genome.fa.s124.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  70  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13333998--13334048	26	2.0	26	88	7	77	27	25	13	33	1.94
13334172--13334223	26	2.0	26	88	7	79	26	23	19	30	1.98
13333921--13334370	171	2.6	175	83	4	520	20	26	26	26	1.99
13334260--13334688	159	2.7	159	75	8	424	18	28	27	24	1.98
13335371--13335423	26	2.0	26	85	7	72	24	26	20	28	1.99
13334256--13335863	711	2.3	709	82	3	1946	20	27	28	23	1.99
13336045--13336070	11	2.4	11	100	0	52	26	23	34	15	1.94
13336651--13336701	26	2.0	26	92	0	84	29	25	17	27	1.98
13338565--13338617	26	2.0	26	89	7	81	28	20	18	32	1.97
13338761--13338813	26	2.0	26	88	0	79	28	22	20	28	1.99
13339263--13339315	26	2.0	26	89	7	81	32	22	15	30	1.94
13339580--13339631	26	2.0	26	88	0	77	26	25	19	28	1.98
13339104--13340019	502	1.8	503	83	2	1214	21	26	28	23	1.99
13339765--13339817	26	2.0	26	89	7	81	28	24	18	28	1.98
13339897--13340463	159	3.6	157	75	5	460	17	26	31	24	1.97
13340817--13340869	26	2.0	26	96	0	97	26	28	20	24	1.99
13340843--13341344	158	3.2	158	75	7	399	20	26	29	23	1.99
13341160--13341980	352	2.3	352	85	2	1110	20	26	29	23	1.99
13341841--13341893	26	2.0	26	96	0	97	26	28	20	24	1.99
13342257--13342307	26	2.0	26	92	0	84	29	27	17	25	1.98
13342952--13343004	26	2.0	26	100	0	106	26	26	20	26	1.99
13343306--13343358	26	2.0	26	85	0	70	28	26	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13345033--13345085	26	2.0	26	92	0	88	28	28	18	24	1.98
13345703--13345755	26	2.0	26	92	0	88	28	28	18	24	1.98
13345729--13346117	158	2.5	159	74	9	382	22	27	30	20	1.98
13346673--13347110	158	2.8	159	77	5	411	19	27	30	23	1.98
13347545--13347605	26	2.3	26	80	2	68	57	8	8	26	1.56
13347804--13347856	26	2.0	26	88	0	79	28	24	20	26	1.99
13347830--13348160	158	2.1	157	81	1	385	21	27	27	23	1.99
13348356--13348406	26	2.0	26	88	7	77	35	23	13	27	1.93
13348696--13348748	26	2.0	26	92	7	90	26	24	20	28	1.99
13348998--13349041	22	2.0	22	100	0	88	18	4	27	50	1.66
13349445--13349497	26	2.0	26	89	7	81	30	24	16	28	1.97
13349504--13349970	159	3.0	158	78	5	451	18	27	30	23	1.98
13349945--13349997	26	2.0	26	89	7	81	28	24	18	28	1.98
13350116--13350168	26	2.0	26	92	0	88	28	26	20	24	1.99
13349358--13350643	671	1.9	671	84	3	1694	19	27	28	24	1.99
13350144--13351452	159	8.2	158	71	10	676	18	26	30	24	1.98
13350150--13350961	318	2.6	317	80	4	807	19	26	30	24	1.98
13350934--13350986	26	2.0	26	89	7	81	24	24	20	30	1.99
13350547--13351477	491	1.9	488	86	2	1346	18	26	29	25	1.98
13351012--13351452	158	2.8	156	78	6	456	18	26	30	24	1.98
13352611--13352660	26	1.9	26	87	0	73	26	28	18	28	1.98
13358639--13358691	26	2.0	26	88	0	79	30	24	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13359022--13359074	26	2.0	26	96	0	97	26	28	20	24	1.99
13359365--13359417	26	2.0	26	89	7	81	28	24	18	28	1.98
13360071--13360123	26	2.0	26	88	0	79	30	28	16	24	1.97
13360805--13361305	159	3.2	157	74	8	408	19	26	29	23	1.99
13361277--13361329	26	2.0	26	89	7	81	26	22	20	30	1.98
13360048--13361697	706	2.3	706	86	1	2257	20	26	28	24	1.99
13361486--13361538	26	2.0	26	92	0	88	26	28	18	26	1.98
13361435--13362089	184	3.4	181	71	13	515	20	28	27	23	1.99
13361120--13362089	393	2.5	393	85	3	1285	21	28	27	23	1.99
13361881--13361931	25	2.0	26	92	3	86	29	27	17	25	1.98
13361961--13362258	158	1.9	157	83	3	393	17	29	30	23	1.97
13362401--13362454	26	2.1	26	92	0	90	25	24	20	29	1.99
13363115--13363167	26	2.0	26	85	7	72	30	30	15	24	1.95
13363715--13364072	170	2.2	164	78	9	367	21	27	28	23	1.99
13364550--13364602	26	2.0	26	89	7	81	26	22	20	30	1.98
13365273--13365325	26	2.0	26	92	0	88	28	28	18	24	1.98
