genome.fa.s124.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  15  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4282914--4282946	16	2.1	16	88	11	50	42	0	3	54	1.15
4285029--4285063	18	1.9	18	94	0	61	42	20	5	31	1.75
4286154--4286186	17	2.1	17	88	11	52	36	12	0	51	1.39
4286465--4286506	9	4.7	9	80	11	50	66	0	0	33	0.92
4286477--4286511	16	2.2	16	90	10	54	71	0	0	28	0.86
4287851--4287892	21	2.0	21	90	9	68	45	0	26	28	1.54
4300494--4300543	22	2.1	22	82	10	55	32	4	0	64	1.12
4300677--4300736	25	2.5	24	86	8	77	46	1	0	51	1.10
4312881--4312908	14	2.0	14	100	0	56	14	7	64	14	1.48
4314839--4314894	16	3.4	16	72	18	53	21	0	1	76	0.87
4314837--4314892	5	10.6	5	80	17	53	21	0	1	76	0.87
4314924--4315010	25	3.3	25	77	18	88	32	2	2	63	1.19
4314947--4315085	34	4.3	34	72	20	88	30	3	4	61	1.32
4314860--4315052	12	14.4	13	69	20	98	28	5	2	64	1.26
4314980--4315043	26	2.5	26	82	7	69	29	6	3	60	1.36
4315999--4316336	60	5.7	59	82	7	391	43	6	12	37	1.68
4316000--4316344	118	2.9	116	83	6	417	43	6	12	37	1.70
4316000--4316336	178	1.9	177	85	6	466	43	6	12	37	1.68
4316322--4316363	19	2.2	19	95	0	75	35	11	11	40	1.79
4316263--4316421	77	2.1	77	93	1	273	39	8	13	38	1.75
4316203--4316471	136	2.0	136	88	5	400	40	7	13	38	1.73
4316341--4316592	58	4.3	58	83	6	310	40	7	13	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4316145--4316540	196	2.0	195	82	6	480	40	8	12	38	1.72
4316086--4316592	254	2.0	254	86	6	713	41	7	12	38	1.72
4318884--4318929	6	7.8	6	86	13	69	15	0	0	84	0.62
4318885--4318930	23	2.0	24	95	4	85	15	0	0	84	0.62
4318881--4318929	17	2.8	18	87	12	75	16	0	0	83	0.64
4318944--4319055	59	1.9	59	90	3	181	43	5	13	37	1.67
4318953--4319056	30	3.5	30	67	23	85	39	5	14	40	1.70
4319025--4319073	23	2.4	19	70	23	53	36	8	14	40	1.75
4319030--4319078	23	2.1	23	96	0	89	40	8	12	38	1.72
4318971--4319138	83	2.0	83	93	3	286	41	7	12	38	1.70
4319056--4319194	58	2.4	58	89	6	201	43	7	11	37	1.68
4319053--4319300	60	4.2	57	79	10	216	41	5	12	40	1.66
4324793--4324817	2	12.5	2	100	0	50	52	48	0	0	1.00
4335186--4335636	59	7.7	57	81	8	458	35	12	6	45	1.68
4335389--4335428	16	2.4	17	83	8	55	45	0	5	50	1.23
4335185--4335639	119	3.9	116	84	8	553	35	12	6	45	1.69
4335185--4335637	118	3.8	117	83	8	544	35	12	6	45	1.68
4336620--4336656	15	2.5	15	90	0	65	78	5	2	13	1.03
4336652--4336700	22	2.3	21	86	10	64	65	6	4	24	1.33
4336663--4336703	12	3.6	12	75	24	52	63	4	4	26	1.35
4336806--4336927	6	19.8	6	67	20	65	74	2	2	20	1.05
4336898--4336937	19	2.2	18	86	4	53	82	0	2	15	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4336852--4336943	27	3.4	25	76	13	85	77	2	3	17	1.01
4339077--4339103	2	13.5	2	100	0	54	48	0	0	51	1.00
4346284--4346353	21	3.4	21	68	14	56	15	22	28	32	1.95
4349436--4349460	2	12.5	2	100	0	50	48	0	0	52	1.00
4349604--4349637	12	2.9	12	86	4	52	5	29	0	64	1.17
4357468--4357511	22	2.0	22	90	0	70	50	13	2	34	1.55
4357481--4357523	22	2.0	22	81	9	52	60	9	0	30	1.28
4362396--4362438	22	2.0	22	90	0	68	46	11	6	34	1.67
4362398--4362450	22	2.4	22	81	6	54	50	9	7	32	1.62
4365979--4366028	23	2.2	23	82	7	57	44	2	0	54	1.11
4366449--4366484	19	1.9	18	88	5	54	50	0	8	41	1.33
4367424--4367481	25	2.2	26	87	6	82	44	8	15	31	1.76
4368179--4368222	11	4.1	11	83	13	56	50	0	2	47	1.13
4368924--4368953	12	2.5	12	94	0	51	3	40	0	56	1.16
4368925--4368966	18	2.3	18	87	0	57	7	35	2	54	1.41
4373369--4373411	21	2.2	20	87	8	61	58	34	2	4	1.32
