genome.fa.s124.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  108  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16295729--16296310	300	1.9	300	84	2	774	19	24	31	24	1.98
16296358--16296410	26	2.0	26	86	13	74	32	24	15	28	1.95
16296274--16297775	343	4.4	340	76	9	1121	19	26	29	24	1.98
16296812--16297401	159	3.7	158	76	5	537	18	27	30	23	1.98
16296739--16297400	318	2.1	317	84	2	864	18	26	30	23	1.98
16297374--16297426	26	2.0	26	88	0	79	28	24	20	26	1.99
16297397--16297742	158	2.2	158	81	2	381	19	26	29	24	1.99
16298062--16298114	26	2.0	26	85	7	72	26	22	20	30	1.98
16298368--16298420	26	2.0	26	92	7	90	26	22	20	30	1.98
16300033--16300451	159	2.6	158	77	5	423	19	29	28	23	1.98
16300424--16300476	26	2.0	26	85	7	72	28	22	18	30	1.98
16301000--16301049	26	1.9	26	95	0	91	28	30	16	26	1.96
16301048--16301430	159	2.4	158	76	8	375	21	26	27	24	1.99
16301402--16301480	26	3.0	26	94	3	133	27	24	18	29	1.98
16302828--16302880	26	2.0	26	89	7	81	28	26	16	28	1.97
16302854--16303677	159	5.2	160	72	10	566	20	26	28	23	1.99
16302854--16303679	319	2.6	317	78	7	902	20	26	28	23	1.99
16303651--16303702	26	2.0	26	88	7	79	26	23	19	30	1.98
16307182--16307232	26	2.0	26	92	0	84	29	29	15	25	1.96
16308215--16308499	156	1.8	156	84	3	394	20	26	28	24	1.99
16308473--16308525	26	2.0	26	92	7	90	30	24	16	28	1.97
16308680--16308732	26	2.0	26	96	0	97	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16309537--16309604	25	2.7	26	95	4	129	26	23	19	30	1.98
16310306--16310358	26	2.0	26	88	0	79	28	26	18	26	1.98
16309563--16310518	375	2.6	369	82	4	1036	20	25	29	24	1.99
16310813--16310865	26	2.0	26	89	7	81	28	26	18	26	1.98
16311008--16311060	26	2.0	26	85	7	72	26	20	20	32	1.98
16315187--16315239	26	2.0	26	85	7	72	30	24	16	28	1.97
16315739--16315791	26	2.0	26	85	7	72	30	26	16	26	1.97
16315850--16316068	119	1.8	118	82	2	278	16	34	23	25	1.95
16316041--16316116	26	2.9	26	84	0	98	26	30	18	25	1.98
16316220--16316912	158	4.4	160	75	7	604	18	25	30	25	1.98
16316103--16316911	317	2.6	317	82	3	939	18	26	30	24	1.98
16316884--16316936	26	2.0	26	89	7	81	24	24	22	28	2.00
16318290--16318342	26	2.0	26	92	7	90	26	24	20	28	1.99
16319670--16319722	26	2.0	26	92	0	88	28	28	18	24	1.98
16319696--16320197	158	3.2	158	74	6	460	20	26	28	24	1.99
16326923--16326975	26	2.0	26	96	0	97	30	28	16	24	1.97
16327426--16327478	26	2.0	26	85	0	70	24	24	18	32	1.97
16328148--16328200	26	2.0	26	89	7	81	30	24	16	28	1.97
16328661--16328703	23	1.9	22	90	4	68	23	23	18	34	1.96
16331314--16331365	25	2.0	26	92	3	88	25	26	23	25	2.00
16332511--16332563	26	2.0	26	85	7	72	28	26	18	26	1.98
16334369--16334419	26	2.0	26	92	0	84	31	29	13	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16334395--16334916	159	3.3	159	76	1	519	21	25	28	24	1.99
16335212--16335263	25	2.0	26	92	3	88	26	28	19	25	1.98
16336221--16336273	26	2.0	26	96	0	97	26	28	20	24	1.99
16337004--16337056	26	2.0	26	89	7	81	26	26	20	26	1.99
16337524--16337900	159	2.4	159	78	4	393	19	26	29	24	1.98
16337872--16337949	26	3.0	26	92	3	131	28	21	19	30	1.97
16338646--16339145	158	3.2	157	76	7	503	20	27	29	23	1.98
16339119--16339171	26	2.0	26	86	13	74	28	22	20	28	1.99
16339500--16339552	26	2.0	26	85	0	70	30	26	20	22	1.98
16339532--16339901	159	2.3	158	76	6	381	20	26	30	22	1.99
16340001--16340053	26	2.0	26	85	7	72	28	24	20	26	1.99
16346645--16347145	159	3.2	157	78	6	440	19	26	29	24	1.98
16347501--16347551	26	2.0	26	92	0	84	29	25	17	27	1.98
16347840--16347892	26	2.0	26	88	0	79	28	24	20	26	1.99
16347467--16348208	341	2.2	340	83	4	904	19	27	29	24	1.98
16347901--16348186	158	1.8	158	83	4	380	16	26	33	23	1.96
