genome.fa.s124.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  58  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12012125--12012172	20	2.4	20	96	0	87	18	27	20	33	1.96
12031877--12032859	364	2.7	363	82	3	1191	29	20	28	20	1.98
12036150--12036186	17	2.2	17	100	0	74	43	5	21	29	1.75
12048557--12048582	12	2.2	12	100	0	52	50	7	26	15	1.71
12098181--12098344	83	2.0	83	83	4	206	23	35	26	15	1.94
12101567--12101726	83	1.9	83	83	5	207	25	33	25	16	1.95
12115199--12115235	19	1.9	19	88	0	56	40	27	2	29	1.70
12117925--12118006	28	2.9	29	81	5	114	35	19	8	36	1.82
12119874--12119907	16	2.1	16	94	0	59	41	23	2	32	1.69
12124127--12124272	73	2.0	72	93	1	247	48	15	23	13	1.79
12141066--12141128	22	3.1	22	67	32	68	34	17	9	38	1.82
12141077--12141111	16	2.2	16	90	10	54	40	14	11	34	1.82
12143867--12143927	30	2.0	30	83	0	77	44	0	1	54	1.10
12143900--12143952	21	2.6	21	94	5	92	49	0	0	50	1.00
12151785--12151839	24	2.3	24	84	6	67	29	36	18	16	1.92
12173456--12173481	13	2.0	13	100	0	52	23	7	7	61	1.49
12185540--12185619	41	2.0	41	97	0	151	41	15	17	26	1.88
12204092--12204154	32	1.9	33	93	3	110	19	34	23	22	1.96
12216677--12216733	24	2.4	24	90	0	87	15	14	38	31	1.87
12232434--12232473	21	1.9	21	100	0	80	22	32	10	35	1.87
12235882--12235943	26	2.3	27	91	2	99	43	0	3	53	1.17
12236045--12236088	19	2.2	20	92	4	72	50	4	4	40	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12236252--12236307	27	2.1	26	81	15	62	44	1	3	50	1.29
12236278--12236320	17	2.5	18	81	7	54	51	2	2	44	1.27
12236675--12237158	176	2.7	180	78	7	534	42	8	7	40	1.65
12237420--12237492	31	2.4	27	74	25	67	45	2	1	50	1.24
12237475--12237508	16	2.1	17	88	5	52	41	2	2	52	1.31
12237527--12237577	16	3.1	16	76	21	52	52	0	1	45	1.12
12237549--12237601	22	2.4	22	84	9	63	47	3	0	49	1.19
12237736--12237774	14	2.7	14	88	4	51	41	0	0	58	0.98
12237741--12237774	7	4.9	7	85	0	50	35	0	0	64	0.94
12237765--12238335	181	3.2	177	80	7	579	42	9	8	39	1.68
12237964--12238789	457	1.8	457	83	5	1094	41	9	8	40	1.66
12238433--12238805	177	2.1	175	80	6	414	42	7	7	41	1.62
12238853--12238902	23	2.1	25	85	7	68	52	0	2	46	1.12
12238879--12238952	26	2.7	26	75	21	71	45	1	0	52	1.09
12238879--12238955	27	2.9	27	77	14	79	46	1	0	51	1.09
12239425--12239460	17	2.1	17	90	10	56	38	2	5	52	1.39
12240247--12240303	24	2.3	23	80	16	62	47	0	5	47	1.24
12240309--12240341	15	2.2	15	94	0	57	48	0	0	51	1.00
12240406--12240487	19	4.4	18	72	17	62	43	2	1	52	1.22
12240621--12240682	8	7.2	8	75	20	54	45	3	4	46	1.40
12240633--12240682	16	3.1	16	82	5	64	44	4	4	48	1.40
12240773--12240823	27	1.9	26	92	4	84	47	0	3	49	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12240868--12240928	18	3.1	19	73	20	54	44	0	0	55	0.99
12240900--12240993	12	7.4	12	67	23	50	50	0	1	48	1.07
12241180--12241223	9	5.0	9	86	5	54	47	0	0	52	1.00
12241369--12241398	13	2.3	13	94	0	51	36	3	6	53	1.44
12242331--12242364	13	2.8	12	91	8	52	44	8	0	47	1.34
12242651--12242695	23	2.0	23	86	8	65	46	2	4	46	1.35
12242674--12242729	27	2.1	26	80	9	60	51	3	5	39	1.42
12242709--12242746	19	2.0	20	84	5	51	65	2	0	31	1.06
12242901--12242944	20	2.2	20	84	4	54	47	9	2	40	1.48
12242987--12243033	16	3.1	17	82	17	59	48	4	0	46	1.21
12243019--12243090	29	2.5	30	80	12	80	48	1	0	50	1.09
12243068--12243104	11	3.3	11	88	7	56	59	0	0	40	0.97
12243077--12243116	18	2.3	17	79	8	53	57	0	0	42	0.98
12243393--12243483	20	4.3	19	75	21	67	51	0	2	46	1.13
12243390--12243455	4	16.2	4	74	14	55	51	0	1	46	1.10
