genome.fa.s124.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  125  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17724466--17724518	26	2.0	26	96	0	97	26	18	26	28	1.98
17725526--17725576	26	2.0	26	96	0	93	31	17	21	29	1.96
17725519--17725844	179	1.8	180	84	3	451	23	24	27	23	2.00
17734728--17734778	26	2.0	26	100	0	102	27	19	25	27	1.99
17735792--17735842	26	2.0	26	88	0	75	29	15	23	31	1.95
17735606--17735945	180	1.9	180	81	1	412	24	23	27	24	2.00
17736701--17736753	26	2.0	26	100	0	106	26	20	26	26	1.99
17736864--17736921	26	2.3	26	85	5	84	25	20	22	31	1.98
17736698--17737018	170	1.9	170	90	0	507	24	26	27	21	1.99
17738763--17739154	153	2.5	155	82	3	466	23	28	27	20	1.99
17739974--17740058	27	3.1	27	96	1	152	43	23	8	24	1.81
17740909--17741195	153	1.9	153	85	0	403	22	28	28	20	1.99
17742215--17742265	26	2.0	26	96	0	93	29	25	17	27	1.98
17742384--17742435	27	1.9	27	96	0	95	26	23	21	28	1.99
17742052--17742463	179	2.3	180	83	3	497	23	25	26	24	2.00
17744340--17744668	179	1.8	179	82	1	426	24	23	27	24	2.00
17744962--17745014	26	2.0	26	85	0	70	26	18	24	30	1.98
17745141--17745191	26	2.0	26	88	0	75	31	15	23	29	1.95
17744087--17745300	618	2.0	617	83	2	1533	24	26	25	22	2.00
17744956--17745351	179	2.2	183	80	7	441	24	24	26	24	2.00
17745962--17746012	26	2.0	26	96	0	93	29	19	23	27	1.98
17745988--17746276	153	1.9	153	82	1	364	23	28	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17747893--17747945	26	2.0	26	92	0	88	26	18	24	30	1.98
17747885--17748282	178	2.2	181	85	4	543	22	25	28	23	1.99
17749550--17750302	337	2.2	338	83	1	945	24	26	26	22	2.00
17750965--17751017	26	2.0	26	96	0	97	26	20	24	28	1.99
17751143--17751193	26	2.0	26	92	0	84	29	17	23	29	1.97
17752037--17752087	26	2.0	26	96	0	93	29	17	25	27	1.98
17752926--17752978	26	2.0	26	92	0	88	30	20	22	26	1.98
17751140--17755733	887	5.2	881	82	7	5068	25	23	24	26	2.00
17755707--17755757	26	2.0	26	96	0	93	29	19	23	27	1.98
17757824--17757874	26	2.0	26	92	0	84	29	17	23	29	1.97
17759968--17760020	26	2.0	26	92	0	88	26	20	24	28	1.99
17759964--17760450	179	2.7	179	85	0	625	24	26	28	20	1.99
17761451--17761503	26	2.0	26	92	0	88	28	18	26	26	1.98
17761630--17761680	26	2.0	26	96	0	93	33	19	21	25	1.97
17761448--17761792	179	1.9	179	83	0	447	24	25	28	21	1.99
17762528--17762580	26	2.0	26	92	0	88	26	22	24	26	2.00
17762707--17762757	26	2.0	26	92	0	84	29	17	23	29	1.97
17763433--17763603	84	2.0	84	87	4	247	23	38	25	13	1.91
17765601--17765656	24	2.3	25	79	14	64	25	35	19	19	1.95
17769587--17769638	26	2.0	26	88	3	79	26	17	25	30	1.97
17769584--17769923	178	1.9	178	85	1	475	24	27	26	21	2.00
17771511--17771856	179	1.9	179	85	2	480	23	27	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17772594--17772646	26	2.0	26	96	0	97	28	20	24	26	1.99
17773465--17773517	26	2.0	26	92	0	88	28	18	24	28	1.98
17771693--17774147	871	2.8	868	88	3	3538	26	22	23	27	2.00
17774478--17774527	26	1.9	26	100	0	100	28	18	26	28	1.98
17777052--17777104	26	2.0	26	88	0	79	30	18	22	28	1.98
17777231--17777281	26	2.0	26	88	0	75	29	19	23	27	1.98
17777033--17777371	179	1.9	179	85	3	477	25	27	26	21	1.99
17778307--17778356	26	1.9	26	100	0	100	28	18	26	28	1.98
17778111--17778517	179	2.2	182	85	3	543	22	27	27	21	1.99
17781063--17781342	147	1.9	146	80	3	330	23	26	29	21	1.99
17784739--17784788	26	1.9	26	95	0	91	30	18	22	30	1.97
17785635--17785686	26	2.0	26	88	0	77	26	17	25	30	1.97
17785814--17785864	26	2.0	26	96	0	93	33	19	19	27	1.96
17785616--17785977	179	2.0	179	86	0	499	23	27	27	22	1.99
17786691--17786746	26	2.1	27	93	3	96	28	19	23	28	1.98
17786691--17787022	179	1.9	179	87	2	488	24	25	28	21	1.99
