genome.fa.s124.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  49  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10476863--10476892	11	2.9	10	95	5	51	86	13	0	0	0.57
10478399--10478447	17	2.9	17	82	8	64	73	0	2	24	0.94
10485501--10485532	12	2.7	12	90	0	55	65	0	0	34	0.93
10486167--10486280	43	2.7	43	80	0	129	41	16	14	27	1.88
10486227--10486436	42	5.1	42	75	11	134	46	18	10	25	1.80
10486251--10486454	42	5.0	42	74	9	156	48	17	8	25	1.76
10486360--10486472	42	2.7	42	82	6	124	49	16	9	23	1.76
10486854--10486912	22	2.6	21	79	12	64	38	15	6	38	1.74
10486924--10487019	21	4.4	21	77	13	97	39	16	11	32	1.84
10486988--10487048	33	1.9	32	86	6	88	45	13	8	32	1.72
10487039--10487284	46	5.4	46	85	4	300	36	12	10	40	1.78
10487223--10487355	71	1.9	71	93	0	230	36	14	10	39	1.80
10487154--10487393	117	2.1	117	85	1	320	37	12	11	38	1.79
10487271--10487393	46	2.7	46	87	5	160	38	13	11	36	1.81
10487108--10487403	163	1.8	163	88	0	439	36	13	11	38	1.81
10488643--10488697	7	8.3	7	79	18	55	12	7	0	80	0.91
10488640--10488693	24	2.2	24	87	6	74	11	5	0	83	0.80
10488632--10488712	32	2.5	32	84	8	110	8	11	0	80	0.91
10488628--10488715	7	10.4	9	71	24	52	10	12	0	77	1.00
10488640--10488711	25	3.0	24	83	6	83	9	9	0	80	0.91
10489067--10489105	15	2.6	14	84	11	51	0	12	7	79	0.93
10489072--10489106	15	2.2	16	95	5	63	0	14	5	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10492566--10492705	56	2.5	56	86	4	187	25	13	11	50	1.75
10492544--10492706	56	3.0	55	80	8	185	23	12	9	54	1.67
10494459--10494553	30	3.2	30	75	11	104	48	8	2	41	1.45
10494927--10494962	10	3.6	10	84	0	54	38	0	0	61	0.96
10494929--10494972	20	2.2	20	91	0	70	34	2	0	63	1.07
10498475--10498555	41	2.0	41	100	0	162	27	20	19	32	1.97
10499316--10499357	14	3.1	14	75	3	50	52	0	0	47	1.00
10500540--10500584	8	5.9	8	89	10	76	77	0	8	13	0.98
10500537--10500584	15	3.2	15	96	0	87	77	0	8	14	0.99
10507678--10507711	5	7.0	5	90	6	52	0	0	14	85	0.60
10507678--10507711	14	2.4	14	90	5	50	0	0	14	85	0.60
10508958--10508998	17	2.4	18	92	8	68	68	9	0	21	1.18
10509680--10509728	24	2.0	25	88	8	73	34	4	8	53	1.50
10509751--10509844	27	3.5	26	68	16	66	23	3	8	64	1.36
10509919--10509958	18	2.2	18	86	0	53	32	2	10	55	1.47
10515493--10515811	48	6.7	48	89	2	473	28	12	22	35	1.92
10515493--10516023	96	5.4	96	80	9	615	27	12	23	35	1.91
10515490--10516023	142	3.6	143	83	10	680	27	12	23	35	1.92
10515820--10516014	48	4.1	46	87	5	282	26	10	26	36	1.89
10515708--10515918	110	1.9	112	90	3	338	27	12	25	35	1.92
10515662--10515969	158	1.9	158	91	1	501	27	12	25	34	1.92
10516204--10516232	3	9.7	3	100	0	58	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10517192--10517221	13	2.3	13	94	0	51	30	40	23	6	1.80
10517614--10517658	18	2.5	18	75	10	56	64	0	6	28	1.19
10517826--10517857	12	2.7	12	95	0	55	62	0	0	37	0.95
10518487--10518735	43	6.0	43	78	6	147	45	18	10	24	1.81
10518544--10518748	41	5.0	40	75	12	148	47	18	9	24	1.78
10518573--10518747	81	2.1	83	84	8	223	50	18	8	22	1.73
10518573--10518797	41	5.4	42	79	11	187	49	18	9	22	1.77
10519181--10519239	22	2.6	21	79	12	64	38	15	6	38	1.74
10519251--10519347	21	4.4	22	78	12	110	40	15	11	32	1.83
10519368--10519612	46	5.3	46	86	2	305	35	11	11	41	1.77
10519436--10519685	25	10.7	24	69	15	103	36	13	12	38	1.81
10519465--10519707	117	2.1	115	81	4	301	36	13	11	39	1.80
10519551--10519683	71	1.9	70	93	0	221	36	14	10	39	1.80
10519599--10519721	46	2.7	46	87	5	160	38	13	11	36	1.81
10519370--10519658	138	2.1	136	80	5	305	35	12	11	40	1.79
