genome.fa.s124.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  110  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16468042--16468861	316	2.6	315	82	4	934	20	27	29	23	1.99
16468834--16468886	26	2.0	26	92	7	90	30	24	16	28	1.97
16471071--16471123	26	2.0	26	92	0	88	26	26	20	26	1.99
16471440--16471492	26	2.0	26	89	7	81	24	26	22	26	2.00
16471031--16471737	357	2.0	362	81	4	836	20	26	29	24	1.99
16471474--16471906	157	2.8	158	76	4	462	20	27	29	21	1.98
16472818--16472870	26	2.0	26	92	0	88	28	22	16	32	1.96
16471057--16473027	879	2.3	863	80	4	2139	21	25	28	24	1.99
16473013--16473065	26	2.0	26	96	0	97	26	28	20	24	1.99
16473126--16473360	118	2.0	119	94	0	409	19	28	24	27	1.99
16473486--16474010	159	3.3	158	77	5	515	20	25	29	24	1.99
16474240--16474292	26	2.0	26	85	0	70	30	26	16	26	1.97
16474582--16474634	26	2.0	26	85	7	72	26	22	20	30	1.98
16474792--16474841	26	1.9	26	88	8	75	20	28	26	26	1.99
16474977--16475029	26	2.0	26	92	7	90	26	22	20	30	1.98
16475294--16475320	13	2.1	13	100	0	54	7	37	25	29	1.83
16475360--16475410	26	2.0	26	96	0	93	27	27	19	25	1.99
16475856--16475908	26	2.0	26	85	7	72	26	22	20	30	1.98
16478560--16478612	26	2.0	26	89	7	81	30	28	16	24	1.97
16480122--16480174	26	2.0	26	92	7	90	26	22	20	30	1.98
16480845--16480897	26	2.0	26	89	7	81	30	28	16	24	1.97
16481347--16481398	26	2.0	26	88	7	79	25	25	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16482220--16482270	26	2.0	26	92	7	86	31	25	15	27	1.96
16482402--16482454	26	2.0	26	89	7	81	28	22	18	30	1.98
16483622--16483677	26	2.2	26	93	6	96	28	23	19	28	1.98
16483995--16484047	26	2.0	26	86	13	74	30	22	16	30	1.96
16484716--16484768	26	2.0	26	89	7	81	28	24	18	28	1.98
16484742--16485893	158	7.2	158	75	8	819	19	27	30	23	1.98
16484742--16485893	317	3.6	317	76	8	1106	19	27	30	23	1.98
16486616--16487117	158	3.2	158	77	4	451	19	26	29	24	1.98
16487090--16487142	26	2.0	26	89	7	81	32	24	15	28	1.95
16488376--16488869	159	3.1	158	78	2	506	18	27	30	23	1.98
16488852--16488903	26	2.0	26	85	7	70	25	25	19	30	1.98
16489219--16489271	26	2.0	26	92	0	88	28	28	18	24	1.98
16489245--16489744	157	3.2	156	75	7	463	19	27	30	23	1.98
16490222--16490620	159	2.5	160	77	6	396	19	29	28	23	1.98
16490592--16490643	26	2.0	25	92	3	86	26	21	21	30	1.98
16497182--16497234	26	2.0	26	92	0	88	28	28	18	24	1.98
16497295--16497710	159	2.6	160	81	3	466	18	26	28	25	1.98
16497684--16497736	26	2.0	26	85	7	72	28	24	18	28	1.98
16498063--16498115	26	2.0	26	88	0	79	30	28	16	24	1.97
16498765--16498836	26	2.8	26	93	0	126	26	27	19	26	1.99
16499619--16499671	26	2.0	26	85	7	72	26	20	20	32	1.98
16499235--16500065	365	2.3	354	81	5	895	21	26	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16502075--16502127	26	2.0	26	92	0	88	26	26	20	26	1.99
16501880--16502691	366	2.2	367	83	2	1022	20	26	29	23	1.99
16502474--16502856	159	2.4	157	73	7	371	21	26	29	22	1.99
16503443--16503493	26	2.0	26	92	0	84	31	21	17	29	1.96
16503564--16503596	11	3.0	11	95	0	57	18	30	36	15	1.91
16504174--16504226	26	2.0	26	92	0	88	28	28	18	24	1.98
16506107--16506158	26	2.0	26	88	0	77	32	26	13	26	1.94
16505561--16506645	513	2.1	510	80	5	1217	20	27	29	22	1.98
16507655--16507708	26	2.0	27	92	3	92	25	27	20	25	1.99
16507996--16508048	26	2.0	26	92	7	90	22	24	24	28	2.00
16508716--16508765	26	1.9	26	87	0	73	24	34	18	24	1.96
16508742--16509239	156	3.2	155	73	7	443	20	27	28	23	1.99
16509213--16509265	26	2.0	26	89	7	81	28	22	20	28	1.99
16510550--16510601	25	2.0	26	85	10	72	26	26	19	26	1.99
16510575--16511103	159	3.4	157	81	5	597	19	25	31	23	1.98
16511228--16511280	26	2.0	26	89	7	81	30	28	16	24	1.97
