genome.fa.s124.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  46  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9936883--9936969	36	2.4	36	88	0	120	22	21	5	49	1.71
9940093--9940125	15	2.3	15	94	5	59	45	15	0	39	1.46
9940686--9940775	33	2.8	33	86	1	110	32	16	15	35	1.91
9940798--9940869	33	2.2	32	80	4	83	30	20	19	29	1.97
9940849--9940950	22	4.6	22	72	13	66	33	23	20	22	1.97
9941115--9941492	33	11.7	32	74	9	277	28	17	16	37	1.92
9941115--9941492	65	5.8	64	77	10	288	28	17	16	37	1.92
9941181--9941236	29	1.9	29	92	0	94	21	21	12	44	1.85
9941111--9941270	62	2.5	63	80	8	171	30	17	14	38	1.89
9941113--9941473	95	3.7	94	78	9	286	29	17	16	36	1.92
9941737--9941845	24	4.5	23	90	5	139	35	9	13	41	1.77
9941760--9941845	24	3.6	24	96	0	163	38	8	12	40	1.73
9942110--9942178	22	3.2	21	80	8	75	30	17	11	40	1.85
9942168--9942349	87	2.1	87	81	10	203	25	18	16	39	1.92
9942244--9942481	110	2.2	109	84	5	293	26	20	16	37	1.93
9942341--9942613	132	2.1	132	82	5	329	25	20	16	37	1.93
9942463--9942811	110	3.2	110	86	1	468	23	18	18	39	1.92
9942248--9942723	242	2.0	241	84	3	618	24	19	16	38	1.92
9942705--9942901	88	2.2	88	83	5	229	21	17	19	41	1.90
9942607--9942998	198	2.0	198	82	1	480	21	16	19	42	1.89
9942881--9942923	22	2.0	22	85	0	59	27	23	20	27	1.99
9942793--9943018	110	2.1	110	85	1	310	21	16	19	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9942903--9943413	131	3.9	132	81	3	530	23	17	18	41	1.90
9942914--9943415	264	1.9	263	81	4	618	23	17	17	42	1.89
9943384--9943433	22	2.3	22	85	0	64	34	24	14	28	1.93
9942942--9943479	264	2.0	263	79	8	576	24	17	16	40	1.90
9943565--9943729	73	2.3	73	79	1	170	18	18	18	44	1.87
9951950--9952038	43	2.0	45	93	4	155	49	11	19	20	1.78
9952029--9952060	14	2.3	14	94	0	55	87	3	0	9	0.64
9952774--9953257	119	4.1	119	81	2	522	19	20	14	46	1.84
9953098--9953397	165	1.8	165	84	2	415	17	19	15	47	1.83
9953263--9953502	119	2.0	119	87	1	347	18	19	15	47	1.83
9953008--9953520	284	1.8	284	81	5	651	18	19	15	46	1.84
9953290--9953542	119	2.1	120	83	2	321	19	20	15	44	1.87
9953674--9953749	26	2.9	26	80	0	89	22	28	22	26	1.99
9953673--9953769	26	3.7	26	76	0	86	22	25	23	27	2.00
9953802--9953935	3	46.0	3	75	14	86	25	2	3	68	1.17
9953887--9953934	11	4.4	11	80	17	55	29	2	2	66	1.14
9954955--9955040	32	2.7	33	74	11	83	59	6	3	30	1.41
9955019--9955059	19	2.3	18	87	8	57	56	9	4	29	1.53
9976139--9976164	12	2.2	12	100	0	52	65	0	0	34	0.93
9976571--9976618	11	4.1	11	81	7	51	66	12	0	20	1.24
9977178--9977219	13	3.2	13	86	10	50	35	21	9	33	1.86
9977257--9977308	15	3.3	15	75	19	61	9	11	1	76	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9978860--9978904	22	2.0	23	87	8	67	20	6	6	66	1.38
9985671--9985716	21	2.1	22	88	4	67	21	19	13	45	1.84
9992240--9992565	181	1.8	180	92	2	555	42	11	9	37	1.72
9993047--9993220	87	2.0	85	93	2	294	43	14	13	28	1.84
9995599--9995633	15	2.3	16	90	9	56	51	5	22	20	1.68
9995736--9995780	21	2.1	21	84	8	56	17	15	26	40	1.90
9998973--9999013	3	13.7	3	94	0	73	70	0	0	29	0.87
9999026--9999091	26	2.5	26	85	4	80	30	22	30	16	1.96
9999635--9999850	55	3.7	55	71	15	166	47	14	18	18	1.82
9999282--9999930	119	5.4	119	78	7	582	44	15	21	18	1.86
9999380--9999930	237	2.3	238	81	4	635	46	14	20	18	1.83
10008545--10008679	63	2.1	63	100	0	270	12	25	12	49	1.76
10011967--10012007	3	13.7	3	100	0	82	68	0	0	31	0.90
10016575--10016624	17	2.7	20	75	18	61	50	0	2	48	1.12
10016697--10016735	20	2.0	20	89	0	60	38	7	2	51	1.44
10016692--10016789	44	2.2	44	80	12	110	44	4	2	48	1.33
