genome.fa.s124.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  65  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12932093--12932838	317	2.3	322	79	4	788	20	28	28	23	1.99
12932811--12932863	26	2.0	26	89	7	81	28	24	18	28	1.98
12940417--12940469	26	2.0	26	85	0	70	30	26	18	24	1.98
12940759--12940811	26	2.0	26	92	7	90	26	24	20	28	1.99
12941089--12943491	821	2.9	821	93	0	3947	26	23	24	26	2.00
12943148--12943839	158	4.3	157	75	8	522	20	28	29	21	1.98
12943560--12943922	170	2.1	171	83	4	439	20	28	29	21	1.98
12944011--12944506	160	3.1	159	75	8	375	19	26	30	24	1.98
12944480--12944532	26	2.0	26	86	13	74	24	22	20	32	1.98
12946996--12947047	26	2.0	26	89	10	81	30	26	17	25	1.97
12946996--12947047	25	2.0	25	89	10	79	30	26	17	25	1.97
12947166--12947545	158	2.4	158	80	7	396	19	27	30	22	1.98
12947021--12947706	159	4.3	157	75	8	507	21	27	29	21	1.98
12947433--12947790	169	2.1	168	82	4	427	20	28	29	22	1.98
12949067--12949119	26	2.0	26	92	0	88	26	26	20	26	1.99
12949421--12949473	26	2.0	26	88	0	79	30	28	16	24	1.97
12948996--12949656	354	1.9	354	86	1	941	18	28	29	22	1.98
12950292--12950344	26	2.0	26	88	0	79	28	26	18	26	1.98
12950326--12950819	158	3.1	158	78	7	455	19	27	29	23	1.98
12950326--12950819	160	3.1	157	78	6	521	19	27	29	23	1.98
12950793--12950845	26	2.0	26	88	0	79	24	22	20	32	1.98
12952064--12952387	171	1.9	171	80	3	384	20	26	30	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12952373--12952425	26	2.0	26	88	0	79	26	24	20	28	1.99
12952715--12952767	26	2.0	26	92	0	88	28	28	18	24	1.98
12952741--12952985	131	1.9	131	80	5	289	22	23	30	24	1.99
12953189--12953241	26	2.0	26	92	7	90	26	24	20	28	1.99
12954439--12954491	26	2.0	26	100	0	106	26	26	20	26	1.99
12954537--12954969	158	2.7	158	79	7	455	18	29	30	22	1.97
12954941--12954993	26	2.0	26	89	7	81	28	22	18	30	1.98
12956118--12956169	26	2.0	25	88	3	77	28	25	19	26	1.98
12956815--12956868	26	2.1	26	100	0	108	24	29	22	24	1.99
12956905--12957347	159	2.8	155	79	10	459	18	27	30	23	1.98
12957320--12957372	26	2.0	26	85	7	72	28	22	18	30	1.98
12957690--12957741	26	2.0	26	96	0	95	30	25	19	25	1.98
12957902--12957967	21	3.1	21	93	0	114	16	13	45	24	1.84
12958233--12958285	26	2.0	26	89	7	81	26	22	20	30	1.98
12960318--12960370	26	2.0	26	89	7	81	26	22	20	30	1.98
12961310--12961715	157	2.6	159	81	3	417	20	28	26	23	1.99
12962081--12962131	26	2.0	26	92	0	84	23	29	19	27	1.98
12962584--12962634	26	2.0	26	88	7	77	29	25	17	27	1.98
12963595--12963984	159	2.4	158	75	6	363	18	25	31	24	1.98
12963957--12964008	26	2.0	25	88	3	77	28	21	19	30	1.97
12964891--12965396	159	3.2	159	74	8	393	22	27	28	21	1.99
12965370--12965422	26	2.0	26	89	7	81	30	22	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12965763--12965815	26	2.0	26	92	0	88	28	24	18	28	1.98
12964316--12966137	898	2.1	872	81	5	2102	21	27	27	23	1.99
12966147--12966185	18	2.2	17	86	4	51	7	20	41	30	1.80
12966295--12966345	26	2.0	26	88	7	77	29	21	19	29	1.98
12974114--12974598	158	3.1	158	77	4	413	19	28	29	22	1.98
12974760--12974811	26	2.0	26	88	0	77	26	28	19	25	1.98
12974786--12975290	159	3.2	157	75	5	489	19	26	29	24	1.99
12975264--12975315	26	2.0	25	92	3	86	26	21	21	30	1.98
12975939--12975991	26	2.0	26	92	0	88	28	28	18	24	1.98
12976281--12976333	26	2.0	26	89	7	81	28	24	18	28	1.98
12976914--12977348	158	2.7	158	74	6	396	20	27	28	23	1.99
12976737--12977348	316	1.9	315	82	2	753	20	27	29	22	1.98
12977329--12977381	26	2.0	26	85	0	70	28	24	18	28	1.98
12977777--12977829	26	2.0	26	89	7	81	28	22	18	30	1.98
12978127--12978176	26	1.9	26	91	0	82	26	28	18	28	1.98
