genome.fa.s124.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  80  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14111236--14111286	26	2.0	26	92	0	84	27	19	27	25	1.99
14111955--14112007	26	2.0	26	85	7	72	32	16	22	28	1.96
14112298--14112350	26	2.0	26	92	0	88	26	20	26	26	1.99
14112714--14112766	26	2.0	26	85	0	70	24	18	26	30	1.98
14112910--14112962	26	2.0	26	85	7	72	30	20	20	28	1.98
14113198--14113244	21	2.2	21	88	0	67	2	42	27	27	1.67
14113444--14113495	26	2.0	25	85	3	68	32	19	17	30	1.95
14113900--14113955	26	2.2	26	83	0	67	25	17	25	32	1.97
14114967--14115018	26	2.0	26	92	7	88	25	19	26	28	1.98
14115162--14115214	26	2.0	26	85	7	72	30	18	22	28	1.98
14115326--14115690	159	2.3	158	75	5	349	23	28	26	21	1.99
14115664--14115716	26	2.0	26	89	7	81	28	16	24	30	1.97
14116707--14116757	26	2.0	26	92	0	84	27	19	27	25	1.99
14116902--14116954	26	2.0	26	89	7	81	28	18	24	28	1.98
14116684--14117065	197	1.9	197	82	4	475	23	26	28	22	1.99
14117032--14117116	43	2.0	44	97	2	163	15	40	18	25	1.90
14117447--14117499	26	2.0	26	96	0	97	28	20	24	26	1.99
14117933--14117984	26	2.0	26	92	7	88	28	19	25	26	1.98
14117930--14119040	513	2.2	500	82	5	1293	23	28	26	21	1.99
14119493--14119552	26	2.4	26	83	10	72	28	18	25	28	1.98
14120458--14120510	26	2.0	26	96	0	97	28	20	24	26	1.99
14121681--14121759	26	3.0	26	94	3	133	29	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14121732--14122173	171	2.6	170	79	5	455	23	30	27	19	1.98
14122764--14123227	158	2.9	158	73	7	366	22	29	26	20	1.98
14123242--14123292	26	2.0	26	88	0	75	25	19	27	27	1.99
14124120--14124172	26	2.0	26	92	0	88	24	15	28	32	1.95
14124853--14124905	26	2.0	26	89	7	81	28	18	24	28	1.98
14126549--14126605	29	2.0	29	100	0	114	21	35	17	26	1.95
14127294--14127716	159	2.7	158	79	5	422	22	31	27	18	1.97
14127698--14127750	26	2.0	26	88	0	79	26	18	26	28	1.98
14127868--14128284	158	2.6	161	76	7	438	23	30	26	19	1.98
14129180--14129232	26	2.0	26	85	7	72	30	18	22	28	1.98
14129205--14129631	159	2.7	159	78	2	385	22	28	29	19	1.98
14129676--14129727	26	2.0	26	96	0	95	25	19	28	26	1.98
14131062--14131114	26	2.0	26	85	7	72	30	18	22	28	1.98
14131088--14131588	159	3.2	157	76	7	395	23	30	27	17	1.97
14131564--14131614	26	2.0	26	92	0	84	29	15	27	27	1.96
14132297--14132349	26	2.0	26	89	7	81	28	18	24	28	1.98
14132776--14132828	26	2.0	26	92	0	88	26	20	26	26	1.99
14133511--14133563	26	2.0	26	89	7	81	28	18	24	28	1.98
14133675--14134038	159	2.3	157	76	6	358	23	31	26	17	1.97
14134012--14134064	26	2.0	26	92	0	88	26	20	26	26	1.99
14135240--14135294	24	2.3	25	90	6	87	25	20	23	30	1.98
14135626--14135684	26	2.3	26	80	16	77	28	22	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14135652--14136459	158	5.2	157	69	10	420	25	29	25	19	1.99
14135651--14136452	307	2.6	308	83	3	950	25	29	25	19	1.98
14136433--14136485	26	2.0	26	92	0	88	26	16	26	30	1.97
14137145--14137197	26	2.0	26	85	7	72	30	20	22	26	1.98
14137655--14138155	159	3.2	158	74	5	409	23	29	26	20	1.99
14139269--14139321	26	2.0	26	88	0	79	26	16	28	28	1.97
14139992--14140044	26	2.0	26	89	7	81	26	20	26	26	1.99
14140711--14141140	159	2.7	157	78	7	429	24	29	27	19	1.98
14142350--14142402	26	2.0	26	96	0	97	28	20	28	22	1.99
14142197--14142463	133	2.0	133	83	2	331	29	26	25	19	1.98
14142850--14142902	26	2.0	26	88	0	79	30	18	22	28	1.98
14143032--14143329	158	1.9	158	81	4	368	23	30	28	17	1.97
14144208--14144260	26	2.0	26	92	7	90	24	22	26	26	2.00
14144551--14144603	26	2.0	26	88	0	79	28	18	26	26	1.98
14145181--14145213	11	3.0	11	95	0	57	15	27	30	27	1.96
14145283--14145335	26	2.0	26	85	7	72	28	20	26	24	1.99
