genome.fa.s124.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  84  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14419490--14419528	8	4.9	8	84	12	53	15	0	2	82	0.79
14419490--14419683	23	8.0	23	64	19	65	23	4	2	69	1.18
14419509--14419550	11	3.5	12	83	6	50	23	2	2	71	1.10
14419573--14419682	18	6.8	16	72	20	68	26	2	1	69	1.12
14419566--14419685	14	8.5	14	66	27	58	26	2	1	69	1.11
14420553--14420595	14	3.0	14	83	6	59	16	0	2	81	0.79
14420647--14420686	14	2.7	15	84	11	55	12	10	0	77	0.99
14420658--14420709	5	10.6	5	76	19	56	15	3	1	78	0.98
14420624--14420709	18	4.8	18	69	18	54	13	6	3	75	1.14
14420725--14421006	60	4.7	59	86	4	381	44	7	13	34	1.72
14420735--14421006	118	2.3	117	89	5	413	43	7	13	35	1.74
14422207--14422259	26	2.0	26	92	0	88	24	18	28	28	1.98
14422309--14422752	196	2.3	197	88	0	665	25	28	24	21	1.99
14422613--14422665	26	2.0	26	88	0	79	32	20	22	24	1.98
14423114--14423166	26	2.0	26	88	0	79	30	20	24	24	1.99
14424054--14424106	26	2.0	26	96	0	97	24	20	28	26	1.99
14424264--14424316	26	2.0	26	85	0	70	30	16	26	26	1.97
14424415--14424723	159	2.0	157	81	3	361	22	30	28	19	1.97
14424731--14424783	26	2.0	26	88	0	79	24	16	28	30	1.97
14425453--14425505	26	2.0	26	89	7	81	28	18	24	28	1.98
14425924--14427048	158	7.1	158	77	4	965	23	29	27	19	1.98
14425924--14427048	475	2.4	474	82	3	1332	23	29	27	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14425924--14427040	317	3.5	316	77	4	752	23	29	27	19	1.98
14427022--14427074	26	2.0	26	88	0	79	26	18	26	28	1.98
14427742--14427820	26	3.0	26	92	3	124	29	18	22	29	1.98
14427793--14428186	158	2.5	157	75	6	353	25	29	26	18	1.98
14428660--14429077	158	2.6	158	76	5	414	25	27	27	19	1.99
14429503--14429555	26	2.0	26	85	0	70	30	20	22	26	1.98
14427768--14429975	868	2.5	867	81	4	2505	24	29	26	20	1.99
14429539--14430507	158	6.1	157	72	6	675	24	30	26	19	1.98
14430162--14430816	344	1.9	344	79	4	739	26	30	24	19	1.98
14430982--14431034	26	2.0	26	96	0	97	24	20	28	26	1.99
14431692--14432137	158	2.8	153	75	8	412	24	28	27	19	1.98
14432165--14432217	26	2.0	26	85	0	70	30	20	24	24	1.99
14432545--14432595	26	2.0	26	88	7	77	29	19	21	29	1.98
14432571--14433030	159	2.9	158	77	10	425	25	28	26	19	1.99
14433667--14433700	11	3.1	11	86	0	50	14	26	38	20	1.91
14433657--14433700	22	2.0	22	86	0	61	18	29	34	18	1.94
14433770--14433822	26	2.0	26	89	7	81	30	18	22	28	1.98
14433796--14434158	158	2.3	158	79	5	401	23	30	25	19	1.98
14434495--14435159	184	3.6	184	85	0	839	23	29	26	20	1.98
14434838--14434890	26	2.0	26	89	7	81	30	22	20	26	1.98
14435022--14435072	26	2.0	26	96	0	93	25	19	27	27	1.99
14435022--14435079	26	2.2	26	90	3	89	25	20	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14435945--14435995	26	2.0	26	92	7	86	27	15	25	31	1.96
14435945--14436002	26	2.2	26	87	9	82	27	17	24	31	1.97
14436675--14436727	26	2.0	26	89	7	81	30	22	20	26	1.98
14436859--14436910	26	2.0	26	92	0	86	25	17	28	28	1.97
14437816--14438379	158	3.6	156	74	5	420	21	29	27	21	1.98
14438353--14438405	26	2.0	26	92	0	88	24	18	28	28	1.98
14438507--14438929	159	2.7	158	77	5	451	23	30	25	20	1.98
14438977--14439029	26	2.0	26	85	0	70	26	16	26	30	1.97
14439547--14439598	26	2.0	26	92	7	88	26	19	26	26	1.99
14440006--14440030	12	2.1	12	100	0	50	16	32	16	36	1.90
14440059--14440111	26	2.0	26	85	7	72	30	16	24	28	1.97
14440076--14440586	158	3.2	158	73	8	403	23	29	26	20	1.99
14439547--14440523	513	1.9	513	83	4	1272	25	28	26	19	1.99
14440929--14440979	26	2.0	26	92	0	84	27	15	29	27	1.96
14440378--14441307	368	2.6	358	82	4	1052	23	30	26	20	1.98
14441593--14441645	26	2.0	26	85	7	72	22	13	30	33	1.92
