genome.fa.s124.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  96  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15370151--15370520	171	2.2	171	80	5	408	21	30	27	20	1.98
15370494--15370546	26	2.0	26	89	7	81	28	18	24	28	1.98
15370519--15370947	159	2.7	159	77	2	385	24	30	27	17	1.97
15367596--15371100	870	4.0	865	76	7	3104	23	29	26	20	1.99
15370996--15371048	26	2.0	26	85	0	70	26	20	24	28	1.99
15372253--15372576	171	1.9	171	79	1	371	23	30	25	20	1.98
15372743--15373105	159	2.3	158	81	5	410	23	30	26	19	1.98
15373995--15374073	26	3.0	25	90	3	122	25	18	27	27	1.98
15374417--15374911	196	2.5	196	89	2	715	22	27	27	22	1.99
15374832--15374884	26	2.0	26	89	7	81	22	16	30	30	1.96
15374417--15374956	197	2.7	196	85	5	723	22	27	27	22	1.99
15374626--15376130	696	2.2	695	80	2	1701	23	27	27	21	1.99
15376237--15376763	169	3.2	160	78	8	480	24	30	24	21	1.99
15376387--15376907	158	3.3	157	77	4	526	23	30	25	20	1.99
15376881--15376933	26	2.0	26	89	7	81	24	16	28	30	1.97
15377048--15377082	12	2.9	12	100	0	70	8	34	22	34	1.85
15378441--15378493	26	2.0	26	89	7	81	28	22	24	24	2.00
15378466--15378912	159	2.8	159	79	4	449	25	29	26	19	1.98
15378942--15378994	26	2.0	26	92	0	88	28	18	24	28	1.98
15379666--15379718	26	2.0	26	92	0	88	30	20	24	24	1.99
15380012--15380061	26	1.9	26	95	0	91	26	20	30	24	1.98
15380173--15380706	158	3.4	159	77	5	510	24	30	25	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15380681--15380732	26	2.0	26	92	0	86	25	17	28	28	1.97
15379692--15381679	672	3.0	672	90	1	2916	23	29	26	20	1.99
15380877--15381378	158	3.2	158	76	5	512	25	30	25	19	1.98
15380869--15381322	159	2.9	158	77	4	484	25	30	26	18	1.98
15381353--15381404	26	2.0	26	92	0	86	25	17	28	28	1.97
15388935--15389437	158	3.2	157	75	8	482	24	28	25	21	1.99
15390054--15390410	159	2.3	159	76	10	363	25	29	25	19	1.99
15390392--15390444	26	2.0	26	89	7	81	24	16	28	30	1.97
15390233--15390838	310	2.0	309	85	1	820	24	28	27	19	1.99
15390417--15390662	126	2.0	125	83	4	316	24	28	29	17	1.97
15391043--15391095	26	2.0	26	89	7	81	30	15	22	32	1.94
15391068--15391507	160	2.8	157	79	5	481	22	30	27	18	1.97
15391938--15392433	159	3.1	158	76	6	473	23	29	26	20	1.99
15390543--15392528	859	2.3	847	82	4	2428	23	28	27	20	1.99
15392404--15392456	26	2.0	26	89	7	81	24	16	28	30	1.97
15393163--15393664	158	3.2	156	77	7	473	23	31	27	17	1.97
15393638--15393690	26	2.0	26	92	0	88	24	18	28	28	1.98
15394557--15394607	26	2.0	26	92	0	84	23	19	31	25	1.98
15394923--15394975	26	2.0	26	92	0	88	26	20	26	26	1.99
15394764--15395328	195	3.0	182	77	10	589	23	27	27	21	1.99
15395118--15395170	26	2.0	26	92	0	88	30	20	22	26	1.98
15395618--15395670	26	2.0	26	85	7	72	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15396335--15396387	26	2.0	26	89	7	81	30	18	22	28	1.98
15396362--15396983	158	4.0	155	76	5	536	22	31	28	17	1.97
15396360--15396983	314	2.0	315	80	5	706	22	31	28	17	1.97
15396991--15397043	26	2.0	26	88	0	79	26	15	26	32	1.95
15398033--15398085	26	2.0	26	92	7	90	28	20	24	26	1.99
15397490--15398193	356	2.0	356	84	2	930	22	29	28	19	1.98
15399497--15399549	26	2.0	26	85	0	70	26	16	26	30	1.97
15400098--15400150	26	2.0	26	92	0	88	32	18	20	28	1.97
15401076--15401370	159	1.9	159	82	0	374	23	30	26	19	1.98
15401871--15401920	26	1.9	26	92	8	84	30	20	24	26	1.98
15401897--15402325	158	2.7	159	80	6	440	23	27	27	21	1.99
15401963--15402325	159	2.3	158	81	5	437	22	28	28	21	1.99
15402223--15402821	159	3.8	157	75	6	440	24	29	26	19	1.98
15404053--15404409	159	2.3	158	83	4	418	25	31	24	19	1.98
15404053--15404489	159	2.8	158	79	5	402	25	30	25	18	1.98