16511413--16511464	26	2.0	26	92	7	88	26	25	19	28	1.98
16512454--16512506	26	2.0	26	85	0	70	26	26	16	30	1.97
16513439--16513491	26	2.0	26	89	7	81	28	24	18	28	1.98
16513789--16513841	26	2.0	26	85	0	70	28	28	16	26	1.97
16514146--16514502	184	1.9	185	82	2	441	19	27	29	23	1.98
16515371--16515803	159	2.7	156	76	7	406	21	28	28	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16515842--16515897	26	2.2	26	90	6	87	28	23	17	30	1.97
16516038--16516090	26	2.0	26	88	0	79	24	30	22	22	1.99
16516380--16516432	26	2.0	26	82	7	63	30	22	16	30	1.96
16517089--16517141	26	2.0	26	96	0	97	26	28	20	24	1.99
16517589--16517642	27	2.0	27	89	10	85	31	24	18	25	1.97
16517679--16518169	158	3.1	158	76	6	391	20	27	29	22	1.98
16518277--16518326	26	1.9	26	88	8	75	30	18	20	32	1.96
16518301--16518800	158	3.2	158	76	4	398	19	27	30	22	1.98
16519553--16520018	159	2.9	157	77	5	348	18	26	30	24	1.98
16519994--16520046	26	2.0	26	92	7	90	30	22	16	30	1.96
16527269--16527840	159	3.6	158	75	6	514	19	27	29	23	1.98
16527814--16527866	26	2.0	26	96	0	97	26	20	22	30	1.98
16528276--16528721	157	2.8	159	79	6	438	18	27	30	23	1.97
16529577--16529627	26	2.0	26	88	0	75	31	23	17	27	1.97
16530081--16530133	26	2.0	26	85	7	72	30	24	18	26	1.98
16530612--16531001	157	2.5	159	75	6	380	17	24	32	25	1.97
16531239--16531291	26	2.0	26	89	7	81	30	22	18	28	1.98
16532303--16532691	159	2.4	159	80	5	435	17	24	31	25	1.97
16532663--16532715	26	2.0	26	85	7	72	26	26	18	28	1.98
16532744--16533057	171	1.8	170	81	6	393	19	28	30	21	1.98
16533030--16533082	26	2.0	26	92	7	90	26	26	20	26	1.99
16533957--16534007	26	2.0	26	96	0	93	27	31	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16534758--16534810	26	2.0	26	85	7	72	28	26	15	30	1.96
16535131--16535181	26	2.0	26	92	0	84	29	29	17	23	1.97
16535193--16535682	158	3.1	159	76	3	524	19	29	30	21	1.97
16536325--16536376	26	2.0	26	88	7	79	26	23	19	30	1.98
16537027--16537079	26	2.0	26	92	7	90	28	22	20	28	1.99
16537946--16537996	26	2.0	26	96	0	93	25	29	19	25	1.99
16537874--16538341	184	2.5	184	82	3	557	19	27	28	24	1.99
16538196--16538499	159	1.9	158	83	2	394	19	27	30	23	1.98
16538158--16538540	159	2.4	156	76	4	372	22	26	28	22	1.99
16539433--16539485	26	2.0	26	82	13	65	30	24	16	28	1.97
16541110--16541538	158	2.7	157	79	6	463	19	28	30	22	1.98
16541721--16541774	26	2.1	26	92	0	90	29	27	18	24	1.98
16542062--16542114	26	2.0	26	89	7	81	26	22	20	30	1.98
16542272--16542324	26	2.0	26	89	7	81	32	26	15	26	1.95
16541428--16542661	549	2.2	548	81	4	1396	21	26	27	23	1.99
16543516--16543568	26	2.0	26	85	7	72	28	20	20	30	1.98
16544435--16544487	26	2.0	26	92	7	90	26	22	20	30	1.98
16544177--16544686	197	2.7	192	83	5	572	21	25	26	26	1.99
16549288--16549340	26	2.0	26	85	7	72	28	22	18	30	1.98
16550484--16550533	26	1.9	26	95	0	91	26	24	18	32	1.97
16550550--16550879	171	1.9	171	79	3	369	20	26	31	21	1.98
16550849--16550903	26	2.1	26	89	0	83	30	25	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16550748--16551087	184	1.8	185	83	4	445	20	28	27	23	1.99
16551036--16551088	26	2.0	26	85	7	72	28	26	16	28	1.97
16551536--16551588	26	2.0	26	92	7	90	26	24	20	28	1.99
16554233--16554603	158	2.3	157	78	6	345	21	28	28	22	1.99
16556029--16556491	159	2.9	159	76	4	461	19	28	29	22	1.98
16556829--16556881	26	2.0	26	88	0	79	28	30	15	26	1.96
16556855--16557250	159	2.5	157	73	6	357	20	26	31	21	1.98
16557569--16557908	158	2.2	157	81	2	369	21	25	27	25	1.99
16558455--16558504	26	1.9	26	84	8	66	28	22	18	32	1.97
16558691--16558981	159	1.8	159	83	5	392	17	25	30	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138