genome.fa.s124.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  44  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9539158--9539188	10	3.1	10	95	0	53	77	0	22	0	0.77
9539182--9539224	19	2.2	19	83	8	50	72	0	18	9	1.11
9539203--9539263	17	3.6	16	76	24	54	72	0	6	21	1.07
9539197--9539257	29	2.1	29	82	11	72	70	0	8	21	1.13
9541714--9541842	44	2.8	46	77	7	127	36	11	15	36	1.84
9542209--9542349	75	1.9	75	82	8	180	44	7	18	29	1.77
9542609--9542940	159	2.1	157	80	3	380	35	18	16	28	1.93
9542813--9543199	54	7.3	54	72	4	225	34	18	18	28	1.95
9542653--9542991	159	2.1	159	79	5	348	35	18	16	28	1.93
9542777--9543183	27	15.4	27	71	7	201	33	19	18	28	1.95
9543136--9543199	26	2.4	26	82	10	67	34	20	18	26	1.96
9543437--9543514	33	2.4	33	80	2	86	25	19	14	41	1.89
9544021--9544094	8	8.7	9	77	4	57	79	8	4	8	1.04
9546918--9546958	18	2.3	18	95	0	73	24	19	7	48	1.74
9550981--9551158	73	2.5	74	78	9	197	40	7	11	40	1.70
9552837--9552877	14	3.2	13	80	19	50	43	7	0	48	1.30
9552887--9552919	10	3.3	10	91	8	50	45	0	0	54	0.99
9552887--9552922	18	1.9	18	88	5	54	41	0	0	58	0.98
9553592--9553762	84	2.0	84	100	0	342	47	3	4	44	1.41
9556357--9556424	33	2.0	35	88	5	104	23	23	13	39	1.90
9559628--9559662	2	17.5	2	100	0	70	51	0	0	48	1.00
9559763--9559870	47	2.3	47	81	10	123	37	0	7	54	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9559824--9559869	20	2.2	20	84	3	56	39	2	2	56	1.24
9559833--9559870	20	1.9	20	88	0	58	36	2	5	55	1.37
9560330--9560472	22	6.4	22	74	9	101	40	7	5	46	1.56
9560364--9560599	11	21.5	11	65	12	65	41	6	4	47	1.49
9560564--9560668	22	4.7	23	79	9	85	31	7	3	57	1.45
9560723--9560764	21	2.0	22	86	13	61	33	2	4	59	1.31
9560746--9560779	16	2.2	16	94	5	61	35	5	5	52	1.50
9560836--9560946	45	2.5	44	77	12	109	38	5	2	53	1.38
9560922--9560958	11	3.4	11	84	0	56	35	2	5	56	1.36
9560920--9560966	22	2.1	22	88	0	67	38	4	4	53	1.40
9561254--9561859	44	13.7	44	68	12	159	37	6	6	50	1.54
9561294--9561457	87	1.9	87	80	7	190	37	3	7	51	1.45
9561279--9561465	66	2.8	65	78	10	186	37	4	6	51	1.47
9561254--9561457	22	9.3	22	75	6	155	38	3	6	50	1.48
9561603--9561677	22	3.5	22	75	14	75	34	10	5	49	1.60
9561603--9561727	65	1.9	65	80	6	146	34	8	5	51	1.57
9561818--9561875	22	2.6	22	81	7	73	34	10	1	53	1.45
9561916--9561954	14	2.8	14	80	11	53	38	7	0	53	1.30
9562007--9562103	44	2.2	43	81	3	104	36	4	6	53	1.45
9562008--9562105	22	4.5	22	67	13	58	36	4	6	53	1.45
9562766--9562813	24	2.0	24	88	12	71	64	4	0	31	1.12
9567436--9567473	2	18.5	2	94	5	67	47	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9579140--9579201	28	2.2	29	75	13	67	64	4	3	27	1.29
9583382--9583434	23	2.3	23	80	6	63	77	3	1	16	1.01
9584700--9584759	14	4.0	15	75	14	61	40	13	6	40	1.71
9584702--9584762	31	2.0	31	93	0	104	40	13	4	40	1.65
9584974--9585027	21	2.5	22	75	3	56	44	16	3	35	1.66
9586068--9586146	14	5.9	14	85	5	101	11	7	0	81	0.89
9586068--9586146	34	2.4	33	89	2	113	11	7	0	81	0.89
9586068--9586127	7	8.7	7	90	3	86	13	5	0	81	0.84
9589056--9589312	129	2.0	129	95	0	460	46	9	16	27	1.78
9590745--9590781	19	2.0	19	89	5	58	21	0	0	78	0.75
9590602--9590969	202	1.8	199	79	11	430	35	9	6	48	1.62
9590999--9591041	11	3.8	11	84	6	59	74	4	2	18	1.10
9594919--9594956	2	19.0	2	94	0	67	47	0	2	50	1.15
9597387--9597424	15	2.6	15	91	4	60	52	0	0	47	1.00
9597662--9597711	21	2.3	21	83	10	57	40	2	2	56	1.22
