genome.fa.s124.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  98  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15521523--15522024	159	3.2	157	76	9	482	22	29	27	19	1.98
15521998--15522050	26	2.0	26	92	0	88	24	18	28	28	1.98
15522529--15522559	12	2.6	12	94	0	53	38	16	29	16	1.90
15524758--15524829	26	2.8	26	95	0	126	31	22	20	25	1.98
15525237--15525289	26	2.0	26	89	7	81	26	18	26	28	1.98
15525616--15525668	26	2.0	26	89	7	81	28	20	22	28	1.99
15525647--15526021	158	2.4	157	76	5	387	25	29	25	19	1.98
15525647--15526037	159	2.5	157	75	6	385	25	29	25	19	1.98
15526117--15526169	26	2.0	26	88	0	79	28	20	24	26	1.99
15526969--15527476	158	3.2	157	78	4	439	22	29	28	18	1.98
15526969--15527570	157	3.8	157	76	5	534	22	28	29	18	1.98
15527614--15527666	26	2.0	26	85	7	72	30	18	22	28	1.98
15528639--15528690	26	2.0	25	88	3	77	30	19	21	28	1.97
15528949--15529332	196	2.0	196	80	2	439	23	28	25	22	2.00
15529678--15529730	26	2.0	26	88	0	79	26	18	26	28	1.98
15529861--15530289	158	2.7	155	73	10	377	25	26	26	21	2.00
15529202--15530529	684	1.9	685	82	4	1642	24	28	26	20	1.99
15530362--15530414	26	2.0	26	96	0	97	24	20	28	26	1.99
15530403--15530676	138	2.0	138	87	0	395	25	30	26	17	1.97
15536802--15536854	26	2.0	26	92	0	88	26	20	26	26	1.99
15537889--15538701	159	5.1	156	75	5	607	23	28	27	19	1.98
15537888--15538706	317	2.6	316	83	2	980	23	28	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15539321--15539346	11	2.4	11	100	0	52	19	30	30	19	1.96
15539759--15539811	26	2.0	26	92	0	88	26	20	26	26	1.99
15539869--15541380	159	9.4	159	75	8	926	22	29	27	19	1.98
15539865--15540692	317	2.6	317	78	5	737	23	28	27	20	1.99
15539956--15541423	489	3.1	469	77	7	1124	23	29	27	20	1.98
15540094--15541373	648	2.0	645	81	3	1518	23	29	27	19	1.98
15539956--15541423	318	4.6	316	75	7	1045	23	29	27	20	1.98
15541397--15541449	26	2.0	26	92	0	88	24	18	28	28	1.98
15541555--15541849	159	1.9	159	81	5	364	24	30	26	18	1.98
15541048--15542001	502	1.9	501	81	1	1160	24	27	26	21	1.99
15542612--15542664	26	2.0	26	92	7	90	28	20	24	26	1.99
15545406--15545458	26	2.0	26	85	7	72	33	18	20	26	1.96
15546127--15546178	26	2.0	26	88	7	79	28	17	26	26	1.97
15546629--15546679	26	2.0	26	96	0	93	25	11	31	31	1.92
15547143--15547505	158	2.3	158	80	5	419	24	28	26	20	1.99
15547619--15547671	26	2.0	26	85	7	72	28	16	24	30	1.97
15547590--15547961	196	1.9	196	86	0	528	24	26	25	22	2.00
15548315--15548367	26	2.0	26	96	0	97	24	20	28	26	1.99
15549308--15549360	26	2.0	26	92	0	88	24	18	28	28	1.98
15550855--15550907	26	2.0	26	89	7	81	30	20	22	26	1.98
15551199--15551248	26	1.9	26	100	0	100	32	20	22	26	1.98
15551395--15551447	26	2.0	26	92	7	90	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15551188--15551544	196	1.8	195	83	5	468	24	27	27	20	1.99
15551896--15551948	26	2.0	26	89	7	81	24	18	26	30	1.98
15552302--15552794	158	3.1	158	75	6	451	23	29	26	20	1.99
15554245--15554599	161	2.2	161	82	5	425	25	30	27	17	1.97
15554730--15554782	26	2.0	26	86	13	74	26	16	26	30	1.97
15554967--15555466	159	3.2	158	80	5	510	23	30	26	20	1.98
15557065--15557373	156	2.0	158	80	5	349	22	33	26	17	1.96
15557380--15557432	26	2.0	26	96	0	97	24	20	28	26	1.99
15557223--15557777	185	3.0	184	78	4	519	22	30	26	20	1.99
15558068--15558120	26	2.0	26	85	0	70	28	18	24	28	1.98
15558278--15558330	26	2.0	26	89	7	81	28	18	24	28	1.98
15558303--15558805	158	3.2	156	79	4	526	21	28	28	20	1.98
15559167--15559219	26	2.0	26	89	7	81	28	18	24	28	1.98
15559408--15559460	26	2.0	26	85	7	72	30	18	22	28	1.98
15560772--15561223	159	2.8	158	82	4	545	22	31	27	18	1.97
15561249--15561301	26	2.0	26	88	0	79	28	13	24	33	1.93