14145495--14145994	157	3.2	157	75	8	426	22	30	28	19	1.98
14145968--14146020	26	2.0	26	89	7	81	28	18	24	28	1.98
14147644--14148144	158	3.2	158	75	7	473	23	30	26	19	1.98
14148560--14149061	158	3.2	158	71	8	410	22	31	26	19	1.98
14149939--14150275	159	2.1	158	80	5	385	23	31	27	17	1.97
14150256--14150308	26	2.0	26	85	0	70	26	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14150776--14150826	26	2.0	26	96	0	93	29	19	23	27	1.98
14151107--14151157	26	2.0	26	92	0	84	25	13	31	29	1.94
14151545--14151595	26	2.0	26	96	0	93	29	15	25	29	1.96
14151571--14152030	158	2.9	157	80	4	433	25	30	25	18	1.98
14151571--14151940	158	2.3	159	81	4	435	26	29	24	19	1.98
14151886--14152224	159	2.1	159	81	1	383	25	30	25	18	1.98
14151886--14152315	159	2.7	158	78	2	362	26	30	26	17	1.97
14153919--14153968	26	1.9	26	91	0	82	26	20	28	26	1.99
14154554--14154586	11	3.0	11	95	0	57	18	33	27	21	1.96
14154656--14154708	26	2.0	26	85	7	72	30	18	22	28	1.98
14154682--14155184	159	3.2	157	76	4	409	23	30	27	19	1.98
14155158--14155210	26	2.0	26	85	0	70	26	16	26	30	1.97
14155340--14155638	159	1.9	158	82	2	375	23	30	29	17	1.97
14155840--14155892	26	2.0	26	89	7	81	30	18	22	28	1.98
14156531--14156583	26	2.0	26	88	0	79	24	18	30	26	1.98
14156898--14156948	26	2.0	26	92	0	84	29	19	19	31	1.97
14161777--14161829	26	2.0	26	92	0	88	24	20	26	28	1.99
14162156--14162208	26	2.0	26	92	7	90	28	20	24	26	1.99
14162182--14162474	158	1.9	158	79	2	338	26	29	23	20	1.99
14162092--14162740	354	1.8	355	82	3	842	26	27	22	23	1.99
14163011--14163063	26	2.0	26	96	0	97	28	20	24	26	1.99
14163221--14163641	197	2.1	196	82	3	524	24	28	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14163589--14163659	26	2.7	26	95	4	126	30	18	21	29	1.97
14165022--14165074	26	2.0	26	88	0	79	26	11	26	35	1.90
14165364--14165415	25	2.0	26	88	3	79	25	15	28	30	1.96
14164863--14165743	353	2.5	340	79	9	914	23	28	26	21	1.99
14166812--14166862	26	2.0	26	92	7	86	29	15	23	31	1.95
14166902--14166979	26	3.0	26	92	1	111	38	26	29	5	1.78
14167204--14167256	26	2.0	26	92	7	90	28	20	24	26	1.99
14168371--14168423	26	2.0	26	89	7	81	26	18	26	28	1.98
14169028--14169082	26	2.1	26	86	6	76	27	18	25	29	1.98
14169239--14169291	26	2.0	26	92	7	90	32	20	20	26	1.98
14169264--14169626	158	2.3	158	78	7	385	25	31	24	18	1.98
14169741--14169818	26	3.0	26	88	3	113	26	16	26	29	1.97
14169239--14170319	527	2.1	527	84	2	1402	23	28	26	20	1.99
14169792--14170293	158	3.2	158	78	5	465	23	28	27	20	1.99
14170267--14170319	26	2.0	26	92	0	88	24	18	28	28	1.98
14172728--14172780	27	2.0	27	88	0	79	20	5	13	60	1.53
14173190--14173776	159	3.7	160	75	6	477	25	30	26	17	1.97
14173188--14173839	316	2.1	315	82	3	794	25	30	25	18	1.98
14173950--14173990	21	2.0	21	85	9	57	7	36	26	29	1.83
14174188--14174240	26	2.0	26	89	7	81	28	18	24	28	1.98
14173660--14174349	367	1.9	366	80	4	809	24	29	25	20	1.99
14174213--14174573	159	2.3	159	76	3	359	21	30	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14174715--14175050	158	2.1	158	82	4	392	24	26	27	22	2.00
14175176--14175228	26	2.0	26	92	7	90	28	20	24	26	1.99
14174688--14175594	488	1.9	488	82	3	1153	26	27	25	20	1.99
14175521--14175571	26	2.0	26	92	0	84	31	17	25	25	1.97
14175362--14175693	184	1.8	184	81	3	418	23	30	27	18	1.98
14175860--14175912	26	2.0	26	92	0	88	24	18	28	28	1.98
14175175--14175982	341	2.4	343	84	2	1097	25	29	26	18	1.98
14176582--14176634	26	2.0	26	92	7	90	30	16	22	30	1.96
14177451--14177503	26	2.0	26	89	7	81	28	22	22	26	1.99
14177928--14177981	26	2.1	26	85	0	72	31	18	22	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138