genome.fa.s124.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  18  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4982993--4983065	29	2.4	30	72	4	76	43	0	1	54	1.08
4989626--4989660	15	2.5	15	90	9	56	57	0	14	28	1.38
4990855--4990905	25	2.0	25	92	0	84	47	29	3	19	1.68
4992110--4992172	2	33.5	2	83	12	80	49	3	0	47	1.17
4992400--4992559	77	2.1	74	78	13	164	42	6	5	46	1.51
4993456--4993507	20	2.6	20	84	6	70	48	3	0	48	1.20
4993819--4993938	64	1.9	63	84	6	161	43	9	11	35	1.73
4993595--4994302	365	1.9	363	85	6	959	39	10	12	37	1.78
4994196--4994365	63	2.7	62	84	5	198	42	11	12	32	1.79
4994381--4994533	63	2.5	62	78	12	145	37	14	13	34	1.85
4994827--4994860	10	3.4	10	83	0	50	23	50	0	26	1.50
4994822--4994860	20	2.0	19	95	5	69	20	51	0	28	1.48
4997253--4997314	31	2.0	31	87	6	90	37	17	12	32	1.88
5000318--5000349	2	16.0	2	100	0	64	50	0	0	50	1.00
5001600--5001633	15	2.2	16	89	5	52	38	14	5	41	1.70
5005751--5005794	21	2.1	21	82	0	52	54	2	6	36	1.40
5006733--5006774	21	2.0	22	95	4	77	71	11	2	14	1.24
5006991--5007244	33	7.6	34	74	6	160	41	9	21	26	1.84
5006991--5007242	67	3.7	67	80	3	179	42	9	21	26	1.84
5007086--5007243	68	2.3	68	85	3	212	43	8	21	25	1.81
5007323--5007708	65	5.9	65	77	4	217	46	13	18	20	1.83
5007356--5007447	34	2.8	33	73	17	84	45	10	21	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5007408--5007698	130	2.2	130	82	3	336	47	13	17	21	1.81
5007345--5007699	195	1.8	195	80	8	427	47	13	18	21	1.82
5007473--5007723	65	3.9	65	79	7	278	46	13	17	22	1.83
5007457--5007708	130	1.9	130	86	3	355	47	13	17	22	1.82
5016346--5016387	21	2.0	22	90	4	68	69	7	4	19	1.31
5024874--5024930	20	2.7	21	82	15	73	78	0	15	5	0.91
5026186--5026218	14	2.4	14	94	0	57	33	0	21	45	1.52
5026412--5026484	35	2.1	35	84	0	92	42	16	5	35	1.71
5027008--5027170	66	2.5	65	83	5	168	22	22	10	44	1.83
5027047--5027170	65	1.9	66	85	5	171	23	22	10	43	1.84
5027339--5027484	66	2.2	65	80	4	168	19	19	13	48	1.80
5027339--5027504	34	5.0	32	72	14	90	20	18	13	47	1.82
5030334--5030371	18	2.1	19	85	5	51	39	7	10	42	1.69
5030934--5030974	20	2.0	21	86	13	59	34	2	2	60	1.23
5040388--5040414	14	1.9	14	100	0	54	44	0	0	55	0.99
5049455--5049568	57	2.0	56	93	1	192	20	9	20	50	1.76
5049977--5050006	15	2.0	15	93	0	51	30	6	13	50	1.67
5050567--5050607	15	2.9	15	82	10	50	21	0	2	75	0.92
5056926--5056988	28	2.4	26	82	15	69	46	19	3	31	1.65
5065919--5066668	371	2.0	370	86	2	1058	20	30	23	25	1.98
5068284--5068315	13	2.4	14	94	5	57	50	15	12	21	1.77
5076056--5076090	16	2.1	17	89	10	54	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5081676--5081790	56	2.1	56	93	0	194	25	18	19	37	1.94
5083531--5083666	67	2.0	67	92	0	227	41	19	15	23	1.90
5091830--5091864	18	1.9	18	94	0	61	25	20	31	22	1.98
5095093--5095135	18	2.4	18	80	7	52	62	0	2	34	1.08
5096245--5096309	21	3.1	21	80	12	64	46	0	1	52	1.10
5096397--5096458	28	2.2	28	82	5	72	51	3	1	43	1.27
5101659--5101718	25	2.4	25	94	2	104	26	5	15	53	1.62
5110459--5110509	15	3.3	15	78	13	50	5	19	1	72	1.15
5110473--5110514	20	2.2	19	86	4	57	2	26	2	69	1.13
5118891--5118977	22	3.9	21	73	20	70	59	4	1	34	1.25
5118890--5118954	26	2.6	25	78	19	66	58	4	1	35	1.28
5119120--5119168	23	2.0	27	84	15	70	55	2	2	40	1.23
5119189--5119239	14	3.8	14	82	7	61	60	0	1	37	1.08
5119305--5119339	3	11.3	3	93	6	61	31	0	0	68	0.90
5119304--5119337	16	2.1	16	100	0	68	29	0	0	70	0.87
