genome.fa.s124.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  25  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6454617--6454679	28	2.2	29	80	2	83	52	12	4	30	1.60
6461422--6461451	2	15.0	2	100	0	60	50	0	0	50	1.00
6469419--6469446	14	2.0	14	100	0	56	57	0	0	42	0.99
6469471--6469520	22	2.3	22	82	3	57	60	6	4	30	1.39
6469628--6469740	22	5.5	21	72	14	76	55	0	0	42	1.12
6469724--6469865	12	12.0	12	67	25	63	56	1	0	41	1.13
6469679--6469918	38	6.7	38	72	19	139	54	0	0	44	1.11
6469727--6469873	68	2.1	68	81	12	176	56	1	0	41	1.13
6469653--6469875	122	1.8	124	84	10	314	55	1	0	43	1.12
6469717--6469917	84	2.4	84	79	7	205	54	0	0	43	1.13
6469735--6469887	35	4.4	33	73	16	105	55	1	0	42	1.13
6469731--6469919	53	3.4	54	77	13	172	55	1	1	42	1.14
6469654--6469918	15	17.6	15	68	23	141	54	1	0	43	1.13
6469949--6470036	19	4.9	18	73	16	67	46	1	1	51	1.15
6469968--6470023	17	3.1	17	78	12	58	41	0	1	57	1.09
6470005--6470043	16	2.5	16	87	4	53	48	2	0	48	1.15
6470015--6470078	26	2.5	25	82	9	85	48	3	1	46	1.27
6475963--6476015	16	3.2	16	86	5	61	67	0	1	30	1.01
6476054--6476124	27	2.6	27	76	12	65	61	2	4	30	1.29
6476272--6476306	10	3.6	10	88	3	54	34	0	0	65	0.93
6480013--6480041	15	2.0	15	93	6	51	27	0	0	72	0.85
6485099--6485178	24	3.5	24	74	12	71	63	5	1	30	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6485288--6485329	21	2.0	22	81	13	52	38	4	2	54	1.34
6485521--6485567	24	2.0	24	91	0	76	27	17	14	40	1.89
6493776--6493936	47	3.6	46	77	5	141	37	9	15	37	1.81
6493944--6494025	21	3.7	23	79	9	91	34	8	12	45	1.72
6493951--6494042	44	2.1	44	87	0	130	31	9	14	44	1.77
6494038--6494109	17	4.2	17	75	12	67	25	13	11	50	1.75
6494070--6494139	36	1.9	37	82	2	88	28	12	10	48	1.74
6494138--6494180	17	2.5	17	84	0	50	46	6	9	37	1.63
6494329--6494357	14	2.0	15	93	6	51	31	0	6	62	1.22
6505751--6505796	23	2.0	23	100	0	92	43	13	0	43	1.43
6512701--6512753	3	17.3	3	92	3	88	64	0	1	33	1.05
6517725--6517783	23	2.5	24	86	10	77	13	10	0	76	1.02
6517743--6517783	12	3.3	12	89	3	64	14	7	0	78	0.96
6517729--6517783	25	2.2	25	87	6	76	14	9	0	76	1.02
6517800--6517827	3	9.3	3	100	0	56	32	0	0	67	0.91
6519650--6519681	13	2.4	14	90	10	50	46	9	18	25	1.79
6522372--6522413	12	3.5	12	87	6	50	85	2	9	2	0.77
6532952--6533023	33	2.2	32	80	14	76	23	1	4	70	1.12
6532973--6533025	16	3.2	16	74	12	54	20	1	3	73	1.08
6533313--6533345	16	2.1	16	88	5	50	45	0	0	54	0.99
6535307--6535333	14	1.9	14	100	0	54	40	7	14	37	1.74
6535490--6535529	18	2.2	18	86	0	53	7	15	2	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6535508--6535539	11	2.6	13	90	9	50	6	9	3	81	0.97
6535500--6535535	18	1.9	18	88	5	54	8	13	2	75	1.15
6535557--6535626	18	3.8	18	75	3	59	61	5	4	28	1.38
6535543--6535628	6	14.2	6	68	10	50	60	5	4	29	1.40
6536167--6536264	35	2.8	34	76	14	92	35	10	17	36	1.84
6536343--6536389	17	2.9	16	78	6	58	42	12	12	31	1.81
6536345--6536443	33	3.0	33	73	8	103	40	9	13	37	1.76
6536345--6536423	16	4.8	16	71	9	52	40	11	12	35	1.79
6536470--6536500	16	1.9	16	93	0	53	38	16	16	29	1.90
6536496--6536639	17	8.4	17	71	11	78	35	8	18	37	1.81
6536491--6536597	35	3.1	34	75	9	92	34	7	16	41	1.77
6537176--6537459	62	4.7	60	83	11	332	33	13	6	47	1.68
6537176--6537476	61	4.9	59	79	11	315	32	12	6	48	1.67
6537491--6537547	18	3.0	18	79	20	71	82	0	1	15	0.75
6537484--6537547	17	3.7	17	78	14	60	81	0	3	15	0.82
6537485--6537556	26	2.5	30	78	17	82	80	0	2	16	0.83
