genome.fa.s124.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  105  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16078825--16078877	26	2.0	26	92	7	90	30	20	22	26	1.98
16080096--16080151	26	2.2	26	90	6	87	30	19	21	28	1.98
16079533--16080369	392	2.1	391	84	2	1079	24	26	25	24	2.00
16080291--16080342	26	2.0	26	88	7	79	28	17	21	32	1.96
16079533--16080373	196	4.3	196	80	2	889	24	26	25	24	2.00
16081360--16081412	26	2.0	26	92	7	90	28	20	24	26	1.99
16081386--16081886	157	3.2	157	77	5	472	24	30	25	19	1.98
16081860--16081912	26	2.0	26	96	0	97	28	20	24	26	1.99
16082011--16082332	171	1.9	171	84	0	428	23	29	27	19	1.98
16082898--16082950	26	2.0	26	85	0	70	28	18	24	28	1.98
16084528--16084580	26	2.0	26	92	7	90	26	24	20	28	1.99
16085454--16085506	26	2.0	26	88	0	79	28	26	18	26	1.98
16085404--16086033	185	3.4	183	78	8	624	21	26	27	25	1.99
16085838--16085888	26	2.0	26	88	0	75	27	29	13	29	1.94
16086704--16086756	26	2.0	26	89	7	81	28	24	18	28	1.98
16086911--16086963	26	2.0	26	92	7	90	26	26	20	26	1.99
16087238--16087292	26	2.2	26	90	3	85	29	23	20	27	1.99
16087425--16087476	26	2.0	26	85	7	70	28	23	17	30	1.97
16087622--16087674	26	2.0	26	88	0	79	30	24	16	28	1.97
16088685--16088737	26	2.0	26	88	0	79	30	26	18	24	1.98
16088633--16089396	343	2.2	343	83	3	941	19	27	29	22	1.98
16089538--16089590	26	2.0	26	88	0	79	28	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16090614--16090984	159	2.3	159	78	5	374	18	25	31	23	1.98
16090797--16091169	185	2.0	185	84	1	487	21	26	29	22	1.99
16090886--16091715	343	2.4	343	79	3	952	20	27	28	23	1.99
16092162--16092214	26	2.0	26	89	7	81	28	20	18	32	1.97
16093366--16093418	26	2.0	26	89	7	81	32	20	18	28	1.97
16093338--16094210	380	2.3	379	82	3	1029	23	26	26	23	2.00
16094796--16094851	26	2.2	26	90	0	85	28	23	21	26	1.99
16094577--16095747	551	2.1	552	84	4	1515	20	26	29	23	1.99
16095350--16095402	26	2.0	26	88	0	79	30	26	18	24	1.98
16096407--16096483	26	3.0	26	96	0	136	28	28	18	24	1.98
16096457--16096960	158	3.2	159	79	5	540	18	28	30	22	1.98
16096881--16097745	380	2.3	380	83	2	1069	21	26	26	24	2.00
16098327--16099102	342	2.3	342	80	4	850	20	26	28	24	1.99
16099048--16099100	26	2.0	26	92	7	90	26	24	20	28	1.99
16099768--16099820	26	2.0	26	88	0	79	24	30	18	26	1.98
16099220--16101085	624	3.0	624	95	0	3362	29	22	20	27	1.99
16100392--16100444	26	2.0	26	88	0	79	24	28	20	26	1.99
16101512--16101564	26	2.0	26	92	7	90	26	22	20	30	1.98
16102370--16102425	26	2.2	26	87	6	78	32	23	16	28	1.96
16102747--16102798	26	2.0	26	84	0	68	30	30	11	26	1.92
16102925--16103288	158	2.3	159	78	6	396	20	25	29	25	1.99
16103261--16103312	26	2.0	26	92	7	88	26	25	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16103385--16103410	11	2.4	11	100	0	52	15	26	38	19	1.91
16103790--16103840	26	2.0	25	85	11	68	29	23	19	27	1.98
16104279--16104331	26	2.0	26	85	7	72	28	22	18	30	1.98
16105135--16105187	26	2.0	26	88	0	79	26	24	20	28	1.99
16105168--16105495	159	2.1	159	78	1	345	20	25	30	24	1.99
16106860--16106911	26	2.0	26	92	7	88	26	25	19	28	1.98
16108594--16108698	26	4.0	26	90	4	158	25	24	20	29	1.99
16109024--16109076	26	2.0	26	96	0	97	26	28	20	24	1.99
16109850--16109902	26	2.0	26	96	0	97	30	24	18	26	1.98
16110502--16110554	26	2.0	26	89	7	81	26	24	20	28	1.99
16110845--16110897	26	2.0	26	85	7	72	33	22	15	28	1.94
16112042--16112094	26	2.0	26	92	7	90	26	24	20	28	1.99
16112251--16112300	26	1.9	26	91	0	82	24	26	20	30	1.98
16111500--16112909	709	2.0	710	81	3	1667	20	27	28	23	1.99
16113118--16113170	26	2.0	26	89	7	81	26	26	18	28	1.98
16113615--16113667	26	2.0	26	85	7	72	28	22	20	28	1.99
