genome.fa.s124.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  57  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11716473--11716524	15	3.3	17	74	17	58	38	0	0	61	0.96
11717471--11717534	32	2.0	32	93	0	110	39	20	17	23	1.92
11724952--11725007	27	2.0	28	86	3	78	14	1	12	71	1.23
11728561--11728600	7	5.6	7	91	5	62	75	0	12	12	1.06
11728554--11728600	21	2.3	20	85	10	60	74	0	12	12	1.07
11729996--11730109	41	2.6	43	82	14	137	28	13	15	42	1.85
11730271--11730369	41	2.4	41	84	5	119	23	14	23	39	1.91
11730516--11730634	44	2.7	43	80	6	141	31	18	15	34	1.92
11730516--11730651	44	3.1	42	78	10	132	31	18	16	33	1.94
11730887--11730920	18	1.9	18	88	5	52	23	0	14	61	1.33
11731417--11731458	11	3.7	11	81	15	50	26	4	0	69	1.08
11731493--11731538	23	2.0	23	87	8	67	52	0	4	43	1.21
11733745--11733787	19	2.3	17	84	15	50	62	2	11	23	1.40
11734880--11734961	38	2.2	38	86	4	112	17	0	40	42	1.49
11734866--11734957	6	14.7	6	70	17	53	18	1	39	41	1.58
11734912--11734961	13	3.9	13	82	12	68	16	0	38	46	1.47
11734912--11734946	7	5.1	7	89	6	54	17	0	40	42	1.49
11735083--11735125	10	4.2	10	88	5	59	2	0	44	53	1.13
11735083--11735123	21	2.0	21	90	0	64	2	0	46	51	1.14
11735288--11735333	21	2.1	22	92	4	76	19	4	39	36	1.72
11735443--11735587	7	24.2	6	64	31	55	16	0	35	46	1.52
11735441--11735528	29	3.1	28	81	10	99	13	1	36	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11735460--11735501	18	2.3	18	92	8	68	16	0	38	45	1.48
11735506--11735586	20	4.3	18	80	11	90	18	0	34	46	1.49
11735675--11735717	18	2.4	17	76	7	50	18	2	32	46	1.62
11735796--11735852	19	2.9	20	84	5	80	22	5	35	36	1.77
11737241--11737918	286	2.4	285	79	6	674	42	13	12	31	1.81
11737241--11738027	143	5.5	141	75	10	557	42	13	12	31	1.82
11737105--11738049	143	6.6	143	74	7	553	41	13	12	32	1.82
11738476--11738514	17	2.2	18	90	4	62	48	0	0	51	1.00
11738483--11738525	17	2.6	17	81	3	52	48	0	0	51	1.00
11738741--11738824	43	2.0	43	87	0	123	40	4	3	51	1.40
11760545--11760770	112	2.0	112	96	0	416	35	8	18	37	1.82
11763348--11763393	21	2.2	21	88	0	65	45	6	23	23	1.76
11768070--11768110	20	2.0	20	95	0	73	43	4	4	46	1.46
11768078--11768120	10	4.3	10	79	8	52	46	2	2	48	1.27
11768070--11768121	20	2.6	20	87	0	59	44	3	3	48	1.39
11768218--11768308	19	4.8	17	74	15	65	59	12	2	26	1.44
11768218--11768309	9	9.7	9	73	15	51	59	11	2	26	1.44
11768208--11768313	29	3.6	30	76	12	105	57	11	1	29	1.44
11771343--11771430	43	2.0	46	82	10	112	45	0	1	53	1.07
11775482--11775548	25	2.8	24	77	8	73	52	0	0	47	1.00
11775492--11775532	17	2.3	18	80	16	50	43	0	0	56	0.99
11775988--11776036	23	2.1	23	81	7	55	63	6	2	28	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11779210--11779236	2	13.5	2	100	0	54	48	0	51	0	1.00
11779258--11779289	15	2.1	15	100	0	64	53	12	34	0	1.39
11780829--11780920	46	2.0	46	83	8	116	28	7	20	43	1.79
11785688--11785716	9	3.3	9	90	9	51	89	0	0	10	0.48
11786982--11787261	86	3.3	86	82	3	339	26	19	15	38	1.91
11787832--11788151	114	2.8	114	83	1	329	25	26	13	34	1.93
11788773--11788806	15	2.4	14	85	9	50	14	0	5	79	0.91
11808721--11808764	21	2.1	21	83	8	54	13	13	2	70	1.26
11810150--11810197	25	1.9	25	83	8	62	31	10	10	47	1.71
11816721--11816867	52	2.8	51	85	4	179	27	23	7	40	1.81
11816902--11816965	11	5.8	11	92	0	110	50	28	0	21	1.49
11816902--11816966	22	3.0	22	100	0	130	49	27	0	23	1.50
11817208--11817285	25	3.1	25	81	0	93	20	34	6	38	1.78
11817840--11817996	52	3.0	52	84	5	192	26	22	8	42	1.83
11823750--11823839	29	3.2	29	63	23	75	41	8	11	38	1.72
11823731--11823841	54	2.1	54	98	0	213	39	9	11	39	1.73