5121323--5121359	3	12.3	3	100	0	74	0	32	0	67	0.91
5129530--5130213	339	2.0	340	96	0	1253	37	9	14	38	1.79
5130347--5130375	3	9.7	3	100	0	58	31	0	0	68	0.89
5131627--5131656	3	10.0	3	92	0	51	63	3	0	33	1.11
5133377--5133413	2	19.0	2	91	5	58	45	2	0	51	1.15
5138496--5138557	21	3.0	21	83	6	83	53	0	0	46	1.00
5138598--5138655	29	2.0	29	86	0	80	46	1	0	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5141291--5141356	29	2.2	32	89	8	102	39	18	18	24	1.92
5153075--5153131	24	2.4	24	85	5	71	56	3	17	22	1.56
5153274--5153327	22	2.5	22	96	0	99	38	16	11	33	1.84
5155784--5155827	22	2.0	22	95	0	79	43	13	11	31	1.80
5159272--5159306	18	1.9	18	88	0	52	37	25	14	22	1.92
5159477--5159561	23	3.6	23	90	3	116	40	17	27	15	1.89
5159709--5159752	22	2.0	22	95	0	79	43	13	11	31	1.80
5161155--5161212	25	2.3	25	84	0	71	36	15	29	18	1.92
5161256--5161302	24	2.0	24	87	8	69	59	4	14	21	1.52
5161757--5161800	22	2.0	22	95	0	79	43	13	11	31	1.80
5169775--5169894	56	2.2	56	89	4	190	40	3	27	29	1.72
5176825--5176861	2	18.5	2	100	0	74	48	0	0	51	1.00
5184437--5184531	40	2.4	40	80	16	110	52	3	4	40	1.37
5184469--5184707	130	1.8	129	90	0	388	50	5	5	38	1.50
5196776--5196802	1	27.0	1	100	0	54	0	0	0	100	0.00
5203060--5203095	18	2.0	18	88	0	54	38	8	13	38	1.75
5208544--5208800	138	1.9	138	85	1	363	38	17	22	21	1.93
5212666--5212704	2	20.5	2	84	10	55	53	0	46	0	1.00
5217160--5217198	12	3.3	11	83	16	51	69	0	0	30	0.89
5217223--5217283	32	1.9	31	93	3	104	55	4	3	36	1.38
5218822--5218861	19	2.1	19	90	0	62	57	0	0	42	0.98
5223993--5224100	36	3.0	36	98	0	207	36	14	22	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5224556--5224634	41	1.9	41	97	0	149	26	8	31	32	1.87
5225231--5225307	37	2.1	37	92	4	129	35	6	28	29	1.82
5226600--5226635	17	2.2	16	90	5	54	86	2	2	8	0.77
5231333--5231374	2	21.5	2	95	4	77	50	0	0	50	1.00
5244278--5244333	26	2.0	28	83	10	71	39	0	0	60	0.97
5244484--5244596	28	4.0	28	69	17	83	49	0	2	46	1.21
5244494--5244565	13	5.3	12	73	22	54	52	0	1	45	1.09
5244759--5245026	139	1.9	139	85	1	367	39	10	7	41	1.68
5249215--5249282	32	2.1	32	83	5	84	51	1	1	45	1.19
5249259--5249309	19	2.7	19	75	9	50	60	1	1	35	1.19
5251834--5251973	68	2.0	69	97	1	264	45	24	10	20	1.82
5259046--5259071	13	2.0	13	100	0	52	30	38	7	23	1.83
5266592--5266635	23	1.9	23	86	9	63	38	9	6	45	1.63
5270588--5270864	138	2.0	138	96	0	509	37	4	8	49	1.53
5272223--5272266	22	2.0	21	86	4	61	43	2	4	50	1.35
5273971--5274021	20	2.3	23	83	12	63	56	1	0	41	1.10
5274044--5274101	27	2.1	28	87	3	82	32	1	1	63	1.14
5274901--5274961	23	2.7	23	85	9	74	39	1	1	57	1.18
5275446--5275478	15	2.1	17	88	11	52	51	12	0	36	1.39
5278190--5278254	34	1.9	34	83	0	85	36	4	1	56	1.29
5288751--5288797	21	2.2	22	85	7	62	61	4	4	29	1.34
5289451--5289548	34	2.8	34	71	18	85	43	2	2	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5290112--5290197	36	2.4	37	79	14	92	56	0	0	43	0.99
5290143--5290205	18	3.6	18	80	2	65	58	0	0	41	0.98
5290216--5290271	22	2.5	22	80	13	60	58	1	5	33	1.31
5290277--5290384	21	5.4	21	67	14	84	45	1	2	50	1.27
5291394--5291422	8	3.8	8	90	9	51	0	10	0	89	0.48
5292644--5292670	2	13.5	2	100	0	54	51	0	0	48	1.00
5294308--5294348	21	2.0	21	85	9	57	65	0	4	29	1.13
5295567--5295609	6	6.8	6	81	7	50	44	0	0	55	0.99
5295571--5295611	19	2.2	18	91	4	64	43	0	0	56	0.99
5295719--5295751	17	2.0	17	88	5	50	72	0	0	27	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138