genome.fa.s124.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  60  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12519370--12519622	133	1.9	133	83	1	328	14	30	34	20	1.92
12531704--12531911	45	4.6	45	71	6	152	18	28	31	21	1.96
12532052--12532255	45	4.6	45	81	2	223	16	33	30	19	1.93
12532065--12532255	44	4.3	44	81	4	195	15	33	31	18	1.93
12536421--12536473	26	2.0	26	100	0	106	26	16	26	30	1.97
12537406--12537791	45	8.6	44	71	7	186	17	29	31	20	1.96
12537427--12537791	90	4.1	90	75	3	295	16	28	32	21	1.96
12537792--12538730	45	20.3	45	72	8	510	17	31	30	20	1.96
12538108--12538171	23	2.7	23	85	2	83	28	34	18	18	1.95
12537932--12538346	227	1.8	227	81	4	514	18	31	29	20	1.96
12537907--12538418	272	1.9	273	83	3	665	18	31	29	20	1.96
12538381--12538426	24	1.9	24	90	0	74	23	30	23	21	1.99
12538334--12538471	69	2.0	69	85	0	186	19	32	26	21	1.97
12538244--12538555	159	2.0	159	82	2	385	18	33	28	19	1.95
12538135--12538649	249	2.1	249	83	0	645	17	32	30	20	1.95
12542724--12542776	26	2.0	26	92	0	88	28	22	24	24	2.00
12542553--12542947	196	2.0	197	81	2	454	22	27	27	23	1.99
12543526--12543560	11	3.2	11	91	0	52	14	34	28	22	1.93
12543731--12544160	45	9.5	45	73	6	215	18	31	30	19	1.96
12544143--12544188	24	1.9	24	90	0	74	21	34	23	19	1.96
12544174--12544370	45	4.4	45	78	1	198	16	33	30	18	1.94
12544060--12544279	114	1.9	114	85	0	305	18	33	29	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12544174--12544364	90	2.1	90	84	1	240	16	33	30	18	1.94
12544215--12544621	159	2.6	159	84	1	503	17	34	29	18	1.94
12544031--12544527	204	2.4	204	81	2	559	17	33	30	18	1.94
12544305--12544433	69	1.9	69	91	3	215	19	34	28	17	1.94
12544371--12544528	45	3.5	45	77	3	174	17	34	29	18	1.94
12544506--12544552	24	2.0	24	82	0	58	25	36	21	17	1.94
12544461--12544592	69	1.9	69	87	0	192	18	35	27	18	1.94
12544530--12544652	45	2.7	45	81	5	142	17	34	29	18	1.94
12546421--12546475	26	2.1	26	96	0	101	25	20	27	27	1.99
12548671--12548723	26	2.0	26	92	0	88	26	16	26	30	1.97
12548850--12548900	26	2.0	26	96	0	93	27	17	27	27	1.98
12548659--12549061	179	2.2	184	83	6	500	23	26	27	23	2.00
12549748--12549801	27	2.0	26	92	3	90	27	20	24	27	1.99
12549739--12550317	179	3.2	179	85	3	752	24	26	27	21	1.99
12550984--12551036	26	2.0	26	96	0	97	28	20	24	26	1.99
12551163--12551213	26	2.0	26	92	0	84	29	17	23	29	1.97
12550965--12551325	179	2.0	179	87	3	512	25	27	26	21	1.99
12552065--12552135	26	2.7	26	97	0	133	29	18	25	26	1.98
12552091--12552420	179	1.8	179	86	2	484	24	26	28	20	1.99
12553166--12553218	26	2.0	26	92	0	88	26	20	26	26	1.99
12554232--12554284	26	2.0	26	88	0	79	30	18	22	28	1.98
12554410--12554460	26	2.0	26	96	0	93	27	17	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12554229--12554563	178	1.9	177	81	4	415	24	23	28	23	2.00
12555304--12555356	26	2.0	26	92	0	88	30	20	22	26	1.98
12555483--12555533	26	2.0	26	88	0	75	31	17	23	27	1.97
12555302--12555694	179	2.2	179	86	5	547	23	26	27	22	1.99
12562445--12562495	26	2.0	26	100	0	102	27	19	25	27	1.99
12563484--12563534	26	2.0	26	92	0	84	27	17	23	31	1.97
12565436--12565488	26	2.0	26	92	0	88	24	18	26	30	1.98
12565615--12565665	26	2.0	26	96	0	93	27	17	21	33	1.96
12565417--12565826	179	2.3	179	82	4	491	23	25	27	24	2.00
12566501--12566551	26	2.0	26	88	0	75	29	11	27	31	1.92
12566489--12566889	179	2.2	179	81	4	453	24	26	26	22	2.00
12567553--12567604	26	2.0	25	92	3	86	26	19	25	28	1.98
12567534--12567887	179	2.0	178	86	0	501	24	27	26	21	1.99
12568618--12568669	26	2.0	26	92	7	88	32	19	21	26	1.97
12568796--12568872	26	3.0	26	86	7	120	28	16	25	28	1.97
12569841--12569891	26	2.0	26	96	0	93	29	15	23	31	1.95
