genome.fa.s124.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  104  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15998388--15998439	26	2.0	26	88	0	77	26	17	26	28	1.97
15997521--15999072	708	2.2	707	86	1	2117	23	28	27	20	1.99
15998628--15999050	159	2.7	158	78	5	433	23	29	28	18	1.98
16000586--16000640	27	2.1	26	89	3	83	27	18	27	27	1.98
16001739--16001791	26	2.0	26	88	0	79	26	18	26	28	1.98
16002068--16002118	23	2.1	25	82	13	63	29	13	21	35	1.92
16002354--16002406	26	2.0	26	88	0	79	28	20	24	26	1.99
16002551--16002603	26	2.0	26	89	7	81	30	18	22	28	1.98
16002263--16002622	197	1.8	197	85	1	506	23	27	26	21	1.99
16003051--16003103	26	2.0	26	92	0	88	24	18	28	28	1.98
16003226--16004003	337	2.3	349	80	6	856	25	27	26	20	1.99
16003933--16003984	26	2.0	26	88	0	77	28	19	23	28	1.98
16004604--16004653	26	1.9	26	91	0	82	28	22	28	22	1.99
16004979--16005031	26	2.0	26	92	7	90	28	20	24	26	1.99
16005005--16005539	157	3.4	155	73	10	451	23	30	26	19	1.98
16005004--16005584	315	1.8	315	79	4	679	24	30	26	18	1.98
16005648--16005700	26	2.0	26	85	7	72	28	16	24	30	1.97
16006152--16006204	26	2.0	26	92	7	90	28	20	24	26	1.99
16006177--16006608	158	2.7	159	75	6	414	23	29	28	18	1.98
16006652--16006704	26	2.0	26	92	7	90	26	20	26	26	1.99
16006621--16006983	196	1.9	196	81	3	444	24	26	26	22	2.00
16007231--16007785	158	3.5	157	76	6	494	25	29	25	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16008414--16008484	26	2.7	26	97	0	133	33	15	21	29	1.94
16009226--16009276	25	2.0	26	88	3	77	27	15	29	27	1.96
16010268--16010319	26	2.0	26	92	0	86	25	17	28	28	1.97
16010476--16010528	26	2.0	26	86	13	74	30	16	22	30	1.96
16010501--16010962	159	2.9	157	79	6	447	22	27	28	21	1.99
16012026--16012078	26	2.0	26	89	7	81	28	18	24	28	1.98
16012211--16012263	26	2.0	26	88	0	79	24	16	28	30	1.97
16013241--16013293	26	2.0	26	89	7	81	24	20	26	28	1.99
16013459--16013496	20	1.9	20	88	0	58	31	15	26	26	1.96
16013945--16013997	26	2.0	26	81	0	61	28	20	24	26	1.99
16014816--16014865	26	1.9	26	88	8	75	30	20	26	24	1.98
16015022--16015073	26	2.0	26	92	3	88	28	19	23	28	1.98
16015522--16015574	26	2.0	26	92	0	88	24	15	28	32	1.95
16016235--16016287	26	2.0	26	89	7	81	28	18	26	26	1.98
16016578--16016630	26	2.0	26	88	0	79	28	20	24	26	1.99
16017275--16017327	26	2.0	26	92	7	90	26	20	28	24	1.99
16017471--16017523	26	2.0	26	89	7	81	26	22	24	26	2.00
16017496--16017961	159	2.9	158	78	7	408	21	30	28	18	1.97
16016270--16018060	696	2.6	695	83	3	2222	23	29	27	19	1.99
16017971--16018023	26	2.0	26	92	0	88	26	20	26	26	1.99
16018677--16018729	26	2.0	26	89	7	81	32	20	22	24	1.98
16019018--16019070	26	2.0	26	85	7	72	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16019228--16019280	26	2.0	26	92	0	88	28	20	22	28	1.99
16019566--16019618	26	2.0	26	88	0	79	26	18	26	28	1.98
16018676--16020058	547	2.5	545	82	4	1629	23	28	26	20	1.99
16019775--16019830	26	2.2	26	90	6	87	28	17	23	30	1.97
16019800--16020230	159	2.7	158	80	7	432	22	27	29	20	1.98
16020902--16020979	26	3.0	26	90	3	113	24	20	26	28	1.99
16020960--16021453	158	3.1	157	77	6	471	21	29	28	19	1.98
16021427--16021478	25	2.0	26	88	3	79	25	17	28	28	1.97
16021111--16021847	342	2.2	343	81	3	842	24	28	27	19	1.99
16022459--16022511	26	2.0	26	96	0	97	28	20	24	26	1.99
16022030--16022906	368	2.4	367	80	4	946	22	28	26	22	1.99
16022668--16023029	183	2.0	185	83	3	462	23	29	26	20	1.99
16024281--16024333	26	2.0	26	85	7	72	30	18	22	28	1.98
16024123--16024491	184	2.0	184	82	1	443	26	29	24	19	1.98
16023937--16024577	342	1.9	343	80	2	743	26	29	24	19	1.98
16024306--16024807	159	3.2	158	77	7	493	24	32	25	17	1.97
