genome.fa.s124.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  1  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2928	180	16.4	178	72	12	1247	39	7	10	42	1.68
25--4919	543	9.2	531	72	12	1692	40	8	9	41	1.68
1859--2173	171	1.9	169	82	1	405	41	8	10	39	1.71
2234--2674	182	2.4	182	80	3	476	42	8	9	39	1.69
2225--4044	181	10.1	178	71	12	674	41	8	9	40	1.68
2243--3434	541	2.2	541	78	9	1204	42	8	8	40	1.66
3483--4920	181	8.1	180	71	11	700	39	8	9	41	1.69
3908--4325	163	2.5	164	78	4	453	39	8	9	42	1.68
5297--7832	181	14.1	178	74	9	1682	41	9	7	40	1.66
5338--7832	539	4.6	529	76	9	1751	42	9	7	40	1.66
5297--7831	356	7.1	356	75	8	1740	41	9	7	40	1.66
7398--7433	16	2.1	17	90	10	56	41	5	8	44	1.58
7900--12867	181	27.7	181	76	8	3659	40	8	9	41	1.68
13010--13247	120	2.0	120	83	3	300	45	7	12	34	1.70
13131--13770	181	3.5	178	80	4	660	42	7	10	39	1.67
13734--13766	18	1.9	17	88	11	50	48	6	6	39	1.53
13729--13775	19	2.7	18	80	12	62	44	4	10	40	1.59
13792--15835	181	11.4	181	77	6	1705	42	9	7	40	1.67
15860--17420	180	8.8	179	73	8	1024	40	9	7	41	1.67
16309--16355	25	2.0	23	83	8	58	51	0	0	48	1.00
15860--17420	360	4.4	355	76	8	1150	40	9	7	41	1.67
17776--17869	45	2.1	45	84	4	118	45	8	5	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17820--18367	179	3.0	177	79	7	498	42	8	8	40	1.66
17849--18887	181	5.8	179	76	7	709	42	9	8	40	1.67
18412--18730	175	1.8	176	82	6	414	41	10	9	39	1.72
18412--18853	174	2.5	175	79	6	417	43	9	8	38	1.68
18806--18946	74	1.9	74	86	2	203	35	11	9	43	1.72
19439--21793	181	13.1	180	76	9	1683	42	9	8	39	1.67
22036--22435	180	2.2	181	81	7	463	43	8	7	40	1.64
22439--23613	180	6.5	179	71	10	595	40	8	10	41	1.69
23614--24902	182	7.3	180	74	10	987	38	8	10	42	1.69
23652--24683	356	2.9	354	79	8	977	39	8	9	42	1.69
24547--24857	166	1.9	166	84	4	423	38	7	10	44	1.66
24966--26473	181	8.4	180	76	6	1107	40	8	9	40	1.70
25718--25768	18	2.8	19	80	17	72	43	3	11	41	1.60
24998--26409	715	2.0	713	79	5	1537	40	8	9	40	1.70
28280--34746	181	36.0	179	74	7	3972	40	8	10	41	1.69
31632--31665	16	2.1	16	89	10	52	32	8	5	52	1.56
34753--34797	21	2.1	22	84	12	58	35	0	0	64	0.94
34803--42741	181	44.5	180	72	9	3868	40	8	9	41	1.68
36614--36904	156	1.9	156	81	7	358	37	8	10	43	1.69
38087--38118	16	2.0	16	93	0	55	50	6	9	34	1.60
38542--39024	180	2.7	174	78	5	416	40	7	10	41	1.67
42634--42893	141	1.8	141	81	6	321	41	8	10	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42750--43360	181	3.4	180	79	9	608	41	7	9	41	1.66
43389--44338	333	2.9	332	87	2	1289	26	19	24	28	1.99
50537--53253	181	15.2	181	74	8	1983	40	8	9	41	1.67
50785--51242	182	2.5	182	79	2	447	41	9	8	41	1.66
50562--53236	533	5.0	533	76	9	1754	40	8	9	41	1.67
52406--52728	169	1.9	168	82	5	400	40	5	9	43	1.61
53239--54867	181	9.1	180	77	6	1306	41	8	8	41	1.66
53239--54836	364	4.4	358	77	9	1369	41	7	9	41	1.66
54917--56597	181	9.4	181	73	8	1181	40	8	9	41	1.69
55616--55932	173	1.8	171	80	6	372	38	8	10	41	1.71
56600--57494	181	5.0	180	74	5	547	39	9	10	41	1.71
55910--57297	699	2.0	698	78	5	1464	39	8	9	41	1.69
57365--57648	157	1.8	157	82	11	366	42	8	10	39	1.69
56643--58267	880	1.8	879	78	6	1838	39	8	9	41	1.69
57527--59803	181	12.7	180	76	8	1721	41	7	9	42	1.66