12570020--12570070	26	2.0	26	96	0	93	29	19	21	29	1.98
12569690--12570176	179	2.7	179	84	1	634	23	26	28	21	1.99
12570924--12570975	26	2.0	26	96	0	95	28	19	25	26	1.98
12571100--12571150	26	2.0	26	92	0	84	29	17	23	29	1.97
12570900--12571311	176	2.3	176	82	5	459	24	25	27	22	2.00
12571647--12571834	88	2.1	88	90	0	286	35	19	14	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12573156--12573207	25	2.0	26	85	10	72	25	17	25	32	1.97
12574221--12574271	26	2.0	26	92	7	86	27	19	25	27	1.99
12575107--12575450	179	1.9	179	85	0	472	22	26	28	21	1.99
12576191--12576525	179	1.9	179	85	0	472	22	27	28	21	1.99
12577260--12577315	26	2.2	26	90	0	85	26	14	25	33	1.94
12577241--12577662	179	2.4	178	82	5	503	22	25	27	24	2.00
12577625--12577714	26	3.5	26	90	0	144	26	13	26	33	1.93
12578566--12578616	26	2.0	26	92	0	84	27	17	23	31	1.97
12578592--12578878	153	1.9	153	81	1	351	24	25	28	21	1.99
12579602--12579654	26	2.0	26	96	0	97	26	18	26	28	1.98
12580051--12580101	26	2.0	26	92	0	84	29	17	23	29	1.97
12580949--12581001	26	2.0	26	92	0	88	28	20	22	28	1.99
12581127--12581177	26	2.0	26	84	7	68	25	15	29	29	1.96
12582024--12582079	26	2.2	26	90	0	85	30	17	19	32	1.95
12582203--12582253	26	2.0	26	92	0	84	29	17	23	29	1.97
12582516--12582566	26	2.0	26	88	0	75	25	19	27	27	1.99
12582128--12582742	313	2.0	313	84	1	802	23	27	26	22	2.00
12583410--12583476	26	2.6	26	97	0	125	29	19	22	28	1.98
12583602--12583652	26	2.0	26	92	0	84	29	17	23	29	1.97
12584493--12584544	26	2.0	26	96	0	95	26	17	26	28	1.97
12584473--12584811	179	1.9	179	85	0	471	24	27	27	21	1.99
12585520--12586189	314	2.1	311	81	4	756	23	29	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12586170--12586222	26	2.0	26	89	7	81	24	18	28	28	1.98
12586195--12586557	171	2.1	170	80	4	401	22	29	26	21	1.99
12585981--12586660	367	1.9	355	81	6	828	23	28	27	20	1.99
12586562--12587064	158	3.2	155	75	8	442	24	30	26	19	1.98
12588613--12588665	26	2.0	26	85	0	70	22	18	32	26	1.97
12587955--12589274	343	3.9	341	83	2	1457	23	28	28	20	1.99
12587956--12589422	686	2.2	680	79	3	1474	23	28	28	20	1.99
12589786--12589835	26	1.9	26	91	0	82	26	14	28	32	1.94
12590130--12590182	26	2.0	26	88	0	79	24	16	28	30	1.97
12590339--12590697	184	2.0	184	83	2	461	24	27	25	22	2.00
12591001--12591051	26	2.0	26	92	0	84	29	15	27	27	1.96
12591366--12591418	26	2.0	26	89	7	81	32	22	20	24	1.98
12591866--12591918	26	2.0	26	85	7	72	22	20	30	26	1.98
12592592--12592644	26	2.0	26	92	7	90	28	20	24	26	1.99
12592618--12593116	159	3.1	155	76	6	360	24	28	25	21	1.99
12592777--12595495	342	7.8	343	75	7	1911	23	28	26	21	1.99
12592777--12594910	685	3.1	675	79	6	2126	23	28	27	21	1.99
12594474--12594526	26	2.0	26	88	0	79	24	16	28	30	1.97
12595211--12595627	159	2.6	158	76	7	355	24	27	26	20	1.99
12595687--12595739	26	2.0	26	85	0	70	26	18	28	26	1.98
12595370--12596349	343	2.9	342	81	3	1155	23	28	27	21	1.99
12596030--12596080	26	2.0	26	92	7	86	25	19	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12596885--12596935	26	2.0	26	88	0	75	29	17	23	29	1.97
12596568--12597306	344	2.2	342	80	3	813	24	28	26	20	1.99
12597229--12597278	26	1.9	26	91	0	82	28	22	26	24	1.99
12597438--12597808	185	2.0	185	85	4	500	24	29	26	19	1.99
12597624--12598441	158	5.2	158	75	6	719	23	30	27	19	1.98
12597623--12598441	317	2.6	317	83	2	1038	23	30	27	19	1.98
12598415--12598467	26	2.0	26	92	7	90	26	20	26	26	1.99
12599293--12599751	158	2.9	158	82	2	512	22	30	28	18	1.97
12599254--12599784	158	3.4	157	77	5	489	22	30	27	19	1.98
12601028--12601322	159	1.9	158	81	0	365	23	29	28	18	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138