16347901--16348251	158	2.2	158	80	5	379	18	25	32	23	1.97
16348555--16348631	26	3.0	26	90	7	129	27	24	18	29	1.98
16348605--16349740	158	7.2	158	75	4	885	19	26	30	23	1.98
16348605--16349740	316	3.6	318	83	3	1371	19	26	30	23	1.98
16349713--16349765	26	2.0	26	85	7	72	24	22	22	30	1.99
16349926--16349976	26	2.0	26	96	0	93	27	27	19	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16349950--16351083	158	7.2	158	75	5	959	19	28	29	22	1.98
16349950--16351084	316	3.6	315	84	2	1425	19	28	29	22	1.98
16351057--16351109	26	2.0	26	85	7	72	28	22	20	28	1.99
16351755--16351805	26	2.0	26	92	0	84	33	27	13	25	1.94
16352631--16353118	158	3.1	156	73	7	441	19	27	30	22	1.98
16354787--16354839	26	2.0	26	85	7	72	26	24	22	26	2.00
16354814--16355220	159	2.6	157	78	6	433	20	26	30	22	1.98
16355287--16355339	26	2.0	26	85	7	72	28	22	18	30	1.98
16355131--16355498	183	2.0	183	82	1	441	22	25	26	25	2.00
16355934--16356151	117	1.9	117	81	1	267	20	29	21	28	1.98
16356287--16356337	26	2.0	26	88	7	77	25	29	15	29	1.96
16356346--16356650	159	1.9	158	80	2	351	18	26	31	23	1.98
16357280--16357611	156	2.1	157	82	2	389	20	25	29	24	1.99
16357594--16357646	26	2.0	26	89	7	81	28	24	18	28	1.98
16357801--16357855	27	2.1	26	86	10	76	32	23	16	27	1.96
16358259--16358567	159	1.9	159	79	3	336	22	25	27	24	2.00
16358658--16358710	26	2.0	26	92	0	88	28	20	20	30	1.98
16359025--16359076	25	2.0	26	88	3	79	28	25	19	26	1.98
16358637--16359611	366	2.7	363	85	3	1220	20	25	29	24	1.99
16359391--16359443	26	2.0	26	85	0	70	28	26	20	24	1.99
16359916--16359968	26	2.0	26	85	7	72	28	24	18	28	1.98
16360112--16360164	26	2.0	26	85	7	72	26	18	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16366208--16366286	26	3.0	26	83	0	104	26	29	20	24	1.99
16366324--16367077	159	4.8	159	74	7	543	18	27	30	24	1.98
16366270--16367077	317	2.5	316	84	3	1009	18	26	30	24	1.98
16367046--16367104	26	2.3	26	82	5	75	23	27	23	25	2.00
16367182--16367206	11	2.3	11	100	0	50	20	24	40	16	1.91
16368195--16368484	159	1.8	160	79	5	345	18	28	28	24	1.98
16369218--16369545	158	2.1	159	82	4	394	21	26	28	22	1.99
16369840--16369892	26	2.0	26	88	0	79	30	28	16	24	1.97
16370338--16370390	26	2.0	26	89	7	81	28	24	18	28	1.98
16377053--16377105	26	2.0	26	92	0	88	30	30	15	24	1.95
16377112--16377411	159	1.9	158	82	2	377	17	28	31	23	1.96
16378363--16378805	159	2.8	158	81	3	514	17	29	30	22	1.97
16378302--16378803	158	3.2	158	79	3	553	18	27	30	23	1.98
16378777--16378829	26	2.0	26	92	0	88	26	26	18	28	1.98
16379662--16380024	158	2.3	157	80	3	415	20	27	29	23	1.99
16379997--16380049	26	2.0	26	89	7	81	28	24	18	28	1.98
16380773--16381269	159	3.1	156	78	7	504	18	26	31	23	1.97
16381241--16381293	26	2.0	26	89	7	81	26	22	20	30	1.98
16382034--16382086	26	2.0	26	92	7	90	26	24	20	28	1.99
16382243--16382295	26	2.0	26	92	0	88	30	26	18	24	1.98
16383439--16383491	26	2.0	26	92	0	88	24	26	20	28	1.99
16383613--16384493	448	2.0	448	90	0	1406	31	19	20	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16384793--16384845	26	2.0	26	89	7	81	26	22	20	30	1.98
16385487--16385539	26	2.0	26	89	7	81	26	26	18	28	1.98
16385698--16386188	157	3.1	156	76	6	479	19	28	30	21	1.98
16386171--16386223	26	2.0	26	85	7	72	30	20	18	30	1.97
16387414--16387776	159	2.3	159	79	5	380	21	24	28	25	1.99
16387593--16388004	183	2.2	182	82	2	502	21	26	28	24	1.99
16388145--16388196	26	2.0	26	88	7	79	30	28	17	23	1.97
16388488--16388540	26	2.0	26	89	7	81	26	22	20	30	1.98
16389207--16389259	26	2.0	26	85	0	70	28	24	18	28	1.98
16389391--16389443	26	2.0	26	89	7	81	26	20	22	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138