15563243--15563746	159	3.2	155	73	9	453	24	29	26	20	1.99
15563554--15564220	355	1.9	354	81	3	822	23	28	27	20	1.99
15563913--15564282	184	2.0	184	84	2	474	25	28	25	20	1.99
15564573--15564625	26	2.0	26	89	7	81	26	15	26	32	1.95
15565282--15565719	159	2.8	159	77	3	346	24	28	27	19	1.98
15565354--15565778	159	2.7	158	74	4	399	23	29	26	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15565758--15565810	26	2.0	26	89	7	81	32	20	20	26	1.98
15565599--15565968	184	2.0	184	80	1	418	23	27	26	21	1.99
15565783--15566199	159	2.6	158	81	3	482	24	29	27	18	1.98
15566258--15566310	26	2.0	26	88	0	79	26	18	26	28	1.98
15566980--15567032	26	2.0	26	89	7	81	28	18	26	26	1.98
15567874--15568365	159	3.1	157	75	6	393	23	31	25	18	1.97
15568205--15568549	184	1.9	184	83	4	455	22	29	27	20	1.98
15568826--15568875	26	2.0	26	88	7	77	26	16	28	30	1.96
15569544--15569592	26	1.9	25	91	4	80	32	22	20	24	1.98
15569725--15569777	26	2.0	26	92	0	88	22	20	28	28	1.99
15569751--15570290	170	3.2	170	83	3	633	22	30	26	20	1.98
15570732--15571709	158	6.2	157	75	5	662	23	28	27	20	1.99
15571683--15571735	26	2.0	26	92	0	88	26	20	26	26	1.99
15572333--15573227	158	5.6	158	75	8	680	25	29	25	19	1.99
15573294--15573346	26	2.0	26	85	0	70	26	20	26	26	1.99
15573711--15573763	26	2.0	26	89	7	81	32	20	20	26	1.98
15573883--15573935	26	2.0	26	88	0	79	28	20	24	26	1.99
15574303--15574355	26	2.0	26	89	7	81	30	18	22	28	1.98
15574442--15574830	159	2.5	158	75	6	383	23	30	25	20	1.98
15580438--15580490	26	2.0	26	92	0	88	26	20	26	26	1.99
15580417--15580833	185	2.3	184	81	4	475	25	29	25	20	1.99
15580648--15581010	158	2.3	158	81	5	419	24	29	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15582181--15582233	26	2.0	26	92	0	88	24	18	28	28	1.98
15583084--15583136	26	2.0	26	92	7	90	28	20	24	26	1.99
15582899--15583292	183	2.1	184	84	3	490	23	28	26	21	1.99
15583110--15583605	159	3.1	159	75	6	396	22	30	26	20	1.98
15584489--15584541	26	2.0	26	96	0	97	24	20	28	26	1.99
15585221--15585273	26	2.0	26	92	7	90	28	20	24	26	1.99
15587670--15587899	125	1.8	126	83	4	304	26	29	28	16	1.97
15587953--15588005	26	2.0	26	92	0	88	24	18	28	28	1.98
15588333--15588385	26	2.0	26	89	7	81	28	18	24	28	1.98
15589867--15589919	26	2.0	26	88	0	79	24	16	28	30	1.97
15589864--15590212	185	1.9	184	82	2	432	25	26	25	22	2.00
15590078--15590378	158	1.9	159	80	3	347	24	29	26	20	1.99
15590551--15590603	26	2.0	26	89	7	81	26	18	26	28	1.98
15590804--15591195	158	2.5	158	78	5	418	26	31	26	16	1.96
15591263--15591318	26	2.2	26	93	0	94	25	17	26	30	1.97
15592144--15592193	26	1.9	26	84	8	66	30	18	24	28	1.97
15592868--15592920	26	2.0	26	85	7	72	30	18	22	28	1.98
15593208--15593260	26	2.0	26	85	0	70	26	16	26	30	1.97
15593687--15593739	26	2.0	26	88	0	79	30	18	24	26	1.98
15593922--15594018	39	2.5	39	98	0	185	4	30	28	36	1.76
15594358--15594410	26	2.0	26	92	0	88	24	18	28	28	1.98
15594009--15595757	667	2.6	667	77	5	1811	23	29	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15596750--15596802	26	2.0	26	89	7	81	26	20	24	28	1.99
15596960--15597015	26	2.2	26	90	6	87	28	21	21	28	1.99
15597568--15598126	171	3.3	171	78	7	499	20	30	29	19	1.97
15598158--15598210	26	2.0	26	88	0	79	28	20	24	26	1.99
15598878--15598930	26	2.0	26	82	13	65	30	16	22	30	1.96
15603758--15604154	159	2.5	159	77	5	345	25	28	25	20	1.99
15604235--15604287	26	2.0	26	96	0	97	24	20	28	26	1.99
15603917--15605572	344	4.8	341	81	4	1527	24	29	26	19	1.99
15604260--15604605	159	2.2	159	78	6	351	22	30	28	18	1.98
15604579--15604631	26	2.0	26	92	0	88	24	18	28	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138