genome.fa.s124.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  86  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14561098--14561149	26	2.0	26	88	0	77	26	19	25	28	1.98
14563760--14563811	26	2.0	25	92	3	86	30	21	21	26	1.98
14564260--14564312	26	2.0	26	92	0	88	24	18	28	28	1.98
14565386--14565435	26	1.9	26	92	8	84	32	18	22	28	1.97
14565411--14565986	159	3.6	157	79	4	593	23	30	28	18	1.97
14566572--14566624	26	2.0	26	92	7	90	26	20	26	26	1.99
14566597--14567099	158	3.2	156	75	8	401	22	29	27	20	1.98
14567073--14567125	26	2.0	26	88	0	79	24	18	26	30	1.98
14567478--14567537	26	2.3	26	94	0	111	25	18	28	28	1.98
14567478--14567544	26	2.6	26	86	9	100	23	17	28	29	1.97
14568215--14568267	26	2.0	26	85	7	72	28	22	20	28	1.99
14568241--14568532	157	1.9	157	82	2	372	23	30	27	18	1.98
14568378--14568763	169	2.3	169	76	7	395	22	29	27	20	1.98
14568213--14569974	525	3.4	521	81	5	1832	22	29	27	20	1.99
14569288--14569791	159	3.2	159	75	8	382	23	29	27	20	1.99
14569765--14569815	26	2.0	26	96	0	93	25	19	27	27	1.99
14569948--14570000	26	2.0	26	96	0	97	24	20	26	28	1.99
14570220--14570270	26	2.0	26	88	0	75	29	15	23	31	1.95
14570932--14570989	26	2.2	27	90	3	91	27	20	22	29	1.99
14571790--14572405	158	3.9	158	76	3	524	24	29	27	18	1.98
14572650--14573104	159	2.9	159	81	2	513	22	30	27	19	1.98
14574715--14575236	159	3.3	157	73	7	464	23	29	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14576400--14576450	26	2.0	26	88	0	75	25	19	25	29	1.99
14576484--14576630	79	1.9	79	85	0	204	22	29	33	14	1.93
14576689--14576741	26	2.0	26	89	7	81	30	20	22	26	1.98
14577039--14577091	26	2.0	26	85	7	72	26	16	28	28	1.97
14577949--14577998	26	1.9	26	91	0	82	26	18	32	24	1.97
14578155--14578207	26	2.0	26	89	7	81	28	18	24	28	1.98
14578996--14579048	26	2.0	26	92	0	88	22	20	28	28	1.99
14578490--14579121	341	1.8	343	82	4	803	24	28	27	19	1.98
14579718--14579770	26	2.0	26	89	7	81	28	18	24	28	1.98
14579914--14579966	26	2.0	26	96	0	97	30	18	22	28	1.98
14580383--14580435	26	2.0	26	92	0	88	24	13	30	32	1.93
14580970--14581003	16	2.2	16	89	5	52	20	52	20	5	1.67
14581131--14581988	159	5.4	158	76	5	708	22	31	27	18	1.97
14581158--14581988	318	2.6	316	83	3	997	22	31	28	17	1.97
14582072--14582124	26	2.0	26	92	0	88	28	18	24	28	1.98
14582661--14582713	26	2.0	26	88	0	79	32	20	22	24	1.98
14583162--14583214	26	2.0	26	88	0	79	30	18	22	28	1.98
14583530--14583582	26	2.0	26	88	0	79	24	16	26	32	1.97
14582908--14583595	368	1.9	356	81	6	837	22	29	27	20	1.99
14583543--14583848	152	2.0	152	96	1	569	27	22	27	21	1.99
14584408--14584460	26	2.0	26	85	7	72	33	22	18	24	1.97
14584588--14584926	158	2.1	157	78	6	353	25	30	26	17	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14585084--14585582	158	3.2	156	78	3	514	23	32	25	18	1.97
14588054--14588106	26	2.0	26	92	7	90	28	20	24	26	1.99
14588080--14588573	158	3.1	157	75	6	453	25	28	24	21	1.99
14589737--14589788	26	2.0	26	92	7	88	32	19	21	26	1.97
14590102--14590153	26	2.0	26	88	7	79	28	19	25	26	1.98
14590807--14590859	26	2.0	26	89	7	81	32	20	20	26	1.98
14590832--14591611	317	2.4	316	82	5	875	22	28	28	20	1.99
14591651--14591703	26	2.0	26	92	0	88	32	24	22	20	1.98
14592495--14592545	26	2.0	26	88	7	77	35	13	23	27	1.93
14592521--14592974	159	2.9	158	75	4	446	23	29	27	19	1.98
14593696--14594218	159	3.3	158	82	6	592	22	30	27	19	1.98
14594192--14594244	26	2.0	26	92	0	88	26	20	26	26	1.99
14594390--14594442	26	2.0	26	89	7	81	28	18	24	28	1.98
14594415--14594794	155	2.4	156	78	4	415	25	29	26	19	1.99
14594415--14594842	159	2.7	158	75	7	404	25	28	26	19	1.98
14595254--14595304	26	2.0	26	84	0	66	27	21	19	31	1.97