12243395--12243493	24	4.3	24	71	23	72	51	0	2	46	1.12
12243780--12244277	180	2.8	177	78	6	493	40	9	8	41	1.67
12244684--12244714	10	3.0	10	95	4	53	41	0	0	58	0.98
12244685--12244728	21	2.0	22	86	4	63	45	0	2	52	1.13
12244700--12244737	16	2.4	17	82	13	53	50	0	2	47	1.15
12244856--12244899	23	1.9	22	82	17	54	43	2	6	47	1.42
12244885--12244939	25	2.1	26	83	10	67	49	1	0	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12245247--12245275	14	2.1	14	93	6	51	51	3	0	44	1.18
12245945--12246045	5	17.3	6	68	26	58	48	0	0	51	1.00
12245940--12246045	36	2.8	38	73	18	105	49	0	0	50	1.00
12245963--12246059	24	4.2	24	73	12	80	49	1	0	49	1.07
12245941--12246000	16	3.5	17	79	16	70	51	0	0	48	1.00
12246085--12246126	16	2.6	16	85	11	50	54	4	0	40	1.21
12246298--12246689	176	2.2	174	80	7	418	41	12	7	39	1.71
12246786--12246836	23	2.1	24	85	7	68	54	3	0	41	1.19
12247611--12247656	19	2.4	19	85	3	56	50	4	0	45	1.21
12247668--12247708	6	7.2	6	79	20	52	51	0	2	46	1.14
12247668--12247708	17	2.4	16	80	11	55	51	0	2	46	1.14
12247659--12247728	23	2.9	23	81	10	70	50	4	1	44	1.30
12248119--12248185	26	2.5	26	80	9	73	46	2	1	49	1.26
12248171--12248251	35	2.3	34	83	12	94	48	3	2	45	1.33
12249348--12249377	13	2.3	13	94	0	51	53	6	3	36	1.44
12249765--12249808	5	8.6	5	80	5	52	43	2	0	54	1.12
12249820--12249856	18	2.1	18	89	0	56	62	0	0	37	0.96
12249812--12249862	18	2.7	19	74	17	52	58	0	0	41	0.98
12249833--12249887	14	3.8	15	79	13	53	54	1	0	43	1.10
12249916--12249966	27	1.9	26	88	4	75	47	3	1	47	1.32
12250057--12250118	8	7.2	8	75	20	54	46	4	3	45	1.40
12250057--12250106	16	3.1	16	82	5	64	48	4	4	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12250278--12250323	18	2.4	19	79	17	51	52	2	2	43	1.25
12250377--12250430	15	3.7	15	76	13	60	55	0	0	44	0.99
12250400--12250473	20	3.5	20	75	20	64	47	1	0	51	1.09
12250580--12250617	14	2.7	14	76	15	51	36	0	0	63	0.95
12250693--12250732	15	2.6	15	88	4	53	50	0	0	50	1.00
12250721--12250771	23	2.2	24	80	16	63	47	0	1	50	1.12
12250678--12250753	13	5.3	15	72	17	54	48	0	1	50	1.09
12251828--12251890	23	2.6	23	78	16	65	49	1	1	47	1.20
12253139--12253191	22	2.4	22	84	9	63	49	0	3	47	1.19
12253161--12253207	22	2.1	22	84	7	60	44	2	0	53	1.12
12253163--12253207	15	2.9	15	81	12	56	44	2	0	53	1.13
12253231--12253264	16	2.1	17	88	5	52	52	2	2	41	1.31
12253247--12253319	31	2.4	27	74	25	67	50	1	2	45	1.24
12253305--12253376	38	1.9	36	81	10	83	45	0	1	52	1.09
12253586--12254063	176	2.7	179	77	7	502	41	7	7	42	1.63
12254275--12254329	18	3.3	17	80	10	60	47	0	5	47	1.25
12254296--12254333	18	2.2	17	90	4	58	50	0	5	44	1.24
12254419--12254461	17	2.5	18	81	7	54	44	2	2	51	1.27
12254564--12254605	22	1.9	22	85	0	57	42	2	2	52	1.27
12254663--12254706	20	2.3	19	88	4	61	40	2	4	52	1.34
12254722--12254757	15	2.5	14	86	4	54	44	0	2	52	1.15
12254803--12254864	26	2.3	27	91	2	99	53	3	0	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12275544--12275688	52	2.8	52	87	0	191	26	24	8	40	1.85
12275725--12275777	11	4.8	11	90	0	88	50	26	0	22	1.49
12285030--12285057	13	2.2	13	100	0	56	35	17	28	17	1.93
12285911--12285935	13	1.9	13	100	0	50	4	16	8	72	1.24
12295339--12295408	29	2.4	30	77	13	83	32	15	40	11	1.83
12295507--12295664	80	2.0	79	96	1	289	22	22	22	33	1.97
12309391--12309445	22	2.5	22	100	0	110	9	18	16	56	1.66
12311557--12311613	25	2.3	25	84	6	71	47	0	0	52	1.00
12317108--12317153	20	2.4	19	88	3	65	10	15	10	63	1.53
12317108--12317156	19	2.5	20	90	3	73	10	14	14	61	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138