16113822--16113874	26	2.0	26	96	0	97	26	28	20	24	1.99
16114188--16114237	26	1.9	26	88	8	75	24	22	20	34	1.97
16114928--16114960	11	3.0	11	95	0	57	18	21	36	24	1.95
16115727--16115779	26	2.0	26	89	7	81	28	22	18	30	1.98
16115922--16115972	26	2.0	26	92	0	84	25	27	19	27	1.99
16115709--16116132	184	2.2	190	77	7	434	21	24	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16116264--16116315	26	2.0	25	96	3	95	30	23	17	28	1.97
16116984--16117036	26	2.0	26	88	0	79	28	26	18	26	1.98
16117478--16117530	26	2.0	26	89	7	81	28	24	20	26	1.99
16117845--16117897	26	2.0	26	85	0	70	28	24	18	28	1.98
16118345--16118396	26	2.0	26	92	7	88	26	25	19	28	1.98
16118743--16118795	26	2.0	26	89	7	81	24	20	22	32	1.98
16119138--16119558	159	2.7	158	76	5	438	19	30	27	22	1.98
16119529--16119581	26	2.0	26	92	7	90	24	22	22	30	1.99
16118802--16122720	855	4.5	857	84	6	4626	21	27	28	22	1.99
16120383--16120435	26	2.0	26	96	0	97	24	22	24	28	2.00
16121326--16121368	12	3.7	12	78	6	52	37	25	30	6	1.82
16121323--16121373	12	4.3	12	77	5	50	37	25	29	7	1.84
16122520--16122572	26	2.0	26	88	0	79	32	26	15	26	1.95
16127537--16127947	153	2.7	150	82	9	482	17	30	30	22	1.96
16127920--16127972	26	2.0	26	92	7	90	26	24	20	28	1.99
16128288--16128341	26	2.1	26	86	6	74	33	24	14	27	1.94
16128635--16128687	26	2.0	26	85	0	70	28	24	22	24	2.00
16128268--16128992	343	2.1	345	79	6	765	20	24	29	25	1.99
16128661--16129162	158	3.2	157	75	7	483	20	24	30	25	1.99
16129136--16129188	26	2.0	26	92	0	88	26	22	18	32	1.97
16129504--16129556	26	2.0	26	96	0	97	26	28	20	24	1.99
16129656--16130063	159	2.6	159	79	3	462	20	25	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16129225--16131412	687	3.2	674	79	7	2098	20	26	28	24	1.99
16130690--16130742	26	2.0	26	92	7	90	30	24	16	28	1.97
16130587--16131097	197	2.7	196	80	9	525	20	26	28	24	1.99
16130884--16130937	26	2.1	26	86	6	74	31	25	16	25	1.97
16131000--16131412	157	2.6	156	76	6	411	17	28	29	25	1.97
16130153--16131439	696	1.8	697	83	1	1682	20	26	28	24	1.99
16131385--16131437	26	2.0	26	85	7	72	28	24	16	30	1.97
16131513--16131550	11	3.5	11	96	0	67	26	39	31	2	1.70
16132130--16132182	26	2.0	26	85	7	72	28	26	16	28	1.97
16132807--16134131	159	8.1	158	72	10	641	19	27	30	23	1.98
16133123--16133484	183	2.0	185	86	1	512	19	28	29	22	1.98
16133665--16134131	158	2.9	157	77	7	471	18	25	31	24	1.98
16133300--16134131	317	2.6	320	80	8	931	19	26	30	23	1.98
16134105--16134157	26	2.0	26	89	7	81	26	18	24	30	1.98
16134826--16134877	25	2.0	25	81	3	59	28	28	17	25	1.97
16134851--16135348	157	3.2	156	76	8	526	20	27	30	21	1.98
16136182--16136543	159	2.3	154	80	7	390	20	26	28	24	1.99
16136515--16136567	26	2.0	26	92	7	90	26	24	20	28	1.99
16136808--16137201	183	2.1	184	84	4	519	20	29	27	22	1.99
16136808--16137251	183	2.4	183	82	4	504	20	29	27	22	1.98
16138292--16138344	26	2.0	26	88	0	79	28	22	16	32	1.96
16138793--16138844	26	2.0	26	85	14	72	30	25	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16139191--16139684	157	3.1	157	71	9	430	20	26	29	23	1.99
16140112--16140169	26	2.2	26	81	3	62	62	10	6	20	1.50
16147906--16147957	26	2.0	26	92	0	86	30	23	19	26	1.98
16148070--16148433	159	2.3	159	78	4	376	19	26	29	24	1.98
16148615--16148667	26	2.0	26	92	0	88	26	26	20	26	1.99
16149607--16150014	159	2.5	160	78	7	400	16	27	31	24	1.97
16152674--16152724	26	2.0	26	92	0	84	25	27	19	27	1.99
16152765--16153835	159	6.8	157	74	6	640	19	26	29	24	1.98
16152708--16153835	316	3.6	315	82	2	1204	19	25	29	24	1.99
16153809--16153860	26	2.0	26	85	7	70	28	23	17	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138