genome.fa.s124.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  17  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4802730--4802795	21	3.2	21	76	6	64	45	15	6	33	1.70
4814189--4814502	174	1.8	174	88	5	483	36	12	9	41	1.76
4814443--4814503	25	2.4	25	81	8	61	32	11	11	44	1.76
4814641--4814689	25	2.0	25	88	8	73	44	6	0	48	1.27
4814350--4814718	195	1.9	195	83	5	478	36	10	7	46	1.66
4815678--4815715	12	3.0	13	84	7	51	78	0	2	18	0.86
4819015--4819050	2	18.0	2	100	0	72	50	0	0	50	1.00
4819717--4819750	17	1.9	17	88	5	50	50	5	8	35	1.58
4820172--4820210	20	1.9	19	85	10	51	33	10	12	43	1.77
4821983--4822033	19	2.7	20	77	17	56	62	3	1	31	1.24
4830973--4831004	16	1.9	17	93	6	57	43	0	3	53	1.16
4831668--4831763	26	3.7	26	74	18	76	52	1	1	45	1.14
4832728--4832819	30	3.0	29	83	12	112	39	5	1	54	1.31
4832806--4832844	17	2.2	18	86	4	53	53	2	0	43	1.14
4832889--4832935	23	2.0	23	83	4	58	59	0	0	40	0.97
4833492--4833525	7	5.1	7	86	13	54	58	0	0	41	0.98
4850577--4850616	21	1.9	21	89	0	62	32	0	7	60	1.25
4852087--4852141	23	2.4	23	80	14	60	20	3	1	74	1.06
4855286--4855321	9	3.9	9	88	3	54	77	2	2	16	1.00
4855286--4855321	18	1.9	19	94	5	65	77	2	2	16	1.00
4855408--4855482	25	3.0	25	92	0	123	28	12	10	49	1.73
4860622--4860670	21	2.3	21	75	0	53	77	4	12	6	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4861282--4861335	20	2.7	19	86	11	72	85	1	12	0	0.69
4861283--4861335	18	2.9	18	88	0	70	84	1	13	0	0.69
4861824--4861874	17	3.1	16	86	13	68	86	0	5	7	0.71
4861829--4861887	25	2.3	25	88	2	82	84	0	5	10	0.76
4861830--4861878	16	3.0	16	93	3	80	87	0	2	10	0.62
4861829--4861877	1	49.0	1	79	0	53	89	0	2	8	0.55
4861829--4861878	9	5.9	9	81	13	70	88	0	2	10	0.61
4863361--4863596	42	5.7	41	79	4	197	33	18	10	37	1.85
4863361--4863595	83	2.8	81	78	9	224	33	18	10	37	1.85
4863646--4863727	30	2.5	33	81	11	91	32	20	13	32	1.91
4863673--4863779	50	2.1	51	82	6	128	30	24	10	34	1.89
4863773--4863844	30	2.3	31	81	11	85	30	20	15	33	1.94
4864046--4864083	18	2.1	19	90	5	60	34	21	10	34	1.87
4863994--4864107	31	3.7	31	79	2	113	38	18	11	31	1.86
4864054--4864120	30	2.2	31	81	7	75	32	16	16	34	1.91
4867838--4867887	19	2.5	20	90	3	75	28	10	8	54	1.62
4869297--4869406	44	2.5	43	88	2	166	40	12	22	24	1.89
4873646--4873685	21	2.0	20	90	5	62	40	5	0	55	1.22
4874304--4874349	19	2.4	19	85	7	58	26	6	0	67	1.15
4874530--4874576	21	2.4	19	80	16	51	29	0	6	63	1.19
4876774--4876846	37	2.0	37	83	5	94	42	0	1	56	1.08
4877360--4877384	1	25.0	1	100	0	50	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4879235--4879703	232	2.0	232	96	1	861	36	13	11	38	1.82
4880826--4880888	25	2.4	26	72	17	67	41	1	4	52	1.32
4880982--4881023	18	2.3	18	84	8	50	64	7	0	28	1.20
4880990--4881025	18	2.1	17	89	5	54	58	5	0	36	1.22
4881121--4881182	23	2.7	24	80	12	67	43	1	1	53	1.20
4888960--4889022	30	2.1	29	91	2	99	50	0	1	47	1.10
4888952--4889039	30	3.0	30	83	8	92	48	0	3	47	1.18
4896003--4896031	6	4.8	6	100	0	58	34	31	0	34	1.58
4900268--4900334	32	2.1	31	86	2	89	47	2	5	43	1.43
4900268--4900342	32	2.4	31	80	12	82	46	4	6	42	1.48
4900576--4900633	20	2.9	21	76	19	61	46	0	0	53	1.00
4901752--4901812	31	2.0	31	93	3	106	36	14	13	36	1.85
4902049--4902093	24	2.0	22	91	8	72	73	0	4	22	1.01
4905781--4905817	17	2.1	18	90	5	58	16	0	24	59	1.37
4907143--4907346	42	5.0	41	78	6	184	25	5	14	53	1.64
