genome.fa.s124.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  19  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5299443--5299472	15	2.0	15	93	0	51	36	0	3	60	1.14
5299523--5299548	2	13.0	2	100	0	52	50	0	0	50	1.00
5299805--5299830	6	4.3	6	100	0	52	65	0	34	0	0.93
5299938--5299976	16	2.4	16	86	0	51	0	25	0	74	0.82
5299958--5299994	6	6.5	6	81	12	51	0	16	0	83	0.64
5299936--5299994	22	2.8	22	82	5	68	0	23	0	76	0.79
5299948--5299994	16	2.9	16	90	0	67	0	19	0	80	0.70
5303931--5303999	30	2.3	29	85	5	84	42	15	1	40	1.56
5312024--5312063	19	2.0	20	86	13	57	47	0	10	42	1.37
5312642--5312691	26	1.9	26	92	8	84	48	2	0	50	1.12
5312640--5312701	26	2.3	26	83	10	81	53	1	0	45	1.10
5312836--5312962	30	4.3	30	80	5	125	55	3	4	36	1.36
5314160--5314208	25	2.0	25	83	0	62	55	4	2	38	1.31
5314268--5314312	2	24.5	2	80	17	53	46	0	2	51	1.13
5315727--5315779	22	2.3	24	93	6	92	39	0	0	60	0.97
5315805--5315846	19	2.2	19	86	4	57	61	0	0	38	0.96
5318177--5318220	22	2.0	22	95	0	79	31	15	13	38	1.87
5323152--5323184	16	2.1	16	88	11	50	66	0	0	33	0.92
5324152--5324181	6	5.0	6	91	0	51	16	20	33	30	1.94
5327375--5327417	16	2.7	15	79	10	50	37	0	2	60	1.10
5327392--5327439	25	2.0	23	84	8	60	43	0	2	54	1.12
5327914--5327964	20	2.5	20	93	6	86	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5328014--5328066	19	2.8	20	82	8	74	66	0	0	33	0.92
5328622--5328664	12	3.4	12	80	6	50	44	0	0	55	0.99
5328614--5328664	25	2.0	26	88	11	79	43	0	0	56	0.99
5337356--5337415	16	3.7	16	78	10	59	53	5	0	41	1.23
5338886--5338946	28	2.1	30	81	6	72	59	0	3	37	1.14
5349133--5349298	86	1.9	88	86	2	237	25	14	10	49	1.76
5349367--5349418	26	2.0	26	96	0	95	38	13	7	40	1.73
5355166--5355237	29	2.4	30	86	6	92	50	0	1	48	1.09
5371886--5372038	40	3.8	40	76	5	157	33	20	11	34	1.88
5371873--5372040	80	2.1	81	85	4	232	34	19	11	34	1.88
5372379--5372557	96	1.9	96	83	2	234	29	20	18	31	1.96
5372489--5372634	78	1.9	78	79	0	166	30	19	17	31	1.95
5372690--5372727	20	1.9	20	94	0	67	26	26	23	23	2.00
5373056--5373133	32	2.4	33	84	2	113	25	15	12	46	1.81
5373226--5373325	36	2.8	36	86	6	123	34	18	16	32	1.92
5373258--5373482	70	3.2	70	71	13	181	29	12	18	40	1.86
5373237--5373465	36	6.4	36	77	7	171	29	13	19	37	1.90
5373218--5373540	142	2.3	141	74	9	300	29	14	17	39	1.89
5373669--5373748	36	2.3	36	82	6	94	30	13	13	42	1.83
5375538--5375573	15	2.3	16	90	4	56	19	2	0	77	0.88
5375924--5375984	8	7.2	8	73	10	50	77	1	3	18	0.99
5375922--5375963	22	1.9	22	85	9	59	76	0	2	21	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5375947--5375987	22	1.9	21	90	5	64	78	2	2	17	0.98
5376315--5376347	3	11.0	3	100	0	66	66	0	0	33	0.92
5383838--5384063	36	6.4	36	70	19	131	43	2	2	51	1.28
5383881--5384052	16	10.2	16	67	24	61	44	2	1	51	1.24
5383917--5384039	63	1.9	64	82	8	153	44	3	1	50	1.27
5383980--5384031	15	3.3	15	81	10	59	40	3	0	55	1.18
5383893--5384074	100	1.8	102	85	4	262	45	3	1	50	1.25
5383887--5384179	21	14.4	21	67	17	122	46	3	1	49	1.24
5384097--5384175	24	3.2	24	81	15	83	53	0	0	46	1.00
5384106--5384153	13	3.6	13	75	13	53	56	0	0	43	0.99
5384996--5385025	12	2.4	13	94	5	53	53	0	0	46	1.00
5388023--5388073	18	2.8	19	76	11	61	17	9	15	56	1.65
5396395--5396419	4	6.2	4	100	0	50	76	0	0	24	0.80
5396417--5396441	2	12.5	2	100	0	50	52	0	0	48	1.00
5400873--5400913	16	2.5	16	92	4	64	48	4	0	46	1.23
5400929--5400997	29	2.3	30	87	2	95	55	1	2	40	1.24
