genome.fa.s124.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  92  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15062371--15062422	26	2.0	25	88	3	77	25	17	30	26	1.97
15062534--15062852	155	2.1	154	89	5	491	22	31	26	18	1.97
15062885--15062937	26	2.0	26	85	7	72	26	20	24	28	1.99
15064074--15064126	26	2.0	26	92	7	90	28	20	24	26	1.99
15064100--15064575	147	3.2	150	77	10	478	22	31	28	17	1.97
15064550--15064601	25	2.0	26	92	3	88	25	21	26	26	1.99
15064398--15064947	176	3.0	177	79	13	562	23	30	26	19	1.98
15064398--15064947	184	3.0	178	76	14	548	23	30	26	19	1.98
15070914--15070964	26	2.0	26	88	7	77	27	17	25	29	1.98
15072137--15072189	26	2.0	26	92	0	88	26	16	26	30	1.97
15072331--15072383	26	2.0	26	92	7	90	28	20	24	26	1.99
15073555--15073607	26	2.0	26	85	7	72	26	18	26	28	1.98
15073890--15073942	26	2.0	26	92	0	88	24	18	28	28	1.98
15074100--15074124	13	1.9	13	100	0	50	24	20	48	8	1.76
15074548--15074917	159	2.3	159	82	5	410	25	28	25	21	1.99
15075907--15075958	25	2.0	26	88	3	79	28	17	23	30	1.97
15076592--15076644	26	2.0	26	82	7	63	26	18	24	30	1.98
15077348--15077400	26	2.0	26	85	7	72	26	22	18	32	1.97
15078779--15079173	159	2.5	159	84	4	485	24	30	27	17	1.97
15080311--15080810	159	3.2	155	77	5	475	24	28	26	20	1.99
15080784--15080836	26	2.0	26	88	0	79	28	18	26	26	1.98
15081544--15082033	158	3.1	158	75	8	384	22	30	26	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15082007--15082058	25	2.0	26	88	3	79	25	21	23	30	1.99
15082321--15082359	12	3.2	12	85	0	51	10	33	23	33	1.88
15082886--15082938	26	2.0	26	89	7	81	30	16	22	30	1.96
15083229--15083280	26	2.0	26	92	0	86	25	17	28	28	1.97
15082864--15083730	343	2.5	342	80	5	909	25	29	25	19	1.99
15084084--15084136	26	2.0	26	92	0	88	26	20	26	26	1.99
15085288--15085949	159	4.2	159	78	4	595	22	30	26	19	1.98
15085923--15085975	26	2.0	26	82	7	63	26	15	26	32	1.95
15086275--15086326	26	2.0	26	84	0	68	28	19	23	28	1.98
15086775--15086827	26	2.0	26	88	0	79	26	15	26	32	1.95
15093393--15093445	26	2.0	26	85	7	72	30	18	22	28	1.98
15094446--15094498	26	2.0	26	85	7	72	28	18	24	28	1.98
15094484--15094799	171	1.8	171	80	2	375	23	31	25	19	1.98
15095316--15095368	26	2.0	26	88	0	79	26	16	28	28	1.97
15096509--15096561	26	2.0	26	96	0	97	24	20	28	26	1.99
15097033--15097085	26	2.0	26	88	0	79	20	20	30	28	1.98
15097328--15097376	25	2.0	25	92	8	82	32	14	20	32	1.92
15097878--15097930	26	2.0	26	89	7	81	28	18	24	28	1.98
15097904--15098407	159	3.2	155	73	9	397	23	28	26	21	1.99
15098381--15098433	27	2.0	26	85	7	70	26	16	28	28	1.97
15098777--15098830	27	2.0	26	86	10	74	29	18	22	29	1.97
15098803--15099219	159	2.6	158	77	8	348	24	30	26	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15099278--15099330	26	2.0	26	85	0	70	28	16	26	28	1.97
15100682--15100734	26	2.0	26	92	0	88	28	18	24	28	1.98
15100891--15100942	26	2.0	25	88	3	77	32	17	21	28	1.96
15099999--15101487	709	2.1	709	83	3	1872	24	29	26	19	1.99
15101393--15101445	26	2.0	26	88	0	79	26	18	26	28	1.98
15099999--15101496	711	2.1	708	82	4	1856	24	29	26	19	1.99
15102395--15102447	26	2.0	26	96	0	97	24	20	28	26	1.99
15103117--15103167	26	2.0	26	92	7	86	29	15	25	29	1.96
15103617--15103669	26	2.0	26	85	0	70	28	16	26	28	1.97
15104338--15104390	26	2.0	26	85	7	72	28	18	24	28	1.98
15104363--15104830	159	3.0	157	78	5	485	22	30	28	18	1.97
15105207--15105259	26	2.0	26	89	7	81	30	20	22	26	1.98
15104522--15105447	355	2.6	344	76	11	933	24	29	26	19	1.98
15105232--15105734	158	3.2	159	79	5	554	22	27	28	21	1.99
15105708--15105760	26	2.0	26	92	0	88	24	18	26	30	1.98
15106443--15106800	158	2.3	158	77	4	362	25	29	25	19	1.99