9603151--9603184	12	2.9	11	87	12	50	35	0	2	61	1.11
9612409--9612457	9	5.2	10	90	4	68	48	2	0	48	1.12
9612409--9612456	19	2.5	20	87	9	66	50	2	0	47	1.12
9612531--9612560	8	3.6	8	91	8	51	66	13	0	20	1.24
9612523--9612584	9	6.5	10	77	15	53	67	9	1	20	1.28
9612530--9612581	20	2.8	17	76	18	59	67	11	1	19	1.31
9612539--9612583	21	2.2	21	92	4	74	68	11	2	17	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9612866--9612908	18	2.3	18	84	11	52	34	0	2	62	1.08
9612880--9612952	28	2.5	30	73	10	71	41	2	2	53	1.29
9613135--9613212	19	4.2	17	76	14	66	42	0	1	56	1.07
9613097--9613212	28	4.2	26	79	11	97	38	1	2	56	1.23
9613134--9613212	9	8.4	9	77	18	72	41	0	1	56	1.07
9624157--9624326	89	1.9	90	90	6	272	50	11	4	33	1.60
9625003--9625068	34	1.9	34	90	0	105	50	4	4	40	1.43
9625001--9625068	14	4.3	15	68	23	50	51	4	4	39	1.42
9629014--9629070	27	2.1	27	86	0	78	71	0	14	14	1.14
9632845--9632886	20	2.0	22	86	13	61	42	2	7	47	1.43
9634035--9634075	18	2.3	18	86	0	55	29	0	2	68	1.03
9636815--9636855	21	2.0	21	85	9	57	43	12	17	26	1.84
9638110--9638176	26	2.6	25	82	15	91	47	5	1	44	1.36
9638368--9638427	29	2.0	30	83	3	77	50	5	3	41	1.41
9638506--9638581	29	2.5	29	76	6	71	55	3	0	40	1.18
9643361--9643399	14	2.9	13	85	14	53	7	0	7	84	0.77
9643355--9643392	20	1.9	20	84	10	51	10	0	7	81	0.87
9648591--9648639	22	2.3	22	96	3	91	57	10	16	16	1.65
9652582--9652628	24	2.0	23	92	8	78	55	8	0	36	1.31
9653562--9653599	2	19.0	2	88	0	58	52	0	2	44	1.14
9653746--9653783	18	2.2	17	90	4	58	47	0	0	52	1.00
9653975--9654019	16	2.9	16	86	3	56	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9656345--9656377	12	2.8	12	86	4	50	0	12	9	78	0.95
9663286--9663351	29	2.4	28	78	9	73	45	0	1	53	1.09
9663293--9663380	29	3.0	29	76	15	76	43	0	3	53	1.17
9663591--9663643	26	2.0	26	82	7	63	3	7	7	81	0.99
9665241--9665298	26	2.2	26	90	0	89	55	1	5	37	1.33
9668598--9668683	31	2.8	31	80	3	102	26	6	22	44	1.78
9669377--9669428	25	2.0	26	88	3	79	61	5	3	28	1.37
9670774--9670841	30	2.3	29	80	7	73	60	23	0	16	1.36
9671125--9671179	27	2.0	27	100	0	110	32	21	18	27	1.96
9671539--9671569	16	1.9	16	93	0	53	29	0	0	70	0.87
9674298--9674386	3	29.3	3	86	6	117	61	1	1	35	1.11
9674307--9674388	43	2.0	42	85	7	71	60	1	1	36	1.12
9674679--9674715	16	2.3	16	100	0	74	29	10	35	24	1.89
9674989--9675033	19	2.3	20	77	14	58	26	4	0	68	1.08
9685228--9685418	96	2.0	96	86	2	267	38	12	13	36	1.82
9685697--9685725	13	2.2	13	100	0	58	13	24	13	48	1.79
9690048--9690085	16	2.4	17	82	13	53	55	7	10	26	1.61
9690406--9690443	13	3.0	13	92	3	60	73	0	0	26	0.83
9692156--9692199	18	2.4	18	92	0	70	36	6	11	45	1.67
9692156--9692199	9	4.9	9	82	0	61	36	6	11	45	1.67
9694268--9694311	3	14.7	3	100	0	88	68	0	31	0	0.90
9702468--9702493	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9703952--9703996	21	2.1	21	83	0	54	42	2	0	55	1.12
9704058--9704086	2	14.5	2	100	0	58	48	0	0	51	1.00
9709998--9710134	66	2.1	65	82	2	159	45	3	26	24	1.69
9711884--9711909	11	2.4	11	100	0	52	92	0	7	0	0.39
9713028--9713265	84	2.8	84	83	2	309	32	17	14	35	1.90
9713028--9713307	84	3.3	83	81	4	303	32	18	15	33	1.92
9713346--9713462	52	2.3	51	86	5	164	34	11	11	41	1.79
9715350--9715398	14	3.5	14	80	0	62	32	0	2	65	1.04
9715474--9715509	3	12.3	3	94	5	65	30	0	0	69	0.89
9717306--9717348	22	2.0	22	90	0	68	23	23	9	44	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138