genome.fa.s124.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  101  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15757407--15757457	26	2.0	26	92	7	86	27	25	19	27	1.99
15757747--15757799	26	2.0	26	85	7	72	24	24	22	28	2.00
15759376--15759428	26	2.0	26	92	7	90	26	24	20	28	1.99
15759280--15759656	196	1.9	196	84	6	503	21	25	28	24	1.99
15759572--15759624	26	2.0	26	92	7	90	26	22	20	30	1.98
15759647--15759942	159	1.9	158	80	7	350	18	28	30	23	1.98
15759257--15760239	528	1.8	528	82	6	1237	20	26	29	23	1.99
15760100--15760151	26	2.0	25	88	3	77	25	21	23	30	1.99
15760297--15760349	26	2.0	26	85	0	70	28	22	20	28	1.99
15760079--15760436	197	1.8	197	83	4	481	20	25	28	25	1.99
15758924--15760515	725	2.2	718	79	7	1653	20	26	29	23	1.99
15763134--15763186	26	2.0	26	85	0	70	32	28	15	24	1.95
15763266--15763663	159	2.5	158	78	7	394	18	26	29	25	1.98
15763636--15763688	26	2.0	26	89	7	81	26	26	18	28	1.98
15763566--15764394	343	2.4	344	79	4	940	20	26	28	25	1.99
15764841--15764893	26	2.0	26	96	0	97	26	20	20	32	1.98
15765433--15765962	158	3.4	159	78	6	479	20	27	28	23	1.99
15766315--15766365	26	2.0	26	88	7	77	29	25	13	31	1.94
15765903--15766751	380	2.2	381	82	4	989	23	26	25	24	2.00
15768254--15768306	26	2.0	26	92	7	90	26	24	20	28	1.99
15768974--15769026	26	2.0	26	88	0	79	24	28	20	26	1.99
15769599--15769651	26	2.0	26	92	0	88	24	30	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15768425--15770290	625	3.0	625	96	0	3384	28	22	21	27	1.99
15771922--15771974	26	2.0	26	85	7	72	30	24	16	28	1.97
15773394--15773844	159	2.8	157	77	8	464	19	26	30	22	1.98
15773818--15773870	26	2.0	26	85	7	72	26	26	18	28	1.98
15774066--15774649	158	3.7	158	73	6	338	19	27	29	23	1.98
15773947--15774649	317	2.2	317	79	6	741	19	27	30	23	1.98
15774625--15774675	26	2.0	26	88	7	77	29	21	19	29	1.98
15775410--15775869	159	2.9	156	75	5	415	18	26	31	23	1.97
15775370--15775869	157	3.2	157	74	6	479	19	27	30	22	1.98
15777025--15777082	26	2.2	26	84	6	82	25	20	20	32	1.97
15777398--15777447	25	2.0	26	88	4	75	28	26	18	28	1.98
15778626--15778678	26	2.0	26	92	0	88	28	24	18	28	1.98
15778652--15779016	159	2.3	159	75	8	364	20	26	30	23	1.98
15779126--15779178	26	2.0	26	86	13	74	30	22	16	30	1.96
15779492--15779541	26	1.9	26	91	0	82	28	32	14	26	1.94
15780379--15780431	26	2.0	26	88	0	79	28	26	18	26	1.98
15780413--15780788	159	2.4	158	77	7	391	20	26	30	22	1.98
15781394--15781445	26	2.0	26	88	0	77	25	21	21	32	1.98
15782613--15782665	26	2.0	26	89	7	81	32	22	16	28	1.96
15784010--15784117	26	4.2	26	86	2	146	27	24	20	27	1.99
15785286--15785338	26	2.0	26	92	7	90	28	20	20	30	1.98
15785274--15785682	184	2.2	184	81	3	482	22	25	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15785472--15785522	26	2.0	26	84	7	68	27	25	13	33	1.94
15785507--15785932	158	2.7	158	74	7	398	19	25	31	24	1.98
15786215--15786267	26	2.0	26	96	0	97	26	28	20	24	1.99
15786912--15786964	26	2.0	26	92	0	88	32	28	15	24	1.95
15787375--15787407	11	3.0	11	95	0	57	21	27	33	18	1.96
15788695--15788749	26	2.2	25	90	9	85	34	25	14	25	1.94
15789197--15789249	26	2.0	26	85	0	70	32	22	15	30	1.94
15790216--15790268	26	2.0	26	85	0	70	28	24	20	26	1.99
15791331--15791383	26	2.0	26	86	13	74	30	24	16	28	1.97
15792400--15792449	26	1.9	26	92	8	84	24	24	22	30	1.99
15792426--15792839	184	2.2	184	81	4	512	19	27	28	24	1.99
15792950--15793002	26	2.0	26	92	0	88	28	28	18	24	1.98
15794388--15794440	26	2.0	26	85	7	72	24	24	20	30	1.99
15795111--15795163	26	2.0	26	88	0	79	30	28	16	24	1.97
15795611--15795663	26	2.0	26	89	7	81	28	24	18	28	1.98
15797168--15797220	26	2.0	26	88	0	79	28	26	18	26	1.98