6537491--6537552	8	7.9	8	78	10	74	82	0	1	16	0.75
6537491--6537578	27	3.6	25	83	11	85	78	0	3	18	0.89
6537581--6537620	4	9.8	4	91	2	62	52	2	0	45	1.14
6538158--6538188	10	3.0	10	90	9	53	58	9	0	32	1.31
6538449--6538530	18	4.7	17	72	19	62	67	3	9	19	1.35
6538449--6538530	36	2.3	35	78	17	98	67	3	9	19	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6538585--6538621	3	12.7	3	94	5	67	67	0	0	32	0.91
6538589--6538617	14	2.1	14	100	0	58	65	0	0	34	0.93
6540622--6540685	18	3.9	17	75	20	57	3	12	4	79	1.00
6540641--6540685	14	2.9	16	78	18	51	4	8	6	80	1.03
6540619--6540688	16	4.4	16	69	18	56	4	11	4	80	1.00
6545351--6545538	103	1.8	103	87	4	281	34	9	12	44	1.74
6545702--6545776	19	4.1	19	77	12	70	53	12	4	30	1.56
6545898--6545927	3	10.0	3	100	0	60	66	0	0	33	0.92
6546399--6546472	19	3.9	19	76	1	78	55	22	2	18	1.55
6547081--6547151	6	11.8	6	73	11	65	63	5	0	30	1.17
6547081--6547128	19	2.6	19	83	3	62	64	6	0	29	1.18
6551748--6551831	6	14.0	6	80	5	89	26	1	7	65	1.25
6551749--6551831	12	6.9	12	82	5	105	25	1	7	66	1.25
6551748--6551831	24	3.5	24	86	3	116	26	1	7	65	1.25
6552396--6552453	20	3.0	19	92	5	91	34	6	10	48	1.64
6552497--6552536	21	1.9	21	89	0	62	27	7	12	52	1.66
6552506--6552549	21	2.1	21	83	8	54	34	9	9	47	1.67
6552526--6552593	31	2.1	34	83	8	88	29	5	14	50	1.67
6552568--6552641	20	3.2	24	72	16	75	29	2	9	58	1.44
6555550--6555589	17	2.4	17	91	4	64	67	2	0	30	1.04
6555619--6555660	16	2.5	17	92	3	68	54	7	2	35	1.41
6555700--6555736	18	2.1	18	90	5	58	64	5	2	27	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6555507--6555784	75	3.7	75	89	1	407	49	5	8	36	1.56
6561546--6561585	20	2.0	20	85	9	55	77	2	15	5	1.04
6561919--6561960	15	2.9	15	82	6	52	83	0	9	7	0.81
6562198--6562241	22	2.0	22	100	0	88	22	18	13	45	1.84
6563119--6563376	79	3.3	78	83	5	322	35	10	19	34	1.87
6563649--6563851	41	4.9	41	81	8	182	23	11	20	43	1.85
6563649--6563837	42	4.6	41	81	8	195	23	11	21	43	1.84
6563649--6563854	83	2.5	83	82	5	222	24	11	20	43	1.85
6563823--6564026	44	4.7	44	82	3	232	22	11	18	47	1.80
6563859--6564021	87	1.9	88	89	1	256	21	11	19	48	1.79
6563863--6564172	87	3.6	85	71	10	207	26	10	18	43	1.83
6564084--6564163	41	2.0	41	89	0	124	31	13	18	36	1.90
6565153--6565194	3	14.7	3	81	18	54	28	0	0	71	0.86
6565153--6565194	5	7.3	6	92	7	54	28	0	0	71	0.86
6565227--6565276	6	8.8	6	82	12	54	30	0	0	70	0.88
6565227--6565279	18	3.2	18	87	12	78	28	0	0	71	0.86
6565227--6565287	22	2.7	21	85	10	68	27	0	0	72	0.85
6565362--6565401	17	2.4	17	91	4	64	67	7	0	25	1.16
6565303--6565601	75	3.9	75	85	7	356	51	5	8	35	1.54
6565437--6565473	17	2.1	19	90	10	60	67	2	2	27	1.17
6565303--6565596	151	1.9	152	84	6	393	51	4	8	35	1.52
6573182--6573652	235	2.0	236	86	2	653	33	13	17	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6577580--6577635	3	19.3	3	89	7	89	32	0	1	66	1.03
6577742--6577955	107	2.0	107	98	0	410	40	18	10	30	1.84
6580597--6580845	124	2.1	117	80	10	261	44	6	8	39	1.61
6585089--6585133	23	2.0	24	91	8	76	75	0	15	8	1.03
6585098--6585161	23	2.8	23	75	0	65	75	0	17	7	1.04
6585931--6585974	15	3.1	15	78	15	58	34	18	9	38	1.82
6586742--6586844	36	2.8	37	81	10	104	30	10	11	47	1.74
6586792--6586874	18	4.6	18	83	4	105	28	12	12	46	1.77
6586792--6586874	36	2.3	37	85	8	118	28	12	12	46	1.77
6586990--6587049	22	2.7	21	78	14	68	36	8	6	48	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138