4381362--4381410	25	2.0	25	88	4	73	48	2	2	46	1.25
4383491--4383544	22	2.5	22	77	16	69	51	12	0	35	1.40
4383511--4383591	41	1.9	43	87	12	123	51	8	1	38	1.41
4383511--4383602	41	2.2	43	84	9	118	51	9	2	36	1.47
4383699--4383726	2	14.0	2	100	0	56	50	0	0	50	1.00
4386355--4386403	20	2.5	19	80	12	55	61	2	2	34	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4387507--4387554	2	24.0	2	100	0	96	50	0	0	50	1.00
4406748--4406776	6	4.8	6	100	0	58	65	34	0	0	0.93
4407526--4407594	36	1.9	36	100	0	138	44	14	11	28	1.80
4410569--4410605	13	2.8	14	80	12	51	56	0	0	43	0.99
4415772--4415810	15	2.6	15	83	0	51	30	5	12	51	1.62
4423861--4425351	186	8.0	183	81	4	1366	35	13	10	39	1.80
4423861--4425333	556	2.6	555	83	2	1765	35	13	10	39	1.80
4423861--4425353	370	4.0	370	81	3	1510	35	13	10	39	1.80
4426000--4426090	25	3.6	25	80	2	94	27	5	26	40	1.78
4427532--4427584	21	2.5	21	73	11	54	47	20	16	15	1.83
4438533--4438561	2	14.5	2	100	0	58	0	51	0	48	1.00
4443509--4443568	9	6.4	9	74	14	50	60	6	0	33	1.23
4443491--4443566	33	2.2	33	83	11	89	59	6	0	34	1.24
4443951--4443992	15	2.9	15	80	16	52	69	4	0	26	1.08
4452260--4452298	17	2.2	18	90	4	62	2	64	0	33	1.08
4455329--4455370	22	1.9	22	81	18	52	33	11	7	47	1.68
4461539--4461571	12	2.5	13	90	9	50	87	9	3	0	0.63
4461539--4461571	16	2.1	16	88	11	50	87	9	3	0	0.63
4462705--4462733	14	2.0	15	93	6	51	62	6	31	0	1.22
4467790--4467819	15	2.0	15	100	0	60	60	6	6	26	1.47
4468032--4468066	9	3.7	9	85	14	52	34	0	0	65	0.93
4470960--4470996	15	2.5	15	90	0	65	32	54	13	0	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4473593--4473630	19	2.1	19	90	5	60	15	0	5	78	0.91
4477839--4477971	55	2.4	56	78	5	146	21	15	14	48	1.80
4478385--4478540	3	57.0	3	73	20	119	32	3	1	62	1.21
4478385--4478540	5	28.5	6	83	10	119	32	3	1	62	1.21
4479306--4479401	8	11.6	8	79	7	61	18	3	3	75	1.08
4479306--4479395	7	12.1	7	73	11	56	17	3	3	75	1.08
4479311--4479362	24	2.2	23	86	3	68	13	1	5	78	1.01
4479306--4479362	16	3.7	15	86	6	69	12	3	5	78	1.03
4479311--4479354	8	5.5	8	94	0	70	11	2	6	79	1.01
4479359--4479401	10	4.5	10	78	21	56	25	2	0	72	0.97
4479350--4479426	28	2.8	26	79	14	75	24	2	1	71	1.06
4479356--4479428	10	7.8	10	69	18	50	24	2	1	71	1.07
4479468--4479535	36	1.9	35	90	3	109	60	5	4	29	1.40
4479884--4480322	221	2.0	221	98	0	851	34	15	15	34	1.88
4483522--4483546	8	3.1	8	100	0	50	48	0	0	52	1.00
4483867--4483904	19	2.0	19	100	0	76	15	15	26	42	1.87
4488428--4488457	15	2.0	15	93	0	51	90	0	6	3	0.56
4488428--4488457	14	2.1	15	93	6	53	90	0	6	3	0.56
4503924--4503974	23	2.2	23	92	0	84	56	0	1	41	1.10
4503966--4504013	14	3.5	13	75	10	51	58	0	0	41	0.98
4503952--4504026	27	2.8	26	76	6	78	52	0	1	46	1.09
4505004--4505069	32	2.1	32	82	5	80	46	1	1	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4505460--4505507	23	2.1	22	81	14	53	54	4	0	41	1.20
4505570--4505600	16	2.0	16	93	6	55	51	3	0	45	1.17
4517093--4517150	24	2.4	24	94	0	107	44	18	6	29	1.76
4521400--4521469	37	1.9	35	85	5	95	48	0	8	42	1.33
4521512--4521547	18	2.1	18	89	5	56	22	0	2	75	0.94
4521582--4521628	10	4.8	10	85	12	62	78	0	0	21	0.75
4521582--4521625	21	2.2	20	87	4	61	77	0	0	22	0.77
4539830--4539874	21	2.1	22	87	4	65	31	6	0	62	1.21
4540886--4540930	24	2.0	23	91	8	74	42	22	13	22	1.88
4544325--4544398	37	2.0	37	97	0	139	35	14	21	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138