genome.fa.s124.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  24  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6223985--6224039	28	2.0	28	85	0	74	34	16	20	29	1.94
6228566--6228591	7	3.7	7	100	0	52	46	0	0	53	1.00
6229696--6229758	23	2.7	24	82	9	76	52	3	0	44	1.17
6229928--6229983	11	5.2	11	78	4	51	57	5	1	35	1.32
6229963--6229998	18	2.0	18	88	0	54	47	2	2	47	1.31
6229888--6230115	21	11.2	21	68	14	111	54	5	2	38	1.35
6230018--6230119	11	9.9	10	71	11	55	52	3	1	41	1.31
6230242--6230312	11	6.5	11	82	11	83	61	2	0	35	1.10
6230242--6230321	32	2.5	31	89	6	115	60	3	0	36	1.15
6230245--6230321	22	3.5	21	76	13	75	61	3	0	35	1.15
6230324--6230619	21	14.5	21	78	7	290	45	2	2	50	1.27
6230448--6230656	10	21.4	10	68	17	59	44	1	1	52	1.21
6230497--6230594	7	14.1	7	68	16	53	50	1	3	45	1.24
6230381--6230650	83	3.3	82	78	9	243	44	1	1	51	1.22
6230324--6230619	104	2.9	103	79	9	268	45	2	2	50	1.27
6235054--6235105	3	17.0	3	96	4	95	32	0	0	67	0.91
6236519--6236552	15	2.3	15	95	5	61	70	0	5	23	1.09
6236726--6236776	18	2.9	18	77	11	54	27	1	7	62	1.33
6236728--6236792	18	3.6	18	70	14	53	26	1	7	64	1.29
6241322--6241521	100	2.0	102	93	2	341	35	13	12	39	1.81
6242560--6242600	12	3.3	12	80	6	55	78	2	0	19	0.87
6242577--6242619	21	2.1	21	86	4	61	69	6	0	23	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6242599--6242641	12	3.7	11	88	11	52	60	9	0	30	1.28
6242605--6242642	12	3.2	12	96	3	69	63	7	0	28	1.23
6243122--6243209	34	2.6	35	83	7	110	40	14	12	31	1.84
6243152--6243206	17	3.2	18	82	7	78	38	14	10	36	1.81
6243209--6243265	17	3.3	18	78	7	73	36	7	14	42	1.72
6243234--6243472	52	4.6	53	72	11	165	41	12	13	32	1.81
6243286--6243446	35	4.7	33	77	11	110	40	12	14	32	1.83
6243199--6243450	120	2.1	120	82	5	303	41	11	13	32	1.81
6243263--6243463	17	11.9	16	72	12	98	42	12	13	31	1.82
6243353--6243472	18	7.0	17	76	6	100	44	11	11	32	1.77
6243627--6243741	47	2.5	45	81	13	137	46	12	8	33	1.72
6243653--6243742	47	1.9	47	88	8	139	46	12	10	31	1.74
6243724--6243912	45	4.2	46	76	11	169	40	12	8	38	1.73
6243738--6243936	92	2.2	90	80	11	217	40	12	8	39	1.73
6245368--6245423	13	4.6	12	79	16	53	1	16	1	80	0.88
6245389--6245441	24	2.2	24	83	6	63	9	11	0	79	0.94
6247885--6247958	12	5.9	12	71	14	60	64	8	0	27	1.21
6247891--6247932	21	2.0	21	90	4	68	66	9	0	23	1.21
6247878--6247950	26	2.8	26	72	13	62	67	8	0	24	1.18
6247918--6247957	13	3.2	13	89	3	55	65	7	0	27	1.20
6249071--6249110	18	2.1	18	86	9	53	75	7	2	15	1.14
6251172--6251201	11	2.7	11	94	0	51	0	3	3	93	0.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6251245--6251469	42	5.4	42	89	3	321	46	19	11	23	1.82
6251245--6251468	83	2.7	84	88	6	321	46	18	11	23	1.82
6251598--6251660	31	2.0	30	82	11	74	34	11	12	41	1.79
6252954--6253047	22	4.4	21	74	20	72	3	15	2	78	0.97
6252973--6253044	14	5.1	14	75	6	65	2	12	2	81	0.90
6253394--6253432	11	3.5	11	82	6	51	0	15	5	79	0.90
6256983--6257099	59	2.0	60	88	3	175	35	9	5	49	1.57
6257626--6257684	31	1.9	30	83	13	75	50	20	8	20	1.73
6261495--6261554	31	2.0	30	93	3	102	33	11	11	43	1.77
6264424--6264466	15	2.9	15	79	6	52	51	6	0	41	1.29
6270430--6270463	16	2.1	17	88	5	52	38	0	2	58	1.13
6270429--6270474	23	2.0	24	86	4	67	36	2	4	56	1.31
6270896--6270940	23	2.0	22	87	8	65	60	0	0	40	0.97
6274087--6274126	20	1.9	22	90	10	66	2	25	7	65	1.32
6282333--6282376	18	2.5	17	78	10	52	52	0	2	45	1.13
