genome.fa.s124.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  115  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16882661--16882713	26	2.0	26	85	7	72	30	22	22	24	1.99
16882687--16883186	159	3.1	160	75	5	375	24	30	26	19	1.98
16884669--16884721	26	2.0	26	89	7	81	30	18	22	28	1.98
16886704--16887319	329	1.9	329	84	2	844	24	30	26	18	1.98
16886577--16887407	328	2.6	316	78	8	886	23	29	27	19	1.98
16887381--16887433	26	2.0	26	85	0	70	26	20	26	26	1.99
16887799--16887851	26	2.0	26	86	13	74	30	20	22	26	1.98
16887983--16888035	26	2.0	26	92	0	88	24	22	26	26	2.00
16888275--16888391	58	2.0	57	80	4	128	10	43	21	24	1.83
16888401--16888452	26	2.0	26	88	7	79	28	17	25	28	1.97
16893927--16893959	11	3.0	11	95	0	57	9	30	36	24	1.86
16894194--16894557	159	2.3	156	75	9	335	24	29	26	20	1.99
16894531--16894583	26	2.0	26	88	0	79	26	18	26	28	1.98
16894372--16894925	184	3.0	182	77	7	503	23	28	27	20	1.99
16895221--16895275	25	2.2	26	86	3	76	29	16	23	30	1.96
16896283--16896335	26	2.0	26	89	7	81	28	20	24	26	1.99
16897006--16897061	26	2.2	26	93	0	94	26	21	21	30	1.98
16897213--16897713	158	3.2	157	78	6	526	22	30	27	19	1.98
16897689--16897739	26	2.0	26	88	7	77	29	17	21	31	1.96
16898589--16898641	26	2.0	26	92	0	88	26	16	26	30	1.97
16899312--16899364	26	2.0	26	92	7	90	28	20	24	26	1.99
16899827--16899879	26	2.0	26	81	0	61	32	13	26	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16900281--16900333	26	2.0	26	92	0	88	24	18	28	28	1.98
16900661--16900713	26	2.0	26	89	7	81	28	18	24	28	1.98
16900696--16901105	159	2.6	159	77	5	373	23	29	28	18	1.98
16901162--16901214	26	2.0	26	89	7	81	30	20	22	26	1.98
16901489--16901541	26	2.0	26	85	0	70	22	20	26	30	1.98
16901849--16901896	21	2.3	21	100	0	96	18	39	18	22	1.92
16902234--16902286	26	2.0	26	89	7	81	30	15	26	28	1.96
16902963--16903288	158	2.1	157	83	4	406	24	29	26	19	1.98
16904220--16904248	11	2.6	11	100	0	58	17	41	24	17	1.90
16904417--16904784	185	2.0	185	84	1	486	24	30	28	16	1.96
16906039--16906091	26	2.0	26	89	7	81	30	18	22	28	1.98
16906794--16907231	159	2.8	157	77	4	396	23	30	27	18	1.98
16907282--16907333	26	2.0	26	85	7	70	30	17	23	28	1.97
16907306--16907750	157	2.8	156	73	5	410	24	30	26	18	1.98
16907780--16907832	26	2.0	26	92	0	88	24	22	26	26	2.00
16916221--16916273	26	2.0	26	88	0	79	24	18	26	30	1.98
16916564--16916616	26	2.0	26	85	7	72	28	20	22	28	1.99
16915899--16916883	343	2.9	342	79	5	1155	22	28	27	21	1.99
16916887--16917278	158	2.5	157	81	5	416	24	30	25	20	1.99
16917396--16917448	26	2.0	26	92	7	90	28	20	24	26	1.99
16918299--16918921	329	1.9	323	81	6	762	23	30	27	19	1.98
16920090--16920381	159	1.8	158	80	3	354	23	30	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16922087--16922139	26	2.0	26	85	7	72	30	18	22	28	1.98
16922942--16922994	26	2.0	26	85	0	70	22	24	30	22	1.99
16923322--16923374	26	2.0	26	85	7	72	33	18	18	28	1.95
16923452--16923839	159	2.4	159	74	7	394	21	29	26	21	1.99
16924192--16924244	26	2.0	26	92	0	88	32	18	20	28	1.97
16922389--16924421	870	2.3	872	80	5	2229	23	28	26	20	1.99
16924534--16924586	26	2.0	26	92	0	88	24	15	28	32	1.95
16924731--16924783	26	2.0	26	92	0	88	28	13	24	33	1.93
16924218--16926725	697	3.6	686	78	6	2265	23	28	26	20	1.99
16925612--16925920	159	1.9	158	81	3	361	23	31	27	17	1.97
16925929--16925981	26	2.0	26	92	7	90	26	16	26	30	1.97
16927490--16927542	26	2.0	26	88	0	79	26	22	22	28	1.99
16934198--16934250	26	2.0	26	89	7	81	20	16	30	32	1.95
16934918--16934970	26	2.0	26	89	7	81	30	20	22	26	1.98
16934943--16935383	158	2.8	158	76	3	438	23	28	28	19	1.98
16935237--16935893	356	1.8	356	83	3	856	23	30	26	19	1.98
