genome.fa.s124.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  114  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16788214--16788266	26	2.0	26	88	0	79	24	13	28	33	1.93
16788595--16788647	26	2.0	26	92	7	90	30	20	22	26	1.98
16795013--16795064	26	2.0	26	84	0	68	25	15	30	28	1.96
16795038--16795329	159	1.8	159	84	1	397	22	29	29	18	1.97
16795553--16796126	158	3.6	158	77	5	552	23	29	28	18	1.98
16795533--16796117	317	1.8	316	86	1	839	23	29	27	19	1.98
16796587--16797554	315	3.1	313	78	7	848	23	29	26	20	1.99
16796583--16797488	159	5.7	157	75	7	516	23	29	26	20	1.99
16797527--16797577	26	2.0	26	96	0	93	27	19	29	23	1.98
16798086--16798138	26	2.0	26	85	7	72	24	15	28	32	1.95
16798810--16799245	159	2.7	156	77	6	423	24	31	24	19	1.98
16799227--16799279	26	2.0	26	85	0	70	24	16	26	32	1.97
16799622--16800196	159	3.6	159	73	9	447	24	30	27	18	1.98
16800779--16800831	26	2.0	26	89	7	81	28	18	24	28	1.98
16801269--16801321	26	2.0	26	85	0	70	22	16	30	30	1.96
16801455--16802298	158	5.3	157	71	10	570	23	29	26	20	1.99
16803004--16803056	26	2.0	26	89	7	81	28	18	24	28	1.98
16803545--16803849	164	1.9	164	85	2	425	20	33	27	18	1.96
16803342--16804006	361	1.9	348	83	4	873	22	30	27	19	1.98
16803895--16805192	159	8.1	159	71	10	440	24	30	25	19	1.98
16804374--16805192	317	2.6	317	81	1	928	24	29	25	20	1.99
16804372--16805192	158	5.2	156	75	6	569	24	29	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16805166--16805218	26	2.0	26	88	0	79	30	22	22	24	1.99
16805776--16805826	26	2.0	26	84	0	66	31	17	21	29	1.96
16805619--16806425	355	2.3	348	78	8	783	23	28	27	20	1.99
16807392--16807884	158	3.1	158	80	3	571	22	30	26	20	1.98
16807866--16807918	26	2.0	26	85	0	70	24	15	28	32	1.95
16808874--16808932	26	2.3	25	88	2	82	23	18	28	28	1.98
16808879--16808932	25	2.1	26	89	3	83	25	18	27	27	1.98
16809546--16809626	26	3.1	26	94	1	144	28	23	22	25	1.99
16810072--16810124	26	2.0	26	92	0	88	24	18	28	28	1.98
16810098--16810473	159	2.4	159	78	1	351	23	28	26	21	1.99
16810561--16810613	26	2.0	26	88	0	79	28	20	24	26	1.99
16811272--16811324	26	2.0	26	86	13	74	30	16	22	30	1.96
16811615--16811667	26	2.0	26	88	0	79	24	16	28	30	1.97
16811270--16811912	343	1.9	342	84	2	880	23	28	28	20	1.99
16811640--16812079	159	2.8	159	83	2	539	22	30	28	17	1.97
16812117--16812167	26	2.0	26	88	0	75	25	11	31	31	1.92
16812852--16813300	158	2.8	158	76	8	414	24	30	25	19	1.98
16813330--16813382	26	2.0	26	85	0	70	28	22	22	26	1.99
16813550--16813933	158	2.4	158	78	1	349	25	28	26	20	1.99
16814895--16814948	26	2.1	26	93	6	92	27	20	24	27	1.99
16815225--16815277	26	2.0	26	88	0	79	24	20	26	28	1.99
16815196--16815579	195	2.0	196	82	3	470	23	29	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16815445--16815852	159	2.6	158	75	4	390	25	29	26	18	1.98
16815921--16815973	26	2.0	26	88	0	79	28	18	26	26	1.98
16815445--16816680	685	1.8	685	84	0	1729	23	28	27	20	1.99
16816101--16816552	159	2.9	157	73	5	408	23	27	28	20	1.99
16816606--16816658	26	2.0	26	92	0	88	24	22	28	24	2.00
16818112--16818164	26	2.0	26	89	7	81	26	18	26	28	1.98
16817914--16818865	367	2.6	366	83	3	1191	22	29	27	19	1.98
16818656--16819156	158	3.2	154	73	11	426	22	29	27	19	1.98
16820892--16820944	26	2.0	26	92	0	88	26	16	28	28	1.97
16821770--16822226	159	2.9	157	68	7	357	25	29	26	19	1.99
16822273--16822325	26	2.0	26	96	0	97	24	20	28	26	1.99
16826284--16826317	17	2.0	17	88	0	50	14	35	5	44	1.70
16828924--16828976	26	2.0	26	85	7	72	24	16	26	32	1.97
16829657--16829709	26	2.0	26	88	0	79	30	18	24	26	1.98
16830158--16830209	25	2.0	26	92	3	88	25	15	28	30	1.96
16830525--16830580	26	2.2	26	90	6	87	28	21	23	26	1.99