6282912--6282957	19	2.5	19	82	10	51	50	2	6	41	1.40
6283161--6283236	11	6.7	11	68	20	50	52	0	0	47	1.00
6285446--6285504	21	3.0	20	83	9	68	25	5	1	67	1.20
6285460--6285512	21	2.5	21	87	3	79	24	3	1	69	1.15
6286239--6286273	12	2.9	12	91	0	52	17	0	11	71	1.14
6291302--6291337	18	2.0	18	89	10	56	58	0	0	41	0.98
6291797--6291824	10	2.8	10	100	0	56	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6292000--6292048	22	2.3	21	85	3	62	30	0	2	67	1.02
6292221--6292263	21	2.0	21	90	0	68	27	0	4	67	1.10
6293575--6293615	22	1.9	22	85	5	57	31	14	12	41	1.83
6293661--6295263	48	32.6	48	77	8	1189	39	19	10	30	1.86
6293653--6295263	97	16.4	96	77	7	1125	39	19	10	30	1.86
6296080--6296168	35	2.4	37	88	5	128	37	14	13	34	1.86
6316857--6316913	25	2.4	24	82	8	73	64	1	1	31	1.13
6316869--6316930	26	2.4	25	81	5	70	62	4	4	27	1.36
6317135--6317171	15	2.5	15	90	0	56	40	0	8	51	1.32
6319370--6319493	32	3.9	31	77	9	126	53	10	2	33	1.48
6319370--6319493	63	2.0	63	82	6	153	53	10	2	33	1.48
6322218--6322273	27	2.1	27	89	0	85	32	12	21	33	1.91
6322610--6322683	35	2.1	35	87	0	103	37	16	9	36	1.81
6323838--6323925	19	4.6	19	75	13	74	52	0	1	46	1.08
6326557--6326616	29	2.1	30	85	11	83	38	5	0	56	1.21
6326983--6327018	9	4.0	9	89	10	56	22	0	0	77	0.76
6333813--6333840	2	14.0	2	100	0	56	0	0	50	50	1.00
6335510--6335563	27	2.0	27	96	0	99	46	14	1	37	1.56
6336147--6336179	14	2.4	14	94	0	57	69	0	0	30	0.88
6350411--6350445	2	18.0	2	88	5	54	0	51	0	48	1.00
6360161--6360189	14	2.1	14	100	0	58	34	10	34	20	1.87
6367573--6367644	3	24.0	3	94	0	126	31	0	2	65	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6368083--6368120	20	1.9	20	88	0	58	21	2	7	68	1.28
6368464--6368530	20	3.2	19	76	18	55	17	5	4	71	1.23
6368543--6368624	41	2.0	41	85	0	110	54	7	4	32	1.49
6379783--6380045	89	3.0	88	75	5	242	20	21	14	43	1.88
6380597--6380725	3	44.7	3	73	16	76	29	3	1	65	1.16
6381594--6381623	9	3.4	9	90	9	53	10	0	0	90	0.47
6381595--6381644	17	2.7	18	80	14	57	18	2	0	80	0.82
6382391--6382441	19	2.6	19	87	6	66	15	5	0	78	0.93
6382391--6382441	20	2.6	20	87	3	68	15	5	0	78	0.93
6402178--6402202	4	6.2	4	100	0	50	76	0	24	0	0.80
6402865--6402894	2	15.5	2	93	6	53	50	0	0	50	1.00
6412039--6412069	11	2.8	11	95	0	53	9	0	0	90	0.46
6412039--6412069	16	2.0	15	93	6	53	9	0	0	90	0.46
6413039--6413074	12	2.9	12	87	4	54	58	0	0	41	0.98
6413090--6413134	22	2.1	21	83	4	54	75	2	2	20	1.01
6413098--6413136	11	3.5	11	85	0	51	76	2	2	17	1.01
6413278--6413322	22	2.0	22	82	0	54	62	0	4	33	1.15
6418331--6418360	15	1.9	16	93	6	53	53	6	30	10	1.60
6424748--6424798	20	2.5	20	100	0	102	25	23	5	45	1.75
6425356--6425978	48	12.9	49	80	10	655	28	11	20	39	1.88
6426990--6427014	10	2.5	10	100	0	50	28	0	0	72	0.86
6427082--6427113	10	3.2	10	90	0	55	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6427141--6427184	21	2.1	21	83	8	54	75	2	2	20	1.03
6427332--6427376	22	2.0	22	82	0	54	62	0	4	33	1.15
6436695--6436721	14	1.9	14	100	0	54	0	11	0	88	0.50
6444394--6444420	14	1.9	14	100	0	54	44	14	14	25	1.84
6446451--6446476	7	3.7	7	100	0	52	11	0	0	88	0.52
6448693--6448718	3	8.7	3	100	0	52	65	0	0	34	0.93
6451103--6451144	10	4.0	11	82	17	54	28	0	0	71	0.86
6451105--6451144	21	2.0	20	85	14	55	27	0	0	72	0.85
6451965--6451994	2	15.5	2	93	6	53	50	0	0	50	1.00
6454512--6454584	30	2.4	31	84	11	105	35	9	5	49	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138