genome.fa.s124.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  113  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16703984--16704036	26	2.0	26	85	0	70	26	18	28	26	1.98
16705291--16705343	26	2.0	26	88	0	79	26	18	26	28	1.98
16705671--16705723	26	2.0	26	85	7	72	32	20	20	26	1.98
16705855--16705907	26	2.0	26	85	7	72	24	15	28	32	1.95
16706587--16707079	158	3.1	158	76	4	393	22	29	27	20	1.99
16707053--16707105	26	2.0	26	96	0	97	24	20	28	26	1.99
16708303--16708789	159	3.1	159	74	5	448	21	30	28	19	1.98
16708802--16708854	26	2.0	26	85	0	70	26	16	26	30	1.97
16709521--16709573	26	2.0	26	92	7	90	28	20	24	26	1.99
16709546--16710046	159	3.2	158	75	3	440	23	30	26	19	1.98
16709829--16710357	278	1.9	278	86	3	760	23	29	26	19	1.98
16710301--16710350	26	1.9	26	91	0	82	26	20	30	24	1.98
16710153--16710683	184	2.9	184	81	3	586	23	29	27	19	1.98
16710482--16710534	26	2.0	26	85	7	72	28	18	26	26	1.98
16710624--16711009	158	2.4	158	72	7	350	21	28	27	22	1.99
16710840--16711269	184	2.3	184	83	4	521	25	29	25	19	1.99
16711167--16711219	26	2.0	26	92	0	88	26	20	26	26	1.99
16711879--16711931	26	2.0	26	92	0	88	24	18	28	28	1.98
16712959--16713011	26	2.0	26	92	7	90	28	20	24	26	1.99
16713048--16713517	157	3.0	156	74	5	455	22	29	27	20	1.98
16713575--16713627	26	2.0	26	89	7	81	30	20	22	26	1.98
16714681--16714733	26	2.0	26	92	7	90	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16714496--16714892	184	2.2	185	84	1	492	24	27	25	22	2.00
16715406--16715900	158	3.1	156	77	7	514	21	29	28	20	1.98
16715881--16715933	26	2.0	26	92	0	88	26	16	26	30	1.97
16716522--16716565	11	4.0	11	90	0	70	20	38	25	15	1.92
16716831--16716883	26	2.0	26	89	7	81	30	18	22	28	1.98
16716856--16717319	159	2.9	158	75	6	420	23	30	26	19	1.98
16717331--16717688	196	1.8	197	83	3	479	24	29	26	20	1.99
16717564--16718056	159	3.1	159	76	8	403	23	31	26	18	1.98
16718264--16718709	158	2.8	156	75	6	430	23	29	27	18	1.98
16718751--16718803	26	2.0	26	92	7	90	28	20	24	26	1.99
16719028--16719062	12	2.9	12	91	0	52	11	45	20	22	1.82
16719987--16720039	26	2.0	26	92	7	90	28	20	24	26	1.99
16720013--16720506	158	3.1	156	76	10	486	24	29	26	19	1.98
16720018--16720451	159	2.7	158	81	5	493	24	29	27	18	1.98
16721210--16721262	26	2.0	26	85	7	72	26	18	24	30	1.98
16721654--16721692	20	2.0	20	89	0	60	10	48	17	23	1.78
16722601--16723010	159	2.6	159	77	6	420	24	29	28	17	1.97
16723456--16723508	26	2.0	26	85	7	72	24	15	28	32	1.95
16723832--16723884	26	2.0	26	81	0	61	30	18	26	24	1.98
16724335--16724387	26	2.0	26	96	0	97	28	20	24	26	1.99
16725414--16725480	26	2.6	26	95	0	125	22	16	26	34	1.95
16725806--16725858	26	2.0	26	89	7	81	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16725938--16726331	160	2.4	159	73	9	364	23	30	26	20	1.98
16726316--16726368	26	2.0	26	85	7	72	22	16	30	30	1.96
16726947--16726978	11	2.9	11	90	0	55	15	25	31	28	1.96
16727550--16727603	26	2.1	26	85	0	72	29	20	24	25	1.99
16727915--16727967	26	2.0	26	89	7	81	30	22	20	26	1.98
16728124--16728783	158	4.2	159	74	6	520	22	29	27	20	1.98
16728134--16728783	317	2.1	315	81	1	728	22	30	28	20	1.98
16728757--16728809	26	2.0	26	92	0	88	24	18	28	28	1.98
16729388--16729420	11	3.0	11	90	0	57	9	33	36	21	1.85
16729948--16730000	26	2.0	26	89	7	81	28	18	24	28	1.98
16730136--16730187	26	2.0	26	96	3	97	28	21	23	26	1.99
16730635--16730687	26	2.0	26	88	0	79	28	20	24	26	1.99
16740002--16740053	26	2.0	26	88	7	79	30	19	23	26	1.98
16740026--16740390	158	2.3	157	79	8	384	24	30	26	18	1.98
16740502--16740554	26	2.0	26	96	0	97	24	20	28	26	1.99
16740816--16740925	53	2.1	53	85	0	148	9	40	21	28	1.84