16935616--16935986	185	2.0	185	84	4	480	25	31	25	18	1.97
16936279--16936330	26	2.0	26	84	0	68	28	13	28	28	1.94
16937017--16937510	158	3.1	157	77	5	485	23	30	27	19	1.98
16937493--16937542	25	2.0	26	88	4	75	26	16	30	28	1.96
16937654--16938148	158	3.1	157	77	7	502	21	29	28	20	1.98
16938863--16938914	26	2.0	26	88	7	79	28	17	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16939658--16939710	26	2.0	26	85	0	70	26	20	26	26	1.99
16939699--16940474	170	4.7	169	75	9	518	22	31	26	18	1.97
16940005--16940522	156	3.3	157	78	6	546	23	31	26	18	1.97
16940498--16940548	26	2.0	26	96	0	93	27	13	29	29	1.94
16941230--16941282	26	2.0	26	89	7	81	30	18	22	28	1.98
16942637--16942689	26	2.0	26	96	0	97	24	20	26	28	1.99
16942631--16942994	196	1.9	197	83	5	477	24	26	26	22	2.00
16943334--16943386	26	2.0	26	88	0	79	24	16	28	30	1.97
16943701--16943753	26	2.0	26	85	0	70	26	20	26	26	1.99
16944429--16944481	26	2.0	26	89	7	81	32	20	20	26	1.98
16943835--16944892	525	2.0	513	82	6	1238	23	29	25	20	1.99
16944454--16944948	159	3.1	158	76	5	462	25	28	26	19	1.99
16944929--16944981	26	2.0	26	89	7	81	28	16	26	28	1.97
16945593--16945645	26	2.0	26	85	7	72	28	20	22	28	1.99
16945984--16946476	158	3.1	156	75	5	495	22	28	27	21	1.99
16946450--16946502	26	2.0	26	85	7	72	28	20	22	28	1.99
16946658--16946710	26	2.0	26	85	7	72	32	20	18	28	1.97
16947514--16947563	26	1.9	26	92	8	84	32	22	22	24	1.98
16948577--16948922	159	2.2	159	82	3	410	22	29	27	20	1.98
16948896--16948948	26	2.0	26	88	0	79	28	20	24	26	1.99
16949092--16949144	26	2.0	26	85	7	72	32	18	20	28	1.97
16950129--16950181	26	2.0	26	88	0	79	24	18	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16949812--16950574	343	2.2	343	86	0	1058	22	28	28	20	1.98
16950958--16951010	26	2.0	26	96	0	97	24	20	28	26	1.99
16951160--16951528	158	2.3	158	79	5	420	25	30	25	18	1.98
16952056--16952107	26	2.0	26	88	3	79	30	21	21	26	1.98
16952264--16952316	26	2.0	26	85	7	72	28	20	24	26	1.99
16952949--16952999	26	2.0	26	84	0	66	23	15	29	31	1.95
16952681--16953218	184	2.9	184	77	7	429	23	28	26	22	1.99
16953145--16953197	26	2.0	26	89	7	81	30	18	22	28	1.98
16953295--16953894	158	3.8	157	77	5	536	22	30	27	19	1.98
16953231--16953944	315	2.3	315	83	2	873	21	31	27	20	1.98
16953447--16953915	157	3.0	155	77	6	494	22	31	27	18	1.97
16953928--16953979	26	2.0	26	84	0	68	28	17	25	28	1.97
16954647--16954699	26	2.0	26	89	7	81	28	18	24	28	1.98
16954673--16955168	159	3.1	158	80	5	581	20	31	28	19	1.97
16961888--16961940	26	2.0	26	92	7	90	24	20	26	28	1.99
16962268--16962319	26	2.0	26	88	7	79	30	19	23	26	1.98
16963489--16963539	26	2.0	26	92	7	86	29	21	21	27	1.99
16963515--16964017	160	3.2	159	76	6	412	23	29	26	20	1.99
16963991--16964043	26	2.0	26	89	7	81	24	22	24	28	2.00
16964838--16964890	26	2.0	26	92	0	88	24	18	28	28	1.98
16965744--16965796	26	2.0	26	82	13	65	28	16	22	32	1.96
16965770--16966056	158	1.8	159	78	5	330	23	27	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16966887--16967279	159	2.5	158	74	8	370	24	30	25	19	1.98
16968227--16968279	26	2.0	26	92	0	88	26	16	26	30	1.97
16968982--16969034	26	2.0	26	92	0	88	26	20	26	26	1.99
16970163--16970215	26	2.0	26	85	0	70	26	22	24	26	2.00
16970530--16970582	26	2.0	26	88	0	79	26	20	24	28	1.99
16971032--16971084	26	2.0	26	88	0	79	28	20	24	26	1.99
16971753--16971805	26	2.0	26	92	7	90	28	20	24	26	1.99
16972466--16972964	159	3.2	157	79	6	488	22	31	27	19	1.98
16972940--16972990	26	2.0	26	88	0	75	27	19	23	29	1.98
16974006--16974058	26	2.0	26	88	0	79	24	16	28	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138