Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  43  of  138  ( 16447 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9420823--9420974
19
8.2
17
69
20
69
47
40
0
11
1.45
9420892--9420974
31
2.6
32
86
7
116
45
44
0
9
1.36
9431175--9431219
2
23.0
2
81
4
56
44
0
6
48
1.29
9433693--9433743
25
2.1
24
85
10
68
58
0
0
41
0.98
9433693--9433743
24
2.1
25
85
10
70
58
0
0
41
0.98
9433693--9433757
25
2.7
23
79
15
60
58
0
0
41
0.98
9438492--9438587
48
2.0
48
95
0
174
23
21
19
34
1.97
9439390--9439414
5
5.0
5
100
0
50
0
20
0
80
0.72
9439778--9439855
27
2.7
27
71
13
66
32
0
0
67
0.90
9441990--9442018
14
2.0
15
93
6
51
31
6
13
48
1.69
9447064--9447456
196
2.0
196
97
0
750
39
13
9
37
1.78
9449354--9449381
2
14.0
2
100
0
56
50
0
0
50
1.00
9449614--9449669
23
2.2
25
78
12
62
46
0
26
26
1.53
9450941--9450974
15
2.4
15
90
9
54
67
0
2
29
1.05
9451869--9451958
36
2.5
35
83
3
108
54
3
10
32
1.50
9451938--9452060
48
2.5
49
84
2
140
48
6
9
34
1.62
9454878--9455310
226
1.9
226
81
4
514
49
5
12
33
1.62
9454455--9456005
227
6.7
229
74
10
946
51
5
10
32
1.59
9456234--9456289
29
1.9
29
82
7
69
67
3
1
26
1.16
9457082--9457107
2
13.0
2
100
0
52
50
0
0
50
1.00
9458932--9459010
30
2.7
30
74
7
81
22
0
27
49
1.50
9458999--9459039
15
2.8
15
92
3
66
24
0
17
58
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9460545--9460577
3
11.0
3
100
0
66
33
0
0
66
0.92
9460790--9460848
22
2.6
22
81
7
66
32
16
20
30
1.95
9460946--9461107
88
1.8
88
86
0
234
41
16
19
22
1.90
9460946--9461126
88
2.1
88
84
2
229
40
16
19
23
1.91
9461216--9461258
22
2.0
22
95
0
77
27
20
25
25
1.99
9461027--9461346
110
2.9
109
84
2
372
40
17
19
21
1.91
9461397--9461582
88
2.1
87
83
6
232
40
19
19
20
1.92
9461700--9461808
41
2.7
41
85
5
141
33
14
17
33
1.90
9470153--9470192
17
2.4
17
86
0
53
40
0
7
52
1.30
9470067--9470435
59
6.3
58
87
5
501
34
11
8
45
1.70
9470067--9470598
57
8.7
59
80
12
558
35
12
7
45
1.69
9470404--9470454
19
2.8
18
91
5
68
41
3
13
41
1.63
9470414--9470454
19
2.2
19
100
0
82
39
4
14
41
1.67
9470363--9470514
79
1.9
79
92
2
254
36
11
7
44
1.71
9470298--9470571
136
2.0
135
90
4
428
36
12
7
43
1.71
9470239--9470588
194
1.8
194
93
2
614
36
13
7
43
1.71
9470623--9470693
5
13.4
5
77
14
63
80
2
4
12
0.97
9470631--9470694
6
10.7
6
76
17
53
81
1
4
12
0.92
9470613--9470693
11
7.4
11
78
13
71
79
2
4
13
1.01
9470636--9470682
17
2.9
17
81
6
53
82
2
4
10
0.88
9470626--9470677
26
2.0
25
88
3
77
82
3
3
9
0.91
9470717--9470766
4
12.8
4
87
4
75
76
4
0
20
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9471603--9471722
25
5.1
24
76
14
83
65
1
5
28
1.23
9471730--9471766
15
2.3
16
90
9
58
83
0
10
5
0.79
9471833--9471883
11
4.5
11
83
11
59
78
3
1
15
0.99
9471833--9471878
17
2.6
18
86
10
60
78
2
2
17
0.96
9472442--9472582
30
4.8
29
73
12
101
24
0
27
47
1.57
9472553--9472605
15
3.3
17
89
7
76
24
0
22
52
1.47
9472992--9473038
22
2.1
23
84
4
60
80
6
0
12
0.88
9474744--9475535
233
3.4
230
77
9
718
53
4
8
32
1.52
9475626--9475664
18
2.2
17
86
4
51
38
0
12
48
1.42
9476700--9477110
203
2.0
204
99
0
815
39
17
16
27
1.90
9479536--9479571
16
2.2
16
95
0
63
55
11
8
25
1.62
9480796--9480825
15
2.0
15
100
0
60
53
6
6
33
1.53
9480912--9481452
235
2.3
235
78
9
544
53
6
9
30
1.59
9485566--9485591
11
2.4
11
100
0
52
0
7
0
92
0.39
9487599--9487943
84
4.1
82
74
4
210
40
15
14
30
1.87
9487824--9488061
83
2.9
83
79
4
212
41
15
12
31
1.83