17788810--17788862	26	2.0	26	92	0	88	28	18	24	28	1.98
17788808--17789136	178	1.8	179	90	3	529	23	27	29	19	1.98
17790068--17790120	26	2.0	26	85	0	70	32	18	24	24	1.97
17790246--17790296	26	2.0	26	92	0	84	25	17	25	31	1.97
17791126--17791176	26	2.0	26	100	0	102	27	19	25	27	1.99
17791760--17791832	26	2.8	26	86	12	105	24	15	27	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17792680--17792732	26	2.0	26	88	0	79	26	18	24	30	1.98
17792859--17792909	26	2.0	26	88	0	75	27	17	25	29	1.98
17792661--17793070	179	2.3	179	81	5	464	23	27	26	21	1.99
17793756--17793808	26	2.0	26	92	0	88	28	20	22	28	1.99
17793935--17793985	26	2.0	26	92	0	84	27	19	25	27	1.99
17794689--17794739	26	2.0	26	92	0	84	29	13	23	33	1.93
17794715--17795200	153	3.1	153	78	5	517	23	27	28	20	1.99
17796075--17796127	26	2.0	26	92	0	88	28	20	20	30	1.98
17796254--17796304	26	2.0	26	92	0	84	29	17	25	27	1.98
17796072--17796416	179	1.9	179	82	2	424	23	25	28	22	1.99
17797151--17797203	26	2.0	26	100	0	106	26	16	26	30	1.97
17798222--17798272	26	2.0	26	92	0	84	29	17	23	29	1.97
17797324--17799280	898	2.2	888	87	2	2801	26	24	23	26	2.00
17799118--17799170	26	2.0	26	96	0	97	26	20	24	28	1.99
17801041--17801091	26	2.0	26	96	0	93	29	13	29	27	1.94
17800887--17801738	179	4.8	179	82	2	1001	23	25	28	22	1.99
17801219--17801269	26	2.0	26	100	0	102	27	19	25	27	1.99
17801399--17801451	26	2.0	26	92	0	88	30	16	24	28	1.97
17800887--17801754	359	2.4	357	85	1	1121	23	26	28	22	1.99
17801578--17801628	26	2.0	26	88	0	75	31	13	21	33	1.92
17802472--17802524	26	2.0	26	92	0	88	28	18	24	28	1.98
17803537--17803589	26	2.0	26	88	0	79	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17803716--17803766	26	2.0	26	96	0	93	31	17	23	27	1.97
17805653--17805705	26	2.0	26	92	0	88	28	22	22	26	1.99
17805826--17805876	26	2.0	26	96	0	93	27	17	25	29	1.98
17806722--17806774	26	2.0	26	92	0	88	33	18	20	26	1.96
17807782--17807834	26	2.0	26	92	0	88	30	20	22	26	1.98
17807961--17808011	26	2.0	26	92	7	86	29	17	25	27	1.98
17807779--17808115	179	1.9	179	88	1	505	24	27	28	19	1.98
17809659--17809711	26	2.0	26	88	0	79	28	20	26	24	1.99
17809640--17809986	179	1.9	179	85	1	480	21	25	29	23	1.99
17812820--17812872	26	2.0	26	88	0	79	28	16	26	28	1.97
17812999--17813049	26	2.0	26	88	0	75	29	15	23	31	1.95
17812818--17813146	179	1.8	179	84	2	446	24	25	27	22	2.00
17813897--17813947	26	2.0	26	100	0	102	27	19	27	25	1.99
17815053--17815420	151	2.4	151	85	5	488	22	26	29	20	1.99
17816075--17816127	26	2.0	26	92	0	88	24	18	26	30	1.98
17817149--17817199	26	2.0	26	88	0	75	29	15	23	31	1.95
17818042--17818094	26	2.0	26	100	0	106	30	20	22	26	1.98
17818068--17818425	152	2.3	152	83	4	448	24	30	26	18	1.98
17819092--17819144	26	2.0	26	92	0	88	26	20	24	28	1.99
17824039--17824084	20	2.3	20	100	0	92	8	28	32	30	1.87
17826740--17826790	26	2.0	26	88	0	75	31	17	21	29	1.96
17826587--17826950	179	2.0	181	84	3	471	23	27	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17827637--17827689	26	2.0	26	92	0	88	26	20	24	28	1.99
17827663--17828024	152	2.3	152	84	3	472	23	28	28	19	1.98
17828682--17828734	26	2.0	26	100	0	106	26	20	26	26	1.99
17829573--17829625	26	2.0	26	92	0	88	26	20	24	28	1.99
17827815--17829778	891	2.2	886	85	3	2654	24	23	25	26	2.00
17829752--17829802	26	2.0	26	96	0	93	27	17	25	29	1.98
17830650--17830702	26	2.0	26	88	0	79	28	18	22	30	1.98
17833661--17833732	26	2.8	26	100	0	144	30	16	23	29	1.96
17833869--17833918	25	2.0	26	88	4	75	30	14	26	30	1.94
17833687--17834201	178	2.9	177	80	3	575	24	27	26	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138