16024781--16024833	26	2.0	26	92	0	88	26	20	26	26	1.99
16026195--16026246	26	2.0	26	92	7	88	28	19	21	30	1.97
16026194--16027331	512	2.3	504	80	5	1262	24	28	26	19	1.99
16026727--16027164	159	2.8	157	76	7	438	23	31	27	16	1.96
16029299--16030508	611	2.0	611	94	0	2098	28	20	26	24	1.99
16034288--16034346	26	2.2	28	81	6	68	55	11	10	22	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16034546--16034598	26	2.0	26	92	0	88	28	28	18	24	1.98
16034743--16034795	26	2.0	26	85	0	70	26	22	20	30	1.98
16034506--16035271	197	3.9	196	80	3	817	21	26	28	24	1.99
16034941--16034994	26	2.1	26	96	0	99	25	29	20	24	1.99
16035138--16035190	26	2.0	26	96	0	97	30	28	16	24	1.97
16036496--16036871	157	2.4	158	78	7	386	19	26	29	24	1.98
16037052--16037103	26	2.0	26	85	7	70	30	26	15	26	1.96
16037179--16037574	157	2.5	156	77	6	404	19	27	28	24	1.98
16037550--16037602	26	2.0	26	89	7	81	28	22	18	30	1.98
16037845--16037895	26	2.0	26	88	7	77	33	23	13	29	1.93
16038021--16038418	158	2.5	159	75	8	380	18	27	31	22	1.97
16038883--16038936	26	2.1	26	93	6	92	24	25	22	27	2.00
16038451--16039122	347	1.9	346	84	2	900	19	28	27	23	1.99
16039387--16039439	26	2.0	26	92	7	90	30	22	16	30	1.96
16040143--16040510	196	1.9	196	82	3	463	19	27	29	23	1.98
16041263--16041315	26	2.0	26	92	0	88	26	26	20	26	1.99
16041598--16041648	26	1.9	27	92	4	86	23	21	25	29	1.99
16042327--16042379	26	2.0	26	89	7	81	26	24	20	28	1.99
16042861--16043239	159	2.4	158	75	6	372	21	26	29	22	1.99
16042287--16043414	501	2.2	502	81	2	1331	19	25	29	24	1.99
16043527--16043579	26	2.0	26	89	7	81	28	24	18	28	1.98
16044080--16044112	11	3.0	11	90	0	57	21	27	33	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16045033--16045085	26	2.0	26	88	0	79	30	28	16	24	1.97
16044660--16045402	343	2.2	343	85	1	981	20	28	27	23	1.99
16045059--16045552	158	3.1	158	76	6	464	21	27	27	23	1.99
16045534--16045586	26	2.0	26	89	7	81	28	26	18	26	1.98
16046586--16046638	26	2.0	26	96	0	97	26	28	20	24	1.99
16046214--16046942	330	2.2	339	81	3	841	19	27	28	24	1.98
16054122--16054174	26	2.0	26	88	0	79	28	26	18	26	1.98
16054184--16054515	170	2.0	169	80	4	382	19	28	30	21	1.98
16054488--16054540	26	2.0	26	89	7	81	28	26	18	26	1.98
16055095--16055147	26	2.0	26	85	0	70	28	30	16	24	1.97
16055565--16055617	26	2.0	26	92	0	88	24	24	20	30	1.99
16056429--16056481	26	2.0	26	89	7	81	28	24	18	28	1.98
16057119--16057171	26	2.0	26	92	0	88	28	28	18	24	1.98
16058916--16058968	26	2.0	26	85	7	72	32	18	20	28	1.97
16058417--16059503	513	2.1	508	79	6	1134	24	28	26	20	1.99
16060136--16060955	159	5.2	158	74	8	565	23	28	27	20	1.99
16060160--16060949	317	2.5	318	80	4	855	22	29	28	20	1.98
16062010--16062062	26	2.0	26	89	7	81	28	18	24	28	1.98
16062499--16062551	26	2.0	26	88	0	79	22	22	26	28	1.99
16068226--16068722	159	3.1	157	77	6	491	23	29	26	19	1.98
16068695--16068747	26	2.0	26	92	0	88	26	20	26	26	1.99
16069980--16070032	26	2.0	26	85	0	70	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16069694--16070063	197	1.9	197	83	0	488	27	27	23	22	1.99
16070714--16070766	26	2.0	26	85	7	72	30	18	24	26	1.98
16070739--16071041	158	1.9	158	85	1	419	22	29	28	19	1.98
16070739--16071082	158	2.2	158	82	2	404	22	28	28	20	1.98
16071056--16071108	26	2.0	26	92	0	88	24	18	28	28	1.98
16077762--16077813	26	2.0	26	88	0	77	23	21	30	25	1.99
16077729--16078113	196	2.0	196	84	2	513	20	28	28	22	1.99
16077982--16078370	158	2.5	158	80	4	417	24	30	26	17	1.97
16077982--16078404	159	2.7	158	78	6	426	24	30	27	17	1.97
16078496--16078851	171	2.1	171	81	6	411	23	28	26	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138