9488658--9488726
28
2.4
28
81
11
77
49
11
7
31
1.66
9490162--9490207
20
2.2
21
84
3
58
43
15
13
28
1.83
9490858--9490928
31
2.2
32
83
11
94
30
15
16
36
1.90
9491165--9491215
26
2.0
26
92
7
86
25
19
23
31
1.98
9491454--9491484
15
2.1
14
94
5
53
41
12
25
19
1.87
9491721--9491842
45
2.7
45
87
2
147
47
14
6
31
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9491750--9491842
21
4.1
23
73
12
77
47
15
5
32
1.68
9491770--9491842
21
3.3
21
74
10
83
47
16
2
32
1.61
9491652--9491934
127
2.2
126
83
6
340
46
14
6
31
1.71
9491861--9491963
23
4.6
22
75
9
84
49
10
6
33
1.64
9491869--9492147
45
6.1
44
74
11
122
48
10
6
33
1.64
9492016--9492170
45
3.5
44
81
5
179
47
10
7
34
1.68
9494304--9494337
12
3.0
11
87
8
50
2
2
8
85
0.80
9497375--9497399
13
1.9
13
100
0
50
16
0
8
76
1.02
9508243--9508280
15
2.6
15
91
4
60
39
15
2
42
1.61
9508945--9509016
26
2.8
25
75
12
65
50
0
1
48
1.09
9510115--9510146
3
10.7
3
100
0
64
31
0
0
68
0.90
9510194--9510227
18
1.9
17
88
5
50
11
5
2
79
1.02
9510257--9510342
19
4.5
18
77
13
66
62
2
1
33
1.15
9510258--9510342
38
2.2
38
81
10
93
63
2
1
32
1.15
9510284--9510333
23
2.2
23
85
3
66
70
4
0
26
1.05
9510648--9510688
20
2.0
21
86
13
59
51
0
0
48
1.00
9517145--9517196
21
2.5
20
82
11
61
76
7
0
15
0.99
9518606--9518728
30
3.9
31
81
6
151
47
30
2
20
1.63
9518595--9518722
16
8.1
16
72
10
93
46
28
2
22
1.64
9518603--9518742
30
4.6
30
76
7
122
46
29
2
22
1.63
9518687--9518800
51
2.2
49
80
13
124
50
30
0
18
1.47
9520569--9520594
8
3.2
8
100
0
52
88
11
0
0
0.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9526425--9526875
121
3.7
121
92
0
731
32
14
16
36
1.89
9526854--9526920
23
3.0
22
89
4
98
23
25
22
28
1.99
9526985--9527044
23
2.7
23
86
2
77
26
23
18
31
1.97
9526991--9527056
22
3.0
22
84
2
78
27
21
19
31
1.97
9526854--9527158
131
2.3
132
83
7
383
23
21
20
34
1.96
9527007--9527242
109
2.2
110
86
5
343
22
21
19
36
1.95
9527160--9527329
88
1.9
87
83
5
218
21
20
15
42
1.88
9527320--9527363
22
2.0
22
86
0
61
29
22
15
31
1.95
9527036--9528444
197
6.9
196
72
14
818
22
21
17
38
1.93
9527233--9528283
306
3.4
306
82
6
1170
22
21
17
38
1.93
9527434--9527757
109
3.0
109
81
3
382
22
21
17
38
1.93
9527661--9527831
87
2.0
87
82
4
211
21
21
16
39
1.92
9527933--9527976
22
2.0
22
86
0
61
27
20
18
34
1.96
9527736--9528267
110
4.9
110
87
3
700
22
22
18
37
1.94
9528043--9528086
22
2.0
22
82
8
54
27
27
18
27
1.98
9527434--9528781
526
2.6
517
82
6
1584
22
21
17
38
1.93
9528154--9528195
22
1.9
22
85
9
59
33
23
16
26
1.96
9528188--9528356
87
1.9
87
87
2
250
23
20
14
42
1.88
9528262--9528575
105
2.9
106
80
9
357
22
20
17
39
1.92
9528454--9528497
22
2.0
22
90
0
70
27
22
18
31
1.97
9528651--9528693
22
2.0
22
86
9
61
30
18
16
34
1.93
9528761--9528803
22
2.0
22
90
0
68
25
23
20
30
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9528563--9528879
110
2.9
110
80
3
368
22
20
18
38
1.93
9528949--9529015
22
3.0
23
82
6
84
25
19
22
32
1.97
9529209--9529250
6
6.8
6
87
12
59
85
2
0
11
0.68
9529208--9529250
7
6.6
7
86
7
56
86
2
0
11
0.67
9529959--9530119
16
10.4
16
73
12
122
47
33
1
17
1.56
9529960--9530103
30
4.7
32
78
10
140
47
31
1
19
1.58
9530053--9530161
51
2.1
51
83
6
141
48
35
0
15
1.45
9531289--9531857
288
2.0
290
92
4
970
32
12
14
40
1.83
9538449--9538482
5
7.0
5
86
6
52
20
0
0
79
0.73
9538288--9538585
130
2.3
132
80
9
319
30
6
7
54
1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138