57527--59803	529	4.2	528	78	7	1685	41	7	9	42	1.66
57527--59791	359	6.3	360	76	8	1757	41	7	9	41	1.65
60539--60583	20	2.2	20	92	0	72	33	42	15	8	1.78
60661--60695	14	2.5	14	85	0	52	17	2	0	80	0.84
60715--60743	8	3.6	8	100	0	58	89	0	0	10	0.48
60916--60946	16	2.0	15	93	6	53	70	3	0	25	1.02
61293--61495	54	3.7	53	76	8	199	50	8	13	26	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61291--61495	113	1.8	114	90	2	333	51	8	13	26	1.70
68287--68319	2	16.5	2	93	0	57	45	0	0	54	0.99
68470--68495	4	6.5	4	100	0	52	73	0	26	0	0.84
71196--71226	2	15.5	2	93	0	53	48	3	0	48	1.17
71319--71349	15	2.1	15	94	5	55	90	9	0	0	0.46
81309--81353	23	2.0	22	83	12	56	35	2	2	60	1.22
91168--91192	2	12.5	2	100	0	50	52	0	0	48	1.00
102152--102185	3	11.3	3	100	0	68	67	0	0	32	0.91
103569--103602	16	2.2	15	94	5	59	47	5	0	47	1.26
103679--103730	20	2.5	20	84	6	59	63	3	1	30	1.23
105253--105306	2	27.0	2	100	0	108	50	0	50	0	1.00
106747--106772	2	13.0	2	100	0	52	50	0	0	50	1.00
107226--107271	6	7.7	6	97	0	83	30	52	17	0	1.45
108559--108589	3	10.3	3	100	0	62	32	0	0	67	0.91
112318--112356	21	1.9	21	89	5	62	56	0	0	43	0.99
112317--112364	22	2.2	21	78	10	53	54	2	0	43	1.12
112391--112494	18	5.2	20	70	22	69	59	2	0	37	1.12
112414--112667	18	14.8	18	66	21	95	56	3	0	39	1.21
112392--112456	20	3.3	19	79	20	71	60	4	0	35	1.18
112454--112508	12	4.6	12	80	15	60	60	1	0	38	1.08
112421--112528	23	4.6	23	76	14	96	58	1	0	38	1.15
112412--112578	46	3.7	44	70	13	117	58	2	0	38	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112532--112777	26	9.1	27	66	22	76	54	2	1	41	1.25
112474--112637	46	3.4	47	71	11	136	54	3	1	40	1.26
112414--112787	15	24.1	15	66	22	72	55	2	1	40	1.22
112645--112804	23	6.8	23	68	19	107	53	1	2	42	1.22
112421--112626	23	8.7	24	70	23	93	57	3	0	38	1.22
112694--112805	54	2.1	54	84	5	145	54	0	2	41	1.20
112700--112819	54	2.2	54	81	4	132	57	0	3	38	1.21
114793--114824	2	16.0	2	100	0	64	50	0	0	50	1.00
115286--115417	70	1.9	71	92	4	223	29	16	19	34	1.94
116741--116778	15	2.3	16	86	13	51	28	0	0	71	0.87
118625--118670	24	2.0	24	86	4	67	30	6	15	47	1.70
119031--119155	44	2.8	44	83	4	110	38	8	15	38	1.77
131325--131349	11	2.3	11	100	0	50	32	0	8	60	1.26
131940--132025	38	2.2	39	81	6	113	47	15	5	31	1.68
132075--132168	20	5.0	18	75	16	84	48	9	6	35	1.61
132185--132252	22	3.1	22	81	12	95	50	10	4	35	1.57
132181--132249	21	3.1	22	80	14	88	52	10	4	33	1.55
132329--132444	24	5.0	24	72	18	102	53	10	4	31	1.54
132390--132435	20	2.2	20	84	3	56	54	10	4	30	1.55
132338--132445	47	2.3	47	89	6	159	54	10	3	31	1.51
133113--133162	26	2.0	26	84	4	66	70	6	0	24	1.10
133565--133608	16	2.9	16	86	6	65	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137269--137579	58	5.3	58	81	7	337	33	12	7	46	1.70
137291--137589	118	2.5	117	84	7	374	33	11	7	47	1.67
138088--138124	19	1.9	20	88	5	58	35	16	16	32	1.91
138173--138207	11	3.2	11	87	0	52	60	14	2	22	1.48
139099--139226	34	3.7	34	78	9	143	38	11	18	31	1.87
139099--139227	17	7.5	17	73	5	82	37	11	19	31	1.87
139099--139238	69	2.0	68	86	4	192	36	12	19	32	1.88
139165--139274	52	2.1	52	81	3	123	37	13	17	31	1.89
139229--139264	18	1.9	19	94	5	65	38	16	11	33	1.84
139179--139295	52	2.2	52	78	3	119	37	13	15	33	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138