15106443--15106842	159	2.5	158	76	5	403	25	28	27	19	1.98
15106919--15106971	26	2.0	26	85	0	70	28	16	26	28	1.97
15107118--15107167	25	2.0	25	88	7	75	34	20	22	24	1.97
15107143--15107599	158	2.9	158	72	7	424	22	29	26	20	1.98
15107615--15107667	26	2.0	26	89	7	81	26	22	26	24	2.00
15108294--15108346	26	2.0	26	85	7	72	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15109541--15109592	25	2.0	26	92	3	88	25	21	28	25	1.99
15109566--15109852	158	1.8	157	84	1	396	22	31	28	17	1.96
15109197--15110197	341	2.9	342	86	1	1337	22	29	28	19	1.98
15109566--15109908	158	2.2	157	81	4	386	23	31	27	18	1.97
15109882--15109934	26	2.0	26	88	0	79	28	20	24	26	1.99
15110546--15110598	26	2.0	26	92	0	88	26	20	26	26	1.99
15111759--15111809	26	2.0	26	88	7	77	29	17	25	27	1.98
15111601--15111963	184	2.0	184	82	2	451	22	28	27	21	1.99
15111076--15112350	501	2.5	498	81	3	1425	23	29	26	20	1.99
15112259--15112309	26	2.0	26	92	7	86	27	19	25	27	1.99
15112893--15112947	11	5.0	11	86	0	74	14	32	32	20	1.92
15112900--15112947	22	2.2	22	96	0	87	14	31	35	18	1.91
15113042--15113473	159	2.7	158	75	5	408	25	30	26	17	1.97
15113895--15113950	26	2.2	26	90	6	87	28	17	23	30	1.97
15113920--15114461	159	3.4	159	79	4	468	21	29	28	19	1.98
15114173--15114501	159	2.1	159	84	2	419	20	31	29	18	1.96
15114556--15114608	26	2.0	26	92	0	88	24	20	26	28	1.99
15114765--15114842	26	3.0	26	94	3	131	30	17	23	28	1.97
15115293--15115343	26	2.0	26	88	0	75	27	11	29	31	1.92
15116048--15116541	159	3.1	159	79	4	516	22	29	28	19	1.98
15116515--15116567	26	2.0	26	88	0	79	24	20	28	26	1.99
15117239--15117291	26	2.0	26	85	7	72	30	18	20	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15117423--15117475	26	2.0	26	88	0	79	24	22	24	28	2.00
15118052--15118104	26	2.0	26	85	7	72	30	18	22	28	1.98
15118077--15118514	159	2.8	157	79	6	465	23	29	28	18	1.98
15118552--15118604	26	2.0	26	92	0	88	24	20	26	28	1.99
15118918--15118970	26	2.0	26	92	7	90	28	20	24	26	1.99
15119417--15119467	26	2.0	26	92	7	86	27	19	29	23	1.98
15119796--15119847	26	2.0	26	88	7	79	26	19	25	28	1.98
15120446--15120498	26	2.0	26	89	7	81	28	18	24	28	1.98
15120788--15120837	26	1.9	26	87	0	73	24	20	28	28	1.99
15120952--15121253	157	1.9	157	82	1	381	23	30	26	18	1.98
15121797--15122140	157	2.2	158	81	5	383	21	30	28	18	1.97
15122114--15122165	25	2.0	26	92	3	88	26	21	25	26	1.99
15122627--15122679	26	2.0	26	82	13	65	26	15	28	30	1.96
15121867--15122798	513	1.8	511	82	3	1178	23	29	27	19	1.98
15124018--15124070	26	2.0	26	89	7	81	28	18	24	28	1.98
15125419--15125469	26	2.0	26	88	7	77	29	13	25	31	1.94
15126790--15126842	26	2.0	26	85	7	72	26	18	24	30	1.98
15127512--15127564	26	2.0	26	89	7	81	28	18	24	28	1.98
15127538--15128510	158	6.2	158	78	5	881	22	29	27	20	1.98
15127538--15128510	472	2.1	474	83	3	1217	22	29	27	20	1.98
15128484--15128536	26	2.0	26	92	0	88	24	20	26	28	1.99
15129235--15129736	159	3.2	159	78	3	537	22	30	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15129711--15129762	26	2.0	26	84	0	68	26	19	25	28	1.98
15130065--15130117	26	2.0	26	89	7	81	30	20	24	24	1.99
15129525--15130189	355	1.9	354	85	1	920	23	29	27	19	1.98
15129905--15130276	185	2.0	185	84	2	487	24	29	26	19	1.99
15130100--15130584	159	3.1	157	74	7	390	22	29	28	18	1.98
15130566--15130618	26	2.0	26	85	0	70	26	15	28	30	1.96
15131288--15131340	26	2.0	26	89	7	81	28	20	24	26	1.99
15131623--15131675	26	2.0	26	92	7	90	28	20	24	26	1.99
15132441--15132493	26	2.0	26	92	7	90	28	20	24	26	1.99
15132784--15132836	26	2.0	26	89	7	81	26	15	28	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138