14442327--14442378	26	2.0	26	88	7	79	30	15	23	30	1.95
14442511--14442562	26	2.0	26	96	0	95	25	19	28	26	1.98
14442325--14442671	184	1.9	184	86	2	500	25	26	25	21	2.00
14442662--14442692	12	2.6	12	89	0	53	6	35	22	35	1.80
14443218--14443270	26	2.0	26	92	0	88	24	20	26	28	1.99
14444073--14444125	26	2.0	26	88	0	79	24	16	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14444451--14444503	26	2.0	26	88	0	79	26	15	26	32	1.95
14445202--14445504	158	1.9	158	80	1	347	21	31	29	17	1.96
14445748--14446249	159	3.2	157	77	7	496	22	30	26	20	1.98
14446223--14446275	26	2.0	26	85	0	70	30	20	22	26	1.98
14446327--14446727	171	2.3	170	82	5	461	24	31	25	18	1.98
14446613--14447106	159	3.1	159	73	11	359	23	29	27	19	1.98
14448725--14449207	158	3.1	156	73	7	447	25	30	25	19	1.98
14449215--14449717	159	3.2	157	73	6	413	22	30	26	19	1.98
14449691--14449743	26	2.0	26	89	7	81	26	22	26	24	2.00
14451296--14451348	26	2.0	26	92	7	90	30	20	22	26	1.98
14451322--14452131	159	5.1	155	72	6	527	23	29	27	19	1.98
14451321--14452139	317	2.6	316	84	3	1040	23	29	27	19	1.98
14452491--14452545	26	2.2	25	90	9	85	29	20	25	25	1.99
14452676--14452728	26	2.0	26	89	7	81	26	18	26	28	1.98
14453741--14453790	26	1.9	26	88	8	75	28	18	30	24	1.97
14454458--14454508	26	2.0	26	92	7	86	29	21	21	27	1.99
14454484--14455246	327	2.4	313	82	6	870	23	29	27	18	1.98
14455956--14456031	26	2.9	26	96	3	136	30	19	23	26	1.98
14456007--14456500	159	3.1	157	76	8	428	23	30	27	18	1.98
14456482--14456532	26	2.0	26	84	7	68	29	15	25	29	1.96
14457719--14457769	26	2.0	26	88	0	75	27	17	27	27	1.98
14458534--14459071	159	3.4	158	76	6	541	23	30	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14459045--14459097	26	2.0	26	92	0	88	24	18	28	28	1.98
14458852--14459526	354	1.9	354	84	4	905	24	28	27	20	1.99
14459243--14459598	183	1.9	184	85	5	488	25	27	25	20	1.99
14459425--14459926	158	3.2	155	76	6	504	24	29	26	19	1.99
14460268--14460320	26	2.0	26	89	7	81	32	18	22	26	1.97
14459718--14460385	368	1.8	355	82	4	852	23	29	26	19	1.98
14460293--14460796	159	3.2	159	75	8	409	23	30	27	19	1.98
14458568--14460855	855	2.7	853	82	3	2809	23	29	26	20	1.99
14460770--14460822	26	2.0	26	92	0	88	28	18	24	28	1.98
14461489--14461541	26	2.0	26	89	7	81	28	20	24	26	1.99
14461514--14462087	158	3.6	157	79	2	540	24	29	28	18	1.98
14462503--14462555	26	2.0	26	85	7	72	28	16	26	28	1.97
14462529--14463023	158	3.1	158	74	7	428	23	28	27	20	1.99
14463004--14463056	26	2.0	26	88	0	79	26	18	26	28	1.98
14469594--14470103	158	3.2	157	76	7	530	24	30	26	18	1.98
14470901--14470951	26	2.0	26	92	7	86	29	15	23	31	1.95
14472476--14472526	26	2.0	26	92	7	86	29	19	23	27	1.98
14473187--14473239	26	2.0	26	89	7	81	30	22	20	26	1.98
14473212--14473643	159	2.7	158	75	2	400	25	28	26	19	1.99
14476756--14476808	26	2.0	26	89	7	81	30	20	22	26	1.98
14476903--14477274	158	2.4	159	75	6	387	23	29	25	21	1.99
14477095--14477771	184	3.6	182	78	7	592	24	29	25	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14477436--14477793	196	1.8	197	81	3	452	24	29	24	21	1.99
14478136--14478188	26	2.0	26	88	0	79	26	18	26	28	1.98
14480258--14480622	158	2.3	159	81	5	432	23	29	27	20	1.98
14480604--14480639	18	2.0	18	94	0	63	38	13	19	27	1.90
14481343--14481842	158	3.2	158	75	5	393	22	28	28	20	1.99
14482380--14482792	158	2.6	158	76	5	397	22	27	29	20	1.99
14482852--14482904	26	2.0	26	89	7	81	26	22	26	24	2.00
14484072--14484124	26	2.0	26	92	0	88	26	20	26	26	1.99
14484163--14484188	13	2.0	13	100	0	52	15	23	53	7	1.67
14483568--14485792	892	2.5	881	80	5	2347	23	28	27	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138