4907238--4907347	37	2.8	39	83	9	118	28	4	16	50	1.64
4907195--4907346	79	1.9	79	82	7	193	25	5	16	51	1.66
4908058--4908117	18	3.6	18	69	17	56	58	6	8	26	1.52
4908059--4908130	32	2.2	32	82	4	92	59	6	8	25	1.51
4908683--4908777	42	2.3	42	83	3	111	52	8	24	14	1.69
4908836--4908954	33	3.6	33	67	8	82	47	7	26	18	1.75
4910340--4910369	11	2.7	11	89	0	51	80	0	6	13	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4912679--4912733	23	2.4	23	87	0	92	63	23	5	7	1.41
4917611--4917649	12	3.2	12	85	0	51	2	41	2	53	1.28
4921257--4921315	25	2.4	25	94	0	109	33	15	18	32	1.92
4927269--4927294	2	13.0	2	100	0	52	50	0	0	50	1.00
4927650--4927691	18	2.3	19	84	12	52	45	2	2	50	1.27
4928851--4928881	16	1.9	16	100	0	62	64	6	0	29	1.18
4929324--4929390	32	2.1	32	82	0	80	25	20	7	46	1.77
4932773--4932866	9	10.1	9	72	6	62	62	3	1	32	1.18
4937241--4937581	183	1.9	184	82	6	431	37	12	6	43	1.68
4938715--4938780	13	5.3	12	73	12	53	3	4	9	83	0.89
4938692--4938783	36	2.5	36	79	11	89	4	6	9	79	1.05
4939353--4939432	9	8.7	9	73	10	54	61	2	1	35	1.18
4939346--4939388	19	2.3	19	84	8	52	67	4	0	27	1.10
4939383--4939430	8	5.4	9	85	9	64	56	0	2	41	1.11
4939383--4939430	17	2.7	18	84	9	64	56	0	2	41	1.11
4939419--4939478	28	2.2	28	82	8	79	70	5	0	25	1.08
4939350--4939478	29	4.6	27	71	12	91	63	3	0	31	1.18
4940479--4940505	6	4.5	6	100	0	54	14	18	0	66	1.25
4940627--4940685	22	2.8	21	77	10	66	49	3	1	45	1.28
4940634--4940685	22	2.4	22	83	6	70	50	1	1	46	1.23
4940751--4940790	15	2.6	16	80	11	57	35	0	2	62	1.09
4940778--4940803	11	2.4	11	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4940848--4940910	20	3.2	20	93	2	101	41	4	4	49	1.45
4940842--4940947	20	5.6	19	74	13	76	44	4	3	47	1.42
4946816--4946844	14	2.0	15	93	6	51	55	3	0	41	1.17
4950315--4950363	10	4.8	11	76	14	52	48	2	2	46	1.25
4950316--4950362	23	2.0	22	84	12	58	51	2	2	44	1.25
4950434--4950466	2	16.5	2	100	0	66	0	48	0	51	1.00
4954155--4954197	17	2.4	18	78	17	54	51	0	0	48	1.00
4954244--4954291	24	2.0	24	83	0	60	47	6	2	43	1.40
4955248--4955303	20	2.6	21	91	8	87	53	0	0	46	1.00
4959701--4959748	11	4.4	11	78	0	51	54	4	4	37	1.39
4959701--4959826	22	5.7	22	71	9	78	49	6	5	38	1.52
4960021--4960257	22	11.0	22	69	13	98	47	5	10	35	1.62
4961869--4961992	22	5.8	22	74	7	67	50	4	9	36	1.54
4961895--4962014	44	2.9	41	75	7	123	47	4	10	38	1.56
4961867--4962019	44	3.5	44	77	6	116	49	3	9	37	1.53
4962170--4962250	22	3.7	22	85	3	101	39	6	9	44	1.63
4962518--4962729	22	9.7	22	70	15	93	47	2	8	41	1.47
4962720--4962762	21	2.0	21	90	0	68	41	0	13	44	1.44
4962881--4962939	22	2.7	22	81	0	64	54	6	10	28	1.59
4963159--4963303	22	6.6	22	72	4	78	42	6	8	42	1.63
4963760--4963792	17	1.9	17	93	0	57	57	12	0	30	1.35
4963656--4963801	21	7.2	21	72	7	104	50	10	6	32	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4963778--4963939	80	2.0	80	85	7	220	45	6	4	43	1.50
4968037--4968080	22	2.0	22	90	0	70	63	0	0	36	0.95
4970765--4970804	21	1.9	21	89	0	62	52	2	5	40	1.37
4973037--4973076	17	2.3	18	91	4	64	70	0	0	30	0.88
4973761--4973785	5	5.0	5	100	0	50	20	0	0	80	0.72
4973925--4973968	23	1.9	23	85	0	61	29	2	0	68	1.02
4975869--4975924	23	2.6	21	78	15	60	19	3	7	69	1.27
4976430--4976461	2	16.0	2	100	0	64	50	0	0	50	1.00
4979779--4979909	66	2.0	66	89	0	199	26	9	19	43	1.82
4982740--4982783	23	1.9	23	90	0	70	56	6	6	29	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138