11823899--11823944	18	2.6	18	82	0	56	39	10	6	43	1.66
11826553--11826577	2	12.5	2	100	0	50	48	0	0	52	1.00
11828896--11829019	62	2.0	62	82	7	153	20	16	20	42	1.89
11828867--11829019	63	2.4	63	78	9	161	19	16	20	43	1.88
11831739--11831777	14	2.8	14	88	7	53	74	5	0	20	1.01
11833443--11833704	81	3.2	80	85	4	321	35	3	25	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11841871--11841915	18	2.5	17	85	10	54	77	0	11	11	0.99
11842447--11842488	18	2.3	18	91	0	66	50	4	7	38	1.51
11842483--11842545	21	3.0	20	77	11	65	49	3	6	41	1.44
11842653--11842901	45	5.6	45	78	8	174	48	11	4	35	1.59
11842628--11842890	89	3.0	89	78	5	239	48	10	5	35	1.60
11842695--11842901	45	4.7	44	79	4	175	49	11	3	35	1.56
11842795--11842875	21	3.8	21	72	13	67	49	12	3	34	1.58
11842869--11842929	24	2.6	23	71	5	59	55	6	1	36	1.36
11843074--11843146	38	2.0	36	86	5	101	49	17	4	28	1.65
11847371--11847410	16	2.4	17	88	12	57	75	2	7	15	1.14
11849007--11849062	23	2.4	23	100	0	112	23	17	28	30	1.97
11865553--11865621	34	2.0	34	94	0	120	24	20	20	34	1.96
11869003--11869035	17	2.0	17	88	5	50	72	0	0	27	0.85
11879218--11879538	150	2.1	148	78	4	322	26	23	27	23	2.00
11879759--11879789	12	2.6	12	89	0	53	29	32	35	3	1.73
11879586--11879915	183	1.8	183	82	2	430	21	27	26	23	1.99
11884507--11884820	149	2.1	149	83	1	378	26	25	27	20	1.99
11885155--11885207	25	2.1	26	89	3	81	26	22	20	30	1.98
11885333--11885637	158	1.9	158	80	4	346	20	26	26	25	1.99
11899825--11899955	68	1.9	68	82	3	165	22	30	28	18	1.97
11899401--11900090	293	2.4	293	80	2	744	21	28	28	20	1.98
11899927--11900124	45	4.4	46	72	10	142	21	27	29	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11900042--11900404	161	2.3	162	79	3	392	21	25	30	22	1.98
11900443--11900467	13	1.9	13	100	0	50	24	36	16	24	1.94
11901032--11901345	150	2.1	148	82	3	378	26	23	28	20	1.99
11901675--11901973	157	1.9	157	80	2	350	22	25	27	24	2.00
11901670--11902021	157	2.2	156	78	5	341	21	25	26	26	2.00
11909575--11909749	90	1.9	90	81	4	210	21	30	27	20	1.98
11909759--11909863	45	2.3	45	81	0	120	20	23	36	20	1.95
11910833--11910891	26	2.2	27	81	3	66	61	1	6	30	1.32
11911524--11911951	158	2.7	157	79	6	409	21	26	24	27	1.99
11913480--11913590	45	2.5	45	77	5	116	21	29	33	15	1.94
11914345--11914401	26	2.2	26	84	6	71	56	8	10	24	1.61
11921457--11921581	45	2.8	45	96	2	225	27	32	24	16	1.96
11921552--11921718	90	1.9	90	83	2	219	21	29	28	20	1.98
11921433--11921688	45	5.7	45	78	3	183	24	30	26	18	1.98
11921640--11922105	162	2.9	160	82	3	479	20	28	31	19	1.97
11921886--11922017	45	2.9	45	77	2	122	21	29	33	15	1.94
11923887--11923933	22	2.1	22	96	0	85	17	19	46	17	1.84
11923891--11923939	22	2.2	21	89	10	80	14	20	44	20	1.86
11925124--11925236	45	2.5	45	80	0	136	25	25	26	22	2.00
11925128--11925364	45	5.3	44	71	6	125	24	29	24	21	1.99
11925298--11925383	45	1.9	45	80	4	102	22	32	23	22	1.98
11925425--11925528	45	2.3	45	81	0	118	20	25	32	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11933331--11933434	45	2.3	45	83	3	129	20	23	34	22	1.97
11933331--11933447	45	2.6	45	82	2	128	21	26	31	20	1.98
11933632--11933762	68	1.9	68	84	3	174	22	33	27	16	1.95
11939490--11939586	45	2.2	45	78	0	104	23	28	27	19	1.98
11940597--11940865	149	1.8	149	86	3	389	24	26	28	20	1.99
11951805--11951992	72	2.6	71	71	7	166	22	23	30	22	1.99
11959621--11959657	7	5.3	7	93	0	65	16	16	40	27	1.89
11992173--11992204	16	2.0	16	100	0	64	37	0	18	43	1.51
11992176--11992212	16	2.5	15	87	12	51	37	0	16	45	1.47
12003389--12003421	16	2.0	17	88	5	50	33	9	3	54	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138