14596827--14597506	316	2.2	316	83	2	866	23	30	26	19	1.98
14596827--14597506	158	4.3	158	73	8	526	23	30	26	19	1.98
14597480--14597532	26	2.0	26	88	0	79	26	15	26	32	1.95
14598212--14598264	26	2.0	26	89	7	81	28	18	24	28	1.98
14599089--14599141	26	2.0	26	92	7	90	28	16	24	30	1.97
14599114--14599613	158	3.2	158	77	5	422	23	30	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14599587--14599639	26	2.0	26	92	0	88	26	20	26	26	1.99
14600201--14600247	11	4.3	11	91	0	76	10	31	31	25	1.90
14600208--14600255	11	4.4	11	86	0	51	14	27	33	25	1.94
14600208--14600255	22	2.2	22	88	0	69	14	27	33	25	1.94
14600325--14600377	26	2.0	26	85	7	72	30	16	24	28	1.97
14600334--14600385	26	2.0	26	85	7	70	36	17	21	25	1.94
14600350--14600793	159	2.8	156	76	6	444	23	28	28	19	1.98
14600826--14600878	26	2.0	26	88	0	79	26	16	28	28	1.97
14601651--14601703	26	2.0	26	88	0	79	33	20	20	24	1.97
14601692--14602069	158	2.4	158	78	5	413	26	29	24	19	1.99
14602176--14602601	191	2.2	193	85	4	556	24	28	24	21	1.99
14602564--14603066	159	3.2	159	76	8	436	23	32	25	18	1.97
14602881--14603304	183	2.3	183	84	3	532	24	29	26	19	1.98
14603223--14603275	26	2.0	26	92	0	88	24	18	28	28	1.98
14603226--14603282	26	2.2	26	87	3	78	28	19	28	24	1.98
14603955--14604007	26	2.0	26	96	0	97	33	18	22	24	1.97
14604508--14604560	26	2.0	26	86	13	74	30	16	22	30	1.96
14605062--14605410	158	2.2	158	77	8	350	22	28	28	20	1.99
14605533--14605585	26	2.0	26	85	0	70	30	16	22	30	1.96
14606562--14606613	26	2.0	26	84	0	68	25	9	28	36	1.87
14608491--14608541	26	2.0	26	88	7	77	27	15	27	29	1.96
14608674--14609033	184	2.0	184	82	5	451	25	26	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14608332--14608949	342	1.8	342	82	4	753	26	27	25	20	1.99
14609331--14609383	26	2.0	26	89	7	81	24	16	28	30	1.97
14610052--14610104	26	2.0	26	88	0	79	32	20	22	24	1.98
14610555--14610607	26	2.0	26	96	0	97	24	20	28	26	1.99
14610764--14611133	184	2.0	184	86	1	517	23	29	26	20	1.99
14610960--14611448	158	3.1	157	81	3	579	22	29	28	20	1.98
14611422--14611474	26	2.0	26	92	7	90	28	20	24	26	1.99
14610741--14611942	499	2.4	501	90	2	1844	23	28	27	20	1.99
14611447--14612203	317	2.4	317	79	4	844	24	29	27	19	1.98
14611447--14612218	159	4.9	156	71	9	524	24	29	27	19	1.98
14613114--14613166	26	2.0	26	82	7	63	30	18	24	26	1.98
14613627--14613679	26	2.0	26	82	7	63	32	20	22	24	1.98
14613723--14614155	159	2.7	155	75	10	401	23	30	26	20	1.98
14614887--14615312	159	2.7	158	76	5	410	23	27	27	20	1.99
14615728--14615780	26	2.0	26	85	7	72	30	22	22	24	1.99
14616231--14616283	26	2.0	26	92	0	88	24	18	28	28	1.98
14616964--14617033	26	2.7	26	90	0	113	32	17	22	27	1.96
14617775--14617827	26	2.0	26	92	7	90	33	20	18	26	1.96
14617617--14617979	183	2.0	184	84	4	482	25	28	24	21	1.99
14617800--14618294	159	3.1	157	75	5	415	23	29	27	20	1.99
14618276--14618325	26	1.9	26	91	0	82	28	18	28	26	1.98
14618486--14618852	170	2.2	170	78	3	373	24	29	24	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14618826--14618878	26	2.0	26	85	7	72	22	16	26	33	1.96
14620437--14620859	157	2.7	158	75	7	421	25	27	27	19	1.99
14621007--14621059	26	2.0	26	88	0	79	28	16	24	30	1.97
14621639--14621669	11	2.8	11	100	0	62	25	45	19	9	1.81
14622084--14622136	26	2.0	26	92	0	88	24	18	26	30	1.98
14622808--14623103	159	1.9	159	86	1	432	22	32	28	16	1.96
14623149--14623201	26	2.0	26	85	7	72	28	20	26	24	1.99
14623679--14624278	159	3.8	158	75	6	575	22	30	27	19	1.98
14623520--14624340	318	2.6	313	82	4	986	22	29	26	20	1.99
14624314--14624366	26	2.0	26	89	7	81	28	20	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138