10519505--10519721	117	1.9	117	88	1	328	36	13	10	39	1.79
10519436--10519731	163	1.8	163	87	2	425	36	13	11	38	1.81
10520960--10521006	10	4.5	10	78	19	51	10	8	0	80	0.89
10520959--10521011	22	2.4	22	81	6	63	11	7	0	81	0.88
10520973--10521017	14	3.1	14	81	12	56	15	6	0	77	0.96
10521386--10521430	20	2.4	19	82	13	58	0	13	4	82	0.82
10524870--10525031	55	2.9	56	86	4	213	22	12	10	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10525402--10525434	10	3.3	10	87	12	50	12	0	0	87	0.53
10525400--10525433	16	2.1	17	94	5	61	14	0	0	85	0.60
10525602--10525635	14	2.3	15	90	5	52	14	2	0	82	0.79
10536978--10537007	15	2.0	15	100	0	60	26	26	0	46	1.53
10541717--10541742	2	13.0	2	100	0	52	50	0	0	50	1.00
10542069--10542110	18	2.4	18	88	4	59	21	0	9	69	1.17
10542078--10542110	9	3.8	9	96	4	59	21	0	9	69	1.15
10542674--10542723	9	5.4	9	85	2	64	32	0	12	56	1.36
10542674--10542713	18	2.2	19	95	4	73	35	0	10	55	1.34
10542815--10542844	12	2.5	12	94	0	51	43	0	3	53	1.17
10544845--10545047	101	2.0	101	98	0	388	34	8	16	39	1.79
10545941--10545966	3	8.7	3	100	0	52	34	0	0	65	0.93
10547023--10547060	13	2.8	13	84	15	51	76	2	0	21	0.91
10547401--10547468	3	22.7	3	100	0	136	66	0	0	33	0.92
10557289--10557327	19	2.1	19	85	9	53	48	10	5	35	1.59
10560037--10560071	18	1.9	18	88	0	52	37	5	8	48	1.58
10563025--10563086	32	1.9	33	90	3	99	61	4	0	33	1.17
10563028--10563108	32	2.5	32	80	11	94	61	4	0	33	1.17
10563675--10563731	24	2.2	26	82	14	66	47	3	0	49	1.18
10563675--10563731	27	2.2	24	81	9	60	47	3	0	49	1.18
10570426--10570468	22	2.0	22	86	9	61	2	39	2	55	1.25
10571040--10571064	13	1.9	13	100	0	50	16	4	16	64	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10572098--10572199	50	2.0	50	96	0	186	32	11	17	38	1.86
10579547--10579571	2	12.5	2	100	0	50	52	0	0	48	1.00
10579571--10579609	2	19.5	2	94	0	69	53	0	46	0	1.00
10579573--10579616	8	5.6	8	94	2	54	56	0	43	0	0.99
10579750--10579783	18	1.9	18	88	5	52	38	2	2	55	1.30
10580392--10580441	22	2.1	24	85	10	68	20	0	16	64	1.30
10584980--10585030	22	2.3	22	83	16	61	64	5	3	25	1.33
10584978--10585031	23	2.4	22	76	14	56	66	5	3	24	1.29
10585379--10585457	31	2.5	31	87	2	104	31	8	11	48	1.70
10586842--10586918	35	2.2	35	88	4	111	32	10	20	36	1.87
10588313--10588357	21	2.1	21	84	8	56	66	8	0	24	1.20
10589988--10590053	12	5.3	12	82	10	64	48	30	3	18	1.63
10589979--10590053	25	3.0	25	78	16	84	48	28	4	20	1.67
10589982--10590045	13	5.1	13	76	16	64	48	28	4	18	1.68
10591242--10591513	62	4.3	62	72	14	198	41	9	15	34	1.78
10591242--10591444	68	3.1	64	75	12	200	42	7	14	34	1.75
10591242--10591479	130	1.8	129	81	7	295	42	9	13	34	1.78
10594109--10594151	21	2.0	21	90	0	68	25	9	23	41	1.84
10597542--10597823	147	1.9	147	85	4	390	32	9	15	42	1.79
10599275--10599349	34	2.2	34	85	7	98	41	16	12	30	1.84
10599297--10599361	34	1.9	34	93	6	114	35	13	13	36	1.85
10604886--10604915	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10616580--10616626	24	2.0	24	87	8	69	8	6	19	65	1.41
10629027--10629059	15	2.1	16	88	5	50	42	0	0	57	0.98
10628984--10629279	88	3.3	89	74	7	253	41	6	8	43	1.61
10629756--10629821	24	2.8	24	80	17	91	51	3	3	42	1.32
10630142--10630193	26	2.0	26	92	0	86	42	19	7	30	1.79
10634186--10634239	8	7.0	8	74	16	51	42	3	0	53	1.18
10634184--10634214	2	15.5	2	93	0	53	45	0	0	54	0.99
10635249--10635288	11	3.8	11	83	12	57	72	10	2	15	1.21
10635248--10635292	20	2.2	20	96	0	81	71	11	2	15	1.24
10635603--10635640	18	2.1	18	90	9	60	84	7	7	0	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138