12978153--12978547	159	2.5	158	75	11	385	21	27	29	21	1.98
12978985--12979037	26	2.0	26	92	7	90	26	26	20	26	1.99
12979328--12979380	26	2.0	26	92	0	88	24	28	22	24	2.00
12978952--12979703	343	2.2	341	83	4	908	19	26	28	25	1.99
12979430--12979939	157	3.2	157	81	4	458	20	27	28	24	1.99
12979600--12979939	157	2.2	157	91	0	545	20	26	27	25	1.99
12979600--12980012	157	2.6	156	85	2	524	20	26	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12980169--12980221	26	2.0	26	92	0	88	28	28	18	24	1.98
12980513--12980564	26	2.0	26	88	7	79	28	26	17	26	1.97
12980156--12980781	343	1.8	343	87	2	925	20	26	30	22	1.98
12980658--12981041	160	2.4	159	77	6	411	19	26	29	24	1.98
12981015--12981067	26	2.0	26	92	7	90	26	24	20	28	1.99
12980268--12981602	503	2.7	498	81	4	1393	20	26	29	23	1.99
12981042--12981486	159	2.8	159	75	7	400	20	27	28	22	1.99
12981581--12982598	508	2.0	508	83	2	1292	21	27	28	22	1.99
12982843--12982868	11	2.4	11	100	0	52	19	30	30	19	1.96
12983457--12983507	26	2.0	26	88	0	75	27	27	17	27	1.98
12984361--12984855	159	3.1	157	76	8	401	19	27	29	24	1.98
12991719--12991770	26	2.0	26	92	7	88	30	25	15	28	1.96
12992098--12992150	26	2.0	26	92	0	88	26	24	22	26	2.00
12993067--12993118	26	2.0	26	88	0	77	28	25	19	26	1.98
12993092--12993588	152	3.2	155	76	9	375	19	25	29	24	1.98
12994251--12994303	26	2.0	26	85	0	70	28	28	16	26	1.97
12994329--12994819	158	3.1	158	75	4	468	21	26	29	23	1.99
12994937--12994989	26	2.0	26	96	0	97	28	30	18	22	1.98
12995649--12995701	26	2.0	26	85	0	70	30	26	16	26	1.97
12996150--12996202	26	2.0	26	92	7	90	26	20	18	33	1.96
12996477--12996529	26	2.0	26	88	0	79	28	26	16	28	1.97
12996824--12996876	26	2.0	26	89	7	81	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12997204--12997256	26	2.0	26	92	0	88	28	28	18	24	1.98
12997305--12997734	159	2.7	158	77	7	406	18	27	30	24	1.98
12997706--12997758	26	2.0	26	85	7	72	28	22	18	30	1.98
13005211--13005712	159	3.2	156	75	5	497	21	27	28	22	1.99
13006064--13006116	26	2.0	26	92	0	88	32	28	15	24	1.95
13007555--13007607	26	2.0	26	92	0	88	24	24	22	28	2.00
13008813--13008865	26	2.0	26	82	13	65	26	22	20	30	1.98
13009082--13009711	159	4.0	159	82	2	739	19	28	30	21	1.97
13009336--13010438	514	2.1	514	82	2	1331	21	26	28	23	1.99
13010199--13010249	26	2.0	26	92	7	86	27	21	19	31	1.97
13010754--13011102	157	2.2	157	82	4	398	19	30	28	21	1.97
13011075--13011127	26	2.0	26	88	0	79	30	26	18	24	1.98
13011259--13011311	26	2.0	26	85	7	72	30	22	16	30	1.96
13011562--13011614	26	2.0	26	89	7	81	26	22	20	30	1.98
13012193--13012220	13	2.2	13	100	0	56	7	46	25	21	1.76
13012319--13012622	158	1.9	158	84	4	407	16	26	30	25	1.97
13012599--13012651	26	2.0	26	85	7	72	28	24	18	28	1.98
13019068--13019120	26	2.0	26	85	7	72	28	24	16	30	1.97
13020344--13020396	26	2.0	26	92	0	88	32	28	15	24	1.95
13020509--13020873	159	2.3	159	79	3	376	18	23	31	26	1.98
13020846--13020898	26	2.0	26	85	7	72	33	18	16	30	1.94
13021201--13021253	26	2.0	26	92	0	88	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13020589--13021569	355	2.8	342	78	8	795	19	25	30	24	1.98
13021093--13022082	512	1.9	514	82	3	1251	20	26	30	23	1.98
13022776--13022828	26	2.0	26	88	0	79	26	24	20	28	1.99
13023119--13023171	26	2.0	26	89	7	81	32	24	15	28	1.95
13023241--13023273	11	3.0	11	90	0	57	24	27	30	18	1.98
13023851--13023903	26	2.0	26	85	7	72	30	26	16	26	1.97
13023826--13024278	189	2.4	185	82	5	545	20	26	27	24	1.99
13024224--13024276	26	2.0	26	92	7	90	26	24	20	28	1.99
13025129--13025445	171	1.9	170	84	4	424	20	27	31	20	1.98
13025912--13025964	26	2.0	26	89	7	81	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138