15405282--15405932	158	4.1	157	77	6	573	23	30	26	18	1.98
15405906--15405958	26	2.0	26	96	0	97	24	20	28	26	1.99
15405849--15406148	159	1.9	159	86	2	424	21	27	25	25	1.99
15406472--15407112	159	4.0	159	75	7	430	23	29	26	19	1.99
15407106--15407158	26	2.0	26	85	0	70	24	15	28	32	1.95
15407052--15407354	158	1.9	157	87	1	437	22	26	25	25	2.00
15407264--15407316	26	2.0	26	88	0	79	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15407445--15407497	26	2.0	26	92	0	88	26	20	26	26	1.99
15408008--15408060	26	2.0	26	88	0	79	24	16	28	30	1.97
15408728--15409221	159	3.1	159	78	3	467	23	29	26	20	1.99
15409202--15409253	26	2.0	26	88	0	77	26	17	26	28	1.97
15410477--15410930	159	2.9	156	78	7	495	22	29	28	19	1.98
15410455--15410943	158	3.1	155	78	7	518	21	30	28	19	1.98
15411677--15411729	26	2.0	26	88	0	79	32	20	22	24	1.98
15411702--15412203	159	3.2	157	76	3	418	22	29	27	20	1.98
15412179--15412229	26	2.0	26	92	0	84	27	19	27	25	1.99
15412425--15412752	177	1.9	176	82	4	419	26	27	26	19	1.99
15412656--15413157	159	3.2	158	75	6	408	22	28	27	21	1.99
15412977--15413737	184	4.0	185	77	10	683	24	27	26	21	1.99
15413316--15413368	26	2.0	26	88	0	79	28	20	24	26	1.99
15414209--15414789	197	3.0	186	73	16	530	24	28	26	20	1.99
15414368--15414420	26	2.0	26	88	0	79	28	20	24	26	1.99
15415610--15415662	26	2.0	26	88	0	79	22	20	28	28	1.99
15415616--15415669	26	2.0	26	85	3	72	24	20	27	27	1.99
15415819--15415871	26	2.0	26	82	7	63	28	22	20	28	1.99
15416266--15416318	26	2.0	26	85	7	72	24	18	28	28	1.98
15416462--15416514	26	2.0	26	92	7	90	28	20	24	26	1.99
15416488--15416891	159	2.5	158	77	6	343	24	28	28	18	1.98
15417382--15417433	26	2.0	26	92	7	88	28	19	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15417565--15417617	26	2.0	26	89	7	81	30	20	22	26	1.98
15418768--15418818	26	2.0	26	92	0	84	27	17	29	25	1.98
15417381--15420239	698	4.1	697	78	7	2537	23	29	26	20	1.99
15418763--15419120	196	1.8	196	82	2	468	24	27	26	21	1.99
15419673--15419725	26	2.0	26	85	7	72	26	18	26	28	1.98
15419698--15420063	159	2.3	159	79	4	398	23	29	26	20	1.99
15419698--15420115	159	2.6	154	76	8	390	23	28	28	19	1.98
15420187--15420239	26	2.0	26	89	7	81	28	18	24	28	1.98
15420344--15420676	171	2.0	170	82	3	409	23	30	26	19	1.98
15421434--15421486	26	2.0	26	92	7	90	28	20	24	26	1.99
15421460--15421961	158	3.2	156	75	8	487	22	29	27	19	1.98
15422566--15422598	11	3.0	11	83	16	50	18	36	27	18	1.94
15422668--15422720	26	2.0	26	85	7	72	26	18	24	30	1.98
15423510--15423562	26	2.0	26	92	0	88	26	20	26	26	1.99
15423865--15424365	158	3.2	158	78	5	442	23	30	26	19	1.98
15424340--15424391	26	2.0	26	88	7	79	26	17	26	28	1.97
15425233--15425713	158	3.0	157	77	6	405	21	30	28	19	1.98
15425728--15425780	26	2.0	26	88	0	79	26	18	26	28	1.98
15432365--15432417	26	2.0	26	89	7	81	30	20	22	26	1.98
15433385--15433437	26	2.0	26	89	7	81	30	18	22	28	1.98
15433728--15433780	26	2.0	26	85	7	72	24	15	28	32	1.95
15434610--15434662	26	2.0	26	88	0	79	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15435341--15435393	26	2.0	26	85	7	72	26	16	28	28	1.97
15436064--15436116	26	2.0	26	92	7	90	28	20	24	26	1.99
15437268--15437320	26	2.0	26	89	7	81	28	20	22	28	1.99
15437293--15437678	153	2.5	152	76	8	366	26	30	24	18	1.98
15437764--15437817	26	2.1	26	92	0	90	25	20	27	25	1.99
15439361--15439413	26	2.0	26	88	0	79	24	20	26	28	1.99
15439675--15439786	53	2.1	53	88	0	161	16	41	16	25	1.88
15439795--15439852	26	2.2	27	87	9	84	31	20	20	27	1.98
15440138--15440190	26	2.0	26	88	0	79	26	18	26	28	1.98
15441070--15441110	13	3.2	13	92	0	73	24	21	46	7	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138