5404134--5404159	2	13.0	2	100	0	52	50	0	0	50	1.00
5409264--5409307	18	2.4	18	84	0	52	38	9	0	52	1.33
5409481--5409666	92	2.0	93	97	1	356	51	5	8	35	1.55
5410687--5410745	29	2.1	28	90	3	91	35	0	6	57	1.25
5410714--5410766	23	2.3	23	80	9	63	41	0	1	56	1.10
5410719--5410787	27	2.8	25	75	16	63	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5410809--5410864	23	2.5	22	81	18	64	60	1	1	35	1.17
5413063--5413419	18	20.2	17	69	24	183	42	0	2	54	1.18
5413144--5413407	5	54.2	5	65	21	64	43	0	1	54	1.14
5413071--5413427	71	5.0	70	78	15	338	42	0	2	54	1.19
5413178--5413303	28	4.6	27	71	20	84	43	0	0	54	1.11
5413272--5413419	33	4.3	34	78	13	144	43	0	2	54	1.14
5413068--5413335	93	3.0	89	78	17	245	42	0	2	54	1.18
5413185--5413415	127	1.8	123	81	9	288	43	0	2	54	1.16
5413460--5413491	16	2.0	16	93	0	55	46	0	9	43	1.35
5413550--5413612	22	2.9	22	87	0	99	30	12	7	49	1.69
5415648--5415692	20	2.2	20	92	0	72	24	11	15	48	1.77
5416058--5416107	23	2.2	23	100	0	100	38	32	22	8	1.83
5419614--5419674	15	4.0	15	76	4	59	24	1	26	47	1.61
5419605--5419674	31	2.3	30	85	5	86	24	2	24	48	1.64
5419622--5419686	16	4.2	15	82	5	67	23	1	26	49	1.59
5419753--5419798	16	2.9	17	87	12	71	23	0	26	50	1.50
5419979--5420031	3	17.7	3	100	0	106	32	0	0	67	0.91
5420081--5420120	18	2.1	20	86	9	57	22	7	0	70	1.12
5420220--5420253	3	11.3	3	93	0	59	67	2	0	29	1.05
5420817--5420856	22	1.9	22	85	10	57	5	2	10	82	0.91
5424903--5424959	24	2.5	22	80	11	60	7	1	8	82	0.91
5424925--5424959	17	2.1	17	88	0	52	2	0	11	85	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5424909--5424969	31	2.0	31	87	6	88	8	0	11	80	0.91
5424910--5424968	15	3.9	15	74	12	57	8	0	10	81	0.88
5424916--5424968	23	2.2	25	87	12	76	5	0	11	83	0.81
5424910--5424969	14	4.0	14	72	21	50	8	0	11	80	0.92
5425176--5425619	49	9.0	48	77	9	335	34	18	13	34	1.89
5425187--5425619	99	4.4	97	78	6	387	34	18	13	33	1.89
5435252--5435323	38	1.9	37	88	2	108	33	9	12	44	1.75
5436226--5436251	11	2.4	11	100	0	52	26	0	15	57	1.38
5436363--5436387	5	5.0	5	100	0	50	60	20	0	20	1.37
5440452--5440502	3	17.0	3	83	0	57	29	1	5	62	1.29
5443997--5444035	10	3.8	10	86	3	51	5	7	2	84	0.84
5443995--5444034	9	4.1	9	84	15	53	5	10	2	82	0.91
5444566--5444613	14	3.3	15	82	8	55	8	2	14	75	1.13
5445964--5445996	14	2.4	14	90	10	50	12	12	9	66	1.44
5446017--5446072	20	2.6	21	83	8	60	32	1	3	62	1.23
5446098--5446136	19	2.1	19	90	9	62	48	2	0	48	1.15
5447451--5447488	18	2.1	18	90	9	60	36	2	7	52	1.45
5447809--5447893	44	1.9	44	87	0	125	34	23	14	28	1.93
5449647--5449672	2	13.0	2	100	0	52	50	0	50	0	1.00
5453014--5453068	21	2.5	22	82	14	69	41	3	9	45	1.53
5453030--5453069	21	1.9	21	94	0	71	47	2	7	42	1.45
5455286--5455329	21	2.1	21	83	8	54	59	2	0	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5455540--5455571	2	16.0	2	100	0	64	50	0	0	50	1.00
5463052--5463080	2	14.5	2	100	0	58	48	0	0	51	1.00
5465027--5465079	26	2.0	26	92	7	90	22	11	20	45	1.83
5470679--5470703	7	3.6	7	100	0	50	56	0	0	44	0.99
5488488--5488547	32	1.9	31	86	3	84	25	16	18	40	1.91
5490400--5490524	59	2.1	59	92	0	214	38	8	21	31	1.84
5496244--5496273	2	15.5	2	93	6	53	50	0	0	50	1.00
5504430--5504508	38	2.1	38	82	0	95	41	11	11	35	1.77
5504534--5504637	30	3.4	29	84	7	127	51	3	5	38	1.44
5512019--5512082	32	1.9	33	81	12	78	43	3	1	51	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138