13365416--13365802	159	2.4	159	80	1	443	19	27	29	23	1.98
13365616--13365985	183	2.0	185	85	2	503	21	25	28	24	1.99
13366107--13366960	316	2.7	314	81	5	977	19	26	29	24	1.99
13366105--13366959	159	5.4	157	76	8	714	19	26	29	24	1.99
13368221--13368273	26	2.0	26	88	0	79	30	28	16	24	1.97
13368563--13368615	26	2.0	26	88	0	79	32	26	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13367913--13368641	342	2.1	338	86	4	980	22	27	27	22	1.99
13369884--13370259	167	2.3	167	98	0	725	16	29	32	21	1.95
13370673--13370725	26	2.0	26	85	0	70	28	24	18	28	1.98
13371638--13371689	26	2.0	26	88	0	77	28	26	17	26	1.97
13373844--13373895	25	2.0	26	92	3	88	28	26	19	25	1.98
13373932--13374221	159	1.8	159	80	5	345	17	26	30	24	1.97
13375154--13375206	26	2.0	26	88	0	79	28	26	18	26	1.98
13376221--13376273	26	2.0	26	85	0	70	26	26	18	28	1.98
13376923--13376975	26	2.0	26	92	7	90	26	24	20	28	1.99
13377302--13377354	26	2.0	26	86	13	74	30	26	16	26	1.97
13378805--13378857	26	2.0	26	85	0	70	26	18	26	28	1.98
13379199--13379251	26	2.0	26	92	0	88	24	18	28	28	1.98
13378801--13379617	392	2.1	394	81	4	925	24	26	25	22	2.00
13379430--13379882	159	2.9	158	75	6	407	24	29	25	19	1.98
13380074--13380104	12	2.6	12	100	0	62	0	29	29	41	1.56
13379039--13381369	719	3.3	706	77	7	1889	24	28	25	21	1.99
13381300--13381351	26	2.0	26	88	0	77	30	19	21	28	1.97
13382215--13382267	26	2.0	26	92	0	88	22	20	30	26	1.98
13388511--13388563	26	2.0	26	92	0	88	24	18	28	28	1.98
13388536--13389356	159	5.2	158	78	3	745	22	30	28	18	1.97
13388537--13389323	317	2.5	316	79	3	744	22	31	28	18	1.97
13389710--13389762	26	2.0	26	92	7	90	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13390211--13390263	26	2.0	26	85	7	72	26	16	26	30	1.97
13396902--13397098	104	1.9	106	79	2	227	23	29	29	16	1.97
13397645--13398177	158	3.4	157	81	5	619	22	32	26	18	1.97
13398874--13398926	26	2.0	26	89	7	81	28	18	24	28	1.98
13399472--13399524	26	2.0	26	85	0	70	22	16	30	30	1.96
13401171--13401553	157	2.4	157	74	5	364	24	28	24	22	1.99
13401527--13401579	26	2.0	26	88	0	79	26	18	26	28	1.98
13401704--13402146	159	2.8	157	78	6	479	24	29	27	18	1.98
13402852--13403275	160	2.7	159	77	6	446	22	30	27	19	1.98
13403255--13403307	26	2.0	26	92	0	88	24	18	28	28	1.98
13404504--13404556	26	2.0	26	89	7	81	26	18	26	28	1.98
13405009--13405061	26	2.0	26	92	0	88	24	18	26	30	1.98
13406031--13406750	355	2.0	356	80	7	819	23	29	26	20	1.99
13406261--13406584	171	1.9	170	83	1	416	23	31	27	18	1.97
13407290--13407342	26	2.0	26	85	7	72	30	16	24	28	1.97
13407772--13407824	26	2.0	26	88	0	79	24	20	28	26	1.99
13406424--13407896	678	2.1	686	81	4	1688	23	28	27	20	1.99
13408455--13408507	26	2.0	26	92	7	90	30	20	22	26	1.98
13410192--13410244	26	2.0	26	85	0	70	24	18	28	28	1.98
13410574--13410623	26	1.9	26	92	8	84	30	14	22	34	1.93
13415090--13415142	26	2.0	26	85	7	72	30	18	22	28	1.98
13415735--13416236	158	3.2	156	77	7	521	21	31	27	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13417311--13417363	26	2.0	25	85	7	70	28	18	24	28	1.98
13417468--13417546	26	3.0	26	85	3	106	27	18	24	29	1.98
13417530--13418153	157	4.1	152	77	11	593	22	29	28	19	1.98
13418128--13418178	25	2.0	25	96	0	93	25	17	29	27	1.98
13424764--13424819	26	2.2	26	93	6	96	28	19	23	28	1.98
13425645--13425697	26	2.0	26	92	7	90	28	20	24	26	1.99
13426146--13426198	26	2.0	26	88	0	79	26	16	28	28	1.97
13425436--13427006	501	3.2	495	76	9	1368	23	27	26	21	1.99
13426643--13427462	159	5.2	160	74	6	578	23	29	26	20	1.98
13426731--13427462	316	2.3	317	82	2	844	22	31	26	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138