10016749--10016798	17	3.1	16	83	8	66	42	2	0	56	1.11
10016951--10017039	42	2.2	39	76	18	92	47	2	2	48	1.26
10017031--10017091	24	2.6	23	75	15	61	49	1	3	45	1.28
10017206--10017261	18	3.4	17	71	19	55	48	10	7	33	1.65
10017223--10017275	14	3.5	14	72	18	52	47	5	5	41	1.51
10017206--10017276	32	2.2	32	97	0	133	46	9	7	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10019068--10019107	20	2.0	20	100	0	80	20	15	15	50	1.79
10022688--10022747	30	2.0	29	84	9	77	65	1	1	31	1.13
10022710--10022755	19	2.4	19	85	0	56	69	0	0	30	0.89
10022966--10023014	20	2.5	20	80	6	55	30	10	12	46	1.74
10023416--10023447	3	10.7	3	100	0	64	34	0	0	65	0.93
10025662--10025702	21	2.0	21	90	0	64	19	34	17	29	1.94
10026043--10026080	18	2.1	18	100	0	76	44	26	5	23	1.74
10043736--10043770	15	2.4	15	90	4	54	80	14	0	5	0.89
10045324--10045384	30	2.0	30	87	0	86	42	27	0	29	1.56
10045344--10045411	31	2.2	29	82	7	73	42	25	2	29	1.69
10054408--10054472	18	3.6	18	85	0	67	26	23	12	38	1.90
10054752--10055015	129	2.0	129	86	1	359	37	19	10	32	1.85
10056468--10056527	30	2.0	31	83	9	79	18	20	23	38	1.93
10056860--10056901	17	2.5	17	82	17	52	80	2	2	14	0.90
10056917--10056948	16	2.1	16	94	5	57	71	0	12	15	1.14
10057268--10057329	14	4.4	14	79	4	61	53	27	1	17	1.53
10057268--10057350	43	1.9	44	83	11	109	49	30	2	18	1.60
10057434--10057565	8	16.6	8	68	13	67	47	25	0	27	1.52
10057528--10057564	18	2.1	17	95	5	65	56	21	0	21	1.42
10057512--10057565	26	2.2	24	86	6	72	53	27	0	18	1.45
10059728--10059813	33	2.6	33	80	7	93	33	19	15	31	1.93
10059794--10059865	33	2.2	33	84	0	90	25	9	20	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10059819--10059886	33	2.1	33	82	0	82	27	8	16	47	1.76
10059846--10059982	71	1.9	72	83	7	181	29	8	19	42	1.81
10059873--10060019	35	4.2	35	78	7	118	29	8	18	42	1.80
10061030--10061070	3	13.7	3	94	0	73	29	0	2	68	1.03
10062142--10062198	19	3.0	18	80	12	69	15	1	3	78	0.96
10062404--10062592	52	3.7	52	87	2	265	49	6	6	37	1.55
10062601--10062625	6	4.2	6	100	0	50	84	0	0	16	0.63
10063665--10063694	2	15.5	2	93	6	53	50	0	0	50	1.00
10065302--10065330	2	14.5	2	100	0	58	48	0	0	51	1.00
10066657--10066803	16	9.4	16	69	12	83	17	2	31	48	1.61
10067900--10067935	12	3.1	11	88	11	54	0	0	13	86	0.58
10067897--10067935	14	2.7	15	88	4	62	0	0	12	87	0.55
10067897--10067933	17	2.2	17	90	9	58	0	0	10	89	0.49
10068610--10068642	2	17.0	2	93	6	59	48	0	0	51	1.00
10068610--10068639	15	2.0	15	100	0	60	46	0	0	53	1.00
10071470--10071511	17	2.6	16	81	7	57	52	2	7	38	1.42
10073738--10073768	6	5.2	6	100	0	62	32	0	67	0	0.91
10074910--10074934	2	12.5	2	100	0	50	52	0	0	48	1.00
10079034--10079102	31	2.3	30	80	5	84	36	8	5	49	1.58
10088731--10088763	2	16.5	2	100	0	66	48	0	0	51	1.00
10090042--10090183	43	3.3	44	84	5	166	23	7	10	57	1.58
10090040--10090249	85	2.5	85	79	9	225	25	7	12	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10090042--10090301	42	6.2	42	82	4	256	25	8	12	54	1.64
10090828--10090891	32	2.0	32	90	0	101	56	6	7	29	1.52
10091453--10091546	42	2.2	42	94	0	161	42	7	31	18	1.78
10097631--10097670	20	2.0	20	85	9	55	57	15	5	22	1.57
10104151--10104208	22	2.6	23	75	2	64	65	15	3	15	1.40
10108439--10108484	23	1.9	25	86	8	69	54	17	10	17	1.70
10113558--10113598	17	2.5	17	88	7	59	4	26	0	68	1.10
10116332--10116412	41	2.0	41	85	4	110	54	12	3	29	1.55
10117628--10117666	11	3.5	11	86	6	51	74	5	0	20	1.01
10118060--10118121	18	3.4	19	78	10	76	46	16	8	29	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138