15798377--15798429	26	2.0	26	85	7	72	26	22	18	32	1.97
15798403--15800700	693	3.3	688	81	5	2384	20	27	28	22	1.99
15800135--15800187	26	2.0	26	85	0	70	32	26	16	24	1.97
15800240--15800825	159	3.7	156	77	5	556	19	28	30	22	1.98
15800200--15800826	158	4.0	157	76	5	564	19	28	30	21	1.98
15800798--15800876	26	3.0	26	94	0	140	26	20	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15801009--15801061	26	2.0	26	89	7	81	28	22	18	30	1.98
15803283--15803335	26	2.0	26	92	0	88	28	28	18	24	1.98
15803592--15803644	26	2.0	26	92	7	90	26	24	20	28	1.99
15803960--15804012	26	2.0	26	82	7	63	24	24	22	28	2.00
15804839--15804891	26	2.0	26	92	0	88	24	28	22	24	2.00
15805341--15805393	26	2.0	26	88	0	79	26	22	18	32	1.97
15805266--15805737	185	2.6	184	80	4	529	21	28	25	24	1.99
15805525--15805577	26	2.0	26	88	0	79	30	28	16	24	1.97
15805869--15805921	26	2.0	26	96	0	97	30	28	16	24	1.97
15805461--15806082	343	1.8	343	86	2	919	21	27	26	24	1.99
15805430--15806170	343	2.2	342	81	5	870	21	27	27	23	1.99
15806221--15806747	158	3.3	156	74	6	443	21	25	27	25	1.99
15806843--15806875	11	3.0	11	83	16	50	27	36	27	9	1.87
15806992--15807041	26	1.9	26	83	0	64	28	26	18	28	1.98
15807923--15807975	26	2.0	26	88	0	79	28	26	18	26	1.98
15807949--15808449	158	3.2	157	77	7	485	19	26	30	23	1.98
15808423--15808474	26	2.0	26	88	7	79	25	25	21	28	1.99
15808790--15808868	26	3.0	26	94	0	131	27	26	18	26	1.98
15808842--15809344	159	3.2	160	77	5	421	18	28	30	22	1.97
15809317--15809369	26	2.0	26	89	7	81	28	24	18	28	1.98
15807923--15810239	894	2.6	882	81	6	2490	19	26	29	23	1.98
15810185--15810237	26	2.0	26	89	7	81	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15817202--15817254	26	2.0	26	85	7	72	28	26	18	26	1.98
15817044--15817413	184	2.0	184	84	4	478	20	25	28	24	1.99
15818259--15818337	26	3.0	26	88	0	113	29	25	17	27	1.98
15819130--15819180	26	2.0	26	96	0	93	23	31	19	25	1.98
15819619--15819671	26	2.0	26	89	7	81	26	20	20	32	1.98
15820150--15820202	26	2.0	26	88	0	79	26	24	20	28	1.99
15820495--15820545	26	2.0	26	84	7	68	31	21	17	29	1.96
15821207--15821262	26	2.2	26	90	0	85	28	23	19	28	1.98
15822287--15822335	25	1.9	26	87	4	73	24	28	18	28	1.98
15822312--15822813	159	3.2	159	78	7	511	20	27	29	22	1.98
15822785--15822837	26	2.0	26	89	7	81	28	24	18	28	1.98
15823577--15823996	170	2.5	170	81	5	463	20	28	29	21	1.98
15824661--15824713	26	2.0	26	88	0	79	28	26	18	26	1.98
15824845--15824896	26	2.0	26	88	7	79	32	25	13	28	1.93
15824578--15824916	183	1.8	184	81	3	423	21	25	26	25	2.00
15825199--15825251	26	2.0	26	92	7	90	30	24	16	28	1.97
15825961--15826419	159	2.9	158	80	2	456	20	27	29	23	1.99
15826055--15826418	158	2.3	158	81	3	417	21	25	28	25	1.99
15826392--15826444	26	2.0	26	89	7	81	26	22	20	30	1.98
15825864--15827448	517	3.1	512	77	7	1342	20	26	28	24	1.99
15828094--15828143	26	1.9	26	88	8	75	28	24	18	30	1.97
15828781--15828833	26	2.0	26	92	0	88	28	28	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15828807--15829308	159	3.2	157	75	8	489	20	28	28	21	1.98
15829282--15829334	26	2.0	26	92	7	90	26	22	20	30	1.98
15829657--15829713	26	2.2	26	93	0	96	31	24	15	28	1.96
15836942--15837303	159	2.3	157	84	4	469	20	25	29	25	1.99
15837276--15837328	26	2.0	26	89	7	81	30	20	18	30	1.97
15837656--15837708	26	2.0	26	85	0	70	30	30	16	22	1.96
15837722--15838114	162	2.5	158	84	3	518	19	28	31	20	1.97
15838318--15838370	26	2.0	26	85	7	72	26	22	18	32	1.97
15838966--15839543	158	3.6	157	78	5	597	18	28	29	23	1.98
15839517--15839569	26	2.0	26	89	7	81	32	24	16	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138