16741281--16741330	26	1.9	26	95	0	91	26	20	30	24	1.98
16741303--16741670	170	2.2	169	80	6	395	20	26	29	23	1.99
16741644--16741696	26	2.0	26	89	7	81	30	16	24	28	1.97
16743089--16743192	54	1.9	54	92	0	172	11	42	22	24	1.86
16743144--16743586	159	2.8	158	77	5	399	23	31	25	20	1.98
16744196--16744947	158	4.7	158	73	9	522	24	29	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16744199--16744944	317	2.3	324	79	7	802	24	29	27	19	1.98
16745465--16745517	26	2.0	26	96	0	97	24	20	28	26	1.99
16747249--16747301	26	2.0	26	85	0	70	24	20	26	28	1.99
16747617--16747671	27	2.0	27	93	6	94	27	21	25	25	2.00
16748380--16748669	161	1.8	158	79	6	334	24	29	27	19	1.98
16748789--16748814	13	2.0	13	100	0	52	15	23	53	7	1.67
16749763--16749815	26	2.0	26	92	7	90	28	16	24	30	1.97
16750265--16750316	25	2.0	26	96	3	97	25	17	26	30	1.97
16751179--16751230	26	2.0	25	88	3	77	30	19	21	28	1.97
16750387--16751410	537	1.9	535	80	4	1213	23	28	26	21	1.99
16752084--16752136	26	2.0	26	85	7	72	30	22	22	24	1.99
16753454--16753533	26	3.0	26	89	3	124	27	18	26	27	1.98
16753297--16753690	209	1.9	209	80	6	458	25	26	25	21	2.00
16753830--16753878	25	2.0	25	88	8	73	30	18	20	30	1.96
16762658--16762710	26	2.0	26	89	7	81	32	18	22	26	1.97
16762788--16763185	159	2.5	158	74	6	374	23	28	25	22	1.99
16763159--16763211	26	2.0	26	88	0	79	28	20	24	26	1.99
16763936--16763988	26	2.0	26	88	0	79	26	18	26	28	1.98
16764302--16764360	26	2.3	27	88	5	86	37	20	16	25	1.93
16764797--16764849	26	2.0	26	89	7	81	28	20	24	26	1.99
16765751--16765854	55	1.9	55	91	0	172	12	42	22	23	1.87
16766858--16767362	158	3.2	159	75	7	488	22	28	28	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16767336--16767388	26	2.0	26	96	0	97	28	20	24	26	1.99
16768176--16768228	26	2.0	26	96	0	97	24	20	28	26	1.99
16769233--16769285	26	2.0	26	85	0	70	28	18	22	30	1.98
16769074--16769637	184	3.0	183	78	10	573	21	27	28	22	1.99
16769201--16769584	196	2.0	196	83	4	488	20	26	28	23	1.99
16770297--16770349	26	2.0	26	92	7	90	24	22	26	26	2.00
16769739--16770434	367	1.9	368	85	3	974	23	28	27	20	1.99
16771030--16771082	26	2.0	26	85	7	72	32	20	22	24	1.98
16771462--16771487	13	2.0	13	100	0	52	15	23	53	7	1.67
16772425--16772477	26	2.0	26	92	7	90	28	16	24	30	1.97
16772929--16772981	26	2.0	26	96	0	97	24	16	28	30	1.97
16773847--16773898	26	2.0	25	92	3	86	28	19	23	28	1.98
16773037--16774078	537	1.9	538	82	2	1281	23	28	26	20	1.99
16774740--16774792	26	2.0	26	89	7	81	30	20	22	26	1.98
16775623--16775675	26	2.0	26	89	7	81	28	18	24	28	1.98
16776123--16776201	26	3.0	26	92	0	131	26	18	26	27	1.98
16776502--16776552	26	2.0	26	88	7	77	29	17	23	29	1.97
16776537--16776898	158	2.3	157	79	6	358	25	31	25	18	1.98
16777002--16777054	26	2.0	26	88	0	79	26	22	26	24	2.00
16777945--16777997	26	2.0	26	92	7	90	26	20	26	26	1.99
16778680--16778731	26	2.0	25	92	3	86	30	17	21	30	1.96
16780121--16780173	26	2.0	26	85	7	72	32	20	22	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16780554--16780578	13	1.9	13	100	0	50	16	24	52	8	1.70
16781153--16781205	26	2.0	26	92	0	88	28	18	24	28	1.98
16781520--16781572	26	2.0	26	89	7	81	30	16	22	30	1.96
16782024--16782076	26	2.0	26	96	0	97	24	16	28	30	1.97
16782132--16783163	537	1.9	536	81	2	1239	23	29	26	20	1.99
16782940--16782991	26	2.0	25	96	3	95	28	21	23	26	1.99
16783417--16783469	26	2.0	26	85	0	70	24	22	26	26	2.00
16783781--16783828	24	2.0	25	87	4	71	29	18	27	25	1.98
16785616--16785667	26	2.0	25	88	3	77	26	15	25	32	1.95
16787872--16787922	26	2.0	26	92	7	86	29	15	25	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138