16831606--16832424	159	5.2	159	75	5	625	22	29	27	20	1.98
16831605--16832354	318	2.4	317	83	1	901	22	30	28	19	1.98
16833213--16834766	159	9.7	159	75	6	1079	22	30	27	19	1.98
16833303--16834766	316	4.6	314	76	8	1030	23	30	27	19	1.98
16833620--16834519	487	1.8	486	79	5	1046	23	29	27	19	1.98
16833457--16834706	646	1.9	644	82	4	1554	23	30	27	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16834898--16835188	159	1.8	159	85	2	406	23	31	28	17	1.97
16834898--16835269	159	2.3	158	76	8	367	22	30	26	20	1.98
16834394--16835331	502	1.9	502	82	2	1193	24	28	27	20	1.99
16835955--16836007	26	2.0	26	92	7	90	30	20	22	26	1.98
16837009--16837061	26	2.0	26	92	7	90	28	20	24	26	1.99
16837034--16837377	159	2.2	159	83	2	415	22	29	27	20	1.98
16837351--16837403	26	2.0	26	85	0	70	30	18	24	26	1.98
16837532--16838062	158	3.4	155	78	6	546	22	30	27	19	1.98
16838036--16838088	26	2.0	26	92	0	88	26	20	26	26	1.99
16839480--16839532	26	2.0	26	89	7	81	28	18	24	28	1.98
16839505--16839938	159	2.7	159	76	3	426	24	31	26	17	1.97
16839981--16840033	26	2.0	26	85	7	72	26	16	26	30	1.97
16840510--16840926	159	2.6	158	75	8	407	24	28	28	18	1.98
16840980--16841029	26	2.0	26	85	14	70	30	12	28	30	1.92
16840966--16841319	196	1.8	196	84	0	492	25	25	25	23	2.00
16841684--16841736	26	2.0	26	96	0	97	24	20	28	26	1.99
16842676--16842728	26	2.0	26	96	0	97	24	20	28	26	1.99
16844861--16844913	26	2.0	26	85	7	72	30	18	22	28	1.98
16845366--16845418	26	2.0	26	92	7	90	28	20	24	26	1.99
16846296--16846775	158	3.0	158	70	7	400	22	28	27	21	1.99
16846749--16846801	26	2.0	26	82	7	63	28	18	22	30	1.98
16847799--16847851	27	2.0	27	85	7	72	32	16	20	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16847984--16848435	159	2.8	160	78	8	445	23	29	28	18	1.98
16848652--16849172	157	3.3	154	76	9	471	23	29	26	20	1.99
16851083--16851135	26	2.0	26	92	0	88	24	15	28	32	1.95
16850924--16851479	185	3.0	184	76	8	545	22	27	26	22	1.99
16851770--16851822	26	2.0	26	88	0	79	30	18	22	28	1.98
16852701--16852753	26	2.0	26	85	7	72	28	18	26	26	1.98
16852851--16853229	159	2.4	158	75	7	379	21	31	27	20	1.98
16853834--16853884	26	2.0	26	92	7	86	29	19	23	27	1.98
16854487--16854536	25	2.0	26	92	4	84	26	14	26	34	1.94
16855706--16855758	26	2.0	26	85	0	70	24	20	26	28	1.99
16856428--16856478	26	2.0	26	92	7	86	29	19	23	27	1.98
16857101--16857153	26	2.0	26	82	13	65	28	18	24	28	1.98
16858060--16858527	159	2.9	158	77	4	485	23	31	27	17	1.97
16858373--16859047	355	1.9	355	84	2	917	23	31	26	18	1.98
16860306--16860713	171	2.4	171	75	5	376	21	30	25	22	1.98
16860679--16860739	26	2.4	26	75	20	67	27	14	26	31	1.95
16861188--16861240	26	2.0	26	88	0	79	28	20	24	26	1.99
16862201--16862253	26	2.0	26	89	7	81	28	18	24	28	1.98
16863225--16863277	26	2.0	26	92	0	88	24	18	28	28	1.98
16865638--16865690	26	2.0	26	85	7	72	30	18	22	28	1.98
16865479--16865848	184	2.0	184	80	3	413	23	27	27	21	1.99
16866139--16866191	26	2.0	26	88	0	79	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16871555--16871610	26	2.1	27	86	3	78	23	16	28	32	1.96
16871923--16871975	26	2.0	26	92	0	88	28	18	22	30	1.98
16871948--16872368	159	2.7	158	80	3	461	23	30	28	17	1.97
16879072--16879124	26	2.0	26	92	7	90	28	20	24	26	1.99
16879098--16879598	159	3.2	156	76	8	471	23	28	27	19	1.99
16879571--16879623	26	2.0	26	92	0	88	26	20	26	26	1.99
16879951--16880002	26	2.0	26	85	7	70	26	17	26	28	1.97
16881182--16881684	159	3.2	157	77	5	503	21	29	28	19	1.98
16881341--16882027	343	2.0	343	83	3	855	21	29	29	19	1.98
16881735--16882250	159	3.3	157	74	5	464	22	29	29	18	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138