1.99
14068524--14068574	26	2.0	26	88	0	75	31	9	27	31	1.89
14069257--14069309	26	2.0	26	89	7	81	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14069835--14070409	158	3.6	157	77	6	511	24	28	28	19	1.98
14070151--14070496	158	2.2	156	81	4	374	22	28	28	20	1.99
14070467--14070519	26	2.0	26	89	7	81	24	16	28	30	1.97
14070677--14070729	26	2.0	26	89	7	81	26	16	24	32	1.97
14070702--14071364	159	4.2	159	79	3	611	23	30	26	20	1.98
14070702--14071333	318	2.0	317	81	2	732	22	30	27	19	1.98
14071338--14071390	26	2.0	26	92	0	88	26	20	26	26	1.99
14071720--14071769	26	2.0	25	92	4	82	26	14	32	28	1.94
14072145--14072194	26	1.9	26	92	8	84	36	20	20	24	1.95
14072170--14072616	158	2.8	155	77	6	441	23	29	27	19	1.98
14073369--14073421	26	2.0	26	85	7	72	28	18	22	30	1.98
14073394--14074336	159	6.0	158	75	5	719	22	29	27	20	1.99
14073395--14074248	317	2.7	313	78	5	831	22	28	27	21	1.99
14075487--14075918	159	2.7	159	83	0	560	22	31	29	17	1.96
14076684--14076736	26	2.0	26	85	7	72	26	20	22	30	1.98
14077184--14077239	26	2.2	26	93	0	94	28	17	25	28	1.98
14077393--14077446	26	2.1	26	89	6	83	27	18	25	27	1.98
14077896--14077948	26	2.0	26	85	0	70	28	18	24	28	1.98
14078792--14078844	26	2.0	26	88	0	79	26	18	28	26	1.98
14079002--14079501	158	3.2	157	73	6	420	25	29	26	19	1.98
14080148--14080200	26	2.0	26	92	7	90	24	20	30	24	1.99
14078763--14080393	671	2.4	667	83	3	1997	23	29	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14086387--14086419	10	3.3	10	87	12	50	3	0	6	90	0.52
14086410--14086444	11	3.3	11	88	8	54	22	0	2	74	0.95
14086474--14086556	5	15.6	5	72	20	53	14	4	2	78	1.02
14086485--14086561	9	8.4	9	73	21	54	14	6	2	76	1.09
14086479--14086561	26	3.2	25	79	17	80	14	6	2	77	1.07
14086493--14086527	16	2.1	17	89	5	54	11	5	0	82	0.82
14086478--14086555	32	2.4	33	81	14	92	14	5	2	78	1.03
14086573--14086975	61	6.7	57	79	13	429	42	8	13	34	1.75
14086570--14086972	57	6.7	59	80	10	428	43	7	13	34	1.74
14086574--14086975	118	3.4	116	86	9	533	42	8	13	35	1.75
14096025--14096135	16	6.9	16	78	15	95	80	0	9	9	0.92
14096025--14096127	34	3.2	33	80	4	111	81	0	8	9	0.87
14096026--14096135	8	13.6	8	78	17	86	80	0	10	10	0.92
14097139--14097481	42	8.1	41	91	6	508	23	16	23	36	1.94
14097139--14097481	83	4.1	83	90	5	528	23	16	23	36	1.94
14097492--14097550	19	3.2	18	77	15	57	81	10	1	6	0.94
14097490--14097553	32	2.0	32	82	8	78	81	10	1	6	0.94
14097703--14097735	9	3.8	9	88	8	50	15	0	3	81	0.80
14097701--14097747	23	2.0	23	84	8	60	17	2	2	78	0.94
14097719--14097760	11	3.5	12	83	6	50	23	2	2	71	1.10
14097776--14097850	4	18.8	4	71	28	54	25	1	1	72	1.01
14097779--14097890	14	7.8	14	72	16	70	25	3	1	68	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14097783--14097833	27	1.9	26	88	4	75	27	1	0	70	0.98
14097776--14097841	17	3.9	16	75	21	55	25	1	1	71	1.04
14098261--14098298	19	2.0	19	89	0	58	31	10	21	36	1.87
14098788--14098844	30	1.9	30	88	0	87	15	5	3	75	1.12
14098944--14099118	58	2.9	58	91	4	269	43	8	13	35	1.73
14099016--14099175	74	2.2	73	85	3	212	46	7	11	33	1.69
14099104--14099132	14	2.1	14	100	0	58	48	0	37	13	1.43
14099044--14099192	74	2.0	74	98	0	289	46	6	16	30	1.72
14099117--14099261	60	2.4	59	88	7	222	45	7	13	33	1.71
14100054--14100106	26	2.0	26	92	7	90	28	20	24	26	1.99
14100079--14100525	159	2.8	158	78	5	425	22	28	28	20	1.98
14100080--14100581	158	3.2	159	78	4	548	22	28	27	20	1.99
14100555--14100607	26	2.0	26	96	0	97	24	20	28	26	1.99
14101805--14101857	26	2.0	26	88	0	79	26	18	26	28	1.98
14102502--14102580	26	3.0	26	88	0	122	30	17	24	27	1.97
14103249--14103301	26	2.0	26	89	7	81	30	18	24	26	1.98
14103592--14103644	26	2.0	26	96	0	97	22	15	30	32	1.94
14103737--14104311	159	3.6	158	76	4	532	23	30	25	20	1.98
14104784--14104836	26	2.0	26	96	0	97	26	20	24	28	1.99
14105160--14105214	26	2.1	27	90	10	87	29	16	29	25	1.97
14105313--14105343	12	2.6	12	89	0	53	16	38	16	29	1.90
14105720--14105772	26	2.0	26	82	13	65	30	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14105768--14106247	159	3.0	157	75	6	385	22	28	27	21	1.99
14106221--14106273	26	2.0	26	88	0	79	26	18	26	28	1.98
14106956--14107394	158	2.8	157	76	4	422	24	31	26	17	1.97
14108137--14108189	26	2.0	26	89	7	81	28	18	24	28	1.98
14108480--14108532	26	2.0	26	92	0	88	24	16	26	32	1.97
14108689--14108741	26	2.0	26	89	7	81	30	20	22	26	1.98
14109524--14109576	26	2.0	26	85	7	72	32	22	18	26	1.97
14110182--14110233	26	2.0	26	88	3	79	26	21	25	26	1.99
14110023--14110430	183	2.2	184	85	3	518	23	28	27	20	1.99
14110365--14110417	26	2.0	26	92	0	88	26	20	26	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138