genome.fa.s124.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  99  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15604432--15604782	185	1.9	185	79	6	399	22	29	28	19	1.98
15604922--15604974	26	2.0	26	85	0	70	26	20	24	28	1.99
15603917--15605405	344	4.3	342	82	3	1540	24	29	26	19	1.98
15605277--15605331	26	2.1	26	83	6	67	29	18	21	30	1.97
15606494--15606905	158	2.6	157	81	6	440	24	29	27	18	1.98
15607529--15607887	159	2.3	159	78	5	375	24	30	25	19	1.98
15608005--15608057	26	2.0	26	92	0	88	24	20	26	28	1.99
15609507--15609559	26	2.0	26	89	7	81	28	18	24	28	1.98
15610309--15610361	26	2.0	26	89	7	81	30	18	22	28	1.98
15610727--15611219	159	3.1	157	74	8	368	22	29	27	20	1.99
15611193--15611245	26	2.0	26	88	0	79	22	20	28	28	1.99
15611561--15611613	26	2.0	26	92	0	88	32	18	20	28	1.97
15611595--15612250	158	4.1	157	77	6	570	23	30	26	19	1.98
15612224--15612276	26	2.0	26	89	7	81	24	16	28	30	1.97
15612419--15612471	26	2.0	26	89	7	81	28	18	24	28	1.98
15612604--15613293	355	2.0	341	80	6	758	24	29	25	20	1.99
15614649--15615143	159	3.1	157	71	9	425	21	30	27	20	1.98
15621935--15621986	26	2.0	26	88	7	79	30	19	23	26	1.98
15621960--15622455	157	3.1	157	77	5	480	23	29	27	19	1.98
15622118--15622915	355	2.3	343	83	5	958	23	30	27	18	1.98
15622817--15623318	159	3.2	155	76	7	459	23	29	28	19	1.98
15623294--15623345	26	2.0	26	88	0	77	26	13	30	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15624029--15624495	158	3.0	157	75	5	420	22	32	26	18	1.97
15624190--15624881	351	2.0	342	81	6	806	23	29	26	20	1.98
15624658--15625112	157	2.9	158	74	6	454	23	29	28	18	1.98
15624658--15625136	158	3.0	158	73	6	466	22	31	28	18	1.97
15625171--15625223	26	2.0	26	88	0	79	26	18	26	28	1.98
15629994--15630046	26	2.0	26	92	0	88	24	18	28	28	1.98
15630373--15630424	26	2.0	26	88	7	79	30	19	23	26	1.98
15630874--15630926	26	2.0	26	88	0	79	24	13	28	33	1.93
15631595--15631645	26	2.0	26	92	7	86	29	21	21	27	1.99
15632095--15632147	26	2.0	26	92	7	90	24	20	26	28	1.99
15632293--15632604	174	1.8	172	81	6	398	20	30	29	20	1.97
15632431--15632960	158	3.3	157	77	7	507	20	30	28	20	1.98
15632942--15632994	26	2.0	26	88	0	79	24	16	28	30	1.97
15633848--15633900	26	2.0	26	85	7	72	30	20	20	28	1.98
15634347--15634399	26	2.0	26	92	0	88	22	20	30	26	1.98
15636087--15636139	26	2.0	26	85	7	72	26	20	24	28	1.99
15635942--15636289	184	1.9	184	81	1	428	24	29	25	21	1.99
15636126--15637175	159	6.6	156	71	10	514	25	29	25	19	1.99
15636126--15637175	318	3.3	317	78	6	958	25	29	25	19	1.99
15636427--15637175	317	2.3	318	78	9	764	25	29	25	19	1.99
15637247--15637299	26	2.0	26	92	7	90	30	16	22	30	1.96
15637272--15637697	159	2.7	157	81	4	482	24	28	27	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15637747--15637799	26	2.0	26	96	0	97	24	16	28	30	1.97
15638497--15638549	26	2.0	26	92	0	88	26	20	26	26	1.99
15638500--15638556	26	2.2	26	87	3	78	29	21	26	22	1.99
15639218--15639270	26	2.0	26	92	7	90	28	20	24	26	1.99
15639719--15639771	26	2.0	26	92	0	88	24	18	28	28	1.98
15640090--15640142	26	2.0	26	85	7	72	28	20	24	26	1.99
15640126--15640618	159	3.1	157	79	3	511	21	30	27	19	1.98
15640592--15640644	26	2.0	26	92	0	88	26	20	26	26	1.99
15640595--15640977	193	2.0	193	99	0	757	24	21	28	25	1.99
15641506--15641558	26	2.0	26	92	7	90	28	20	24	26	1.99
15641531--15641997	159	2.9	158	78	4	467	24	30	25	19	1.98
15642386--15642438	26	2.0	26	89	7	81	32	18	20	28	1.97
15643536--15644544	352	2.8	351	81	6	1036	22	29	26	20	1.99
15644444--15644496	26	2.0	26	89	7	81	26	20	26	26	1.99
15644945--15644997	26	2.0	26	88	0	79	26	20	26	26	1.99
15645790--15645842	26	2.0	26	82	7	63	30	16	20	32	1.95
15648705--15648757	26	2.0	26	100	0	106	26	20	26	26	1.99
15649991--15650047	26	2.2	26	87	0	78	28	17	22	31	1.97
15650123--15650518	159	2.5	158	75	5	386	23	29	24	21	1.99
15650496--15650543	25	1.9	25	87	8	71	22	16	31	29	1.96
15651791--15651843	26	2.0	26	88	0	79	24	20	26	28	1.99
15651606--15652185	184	3.2	184	80	3	610	24	28	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15652000--15652501	159	3.2	158	74	5	440	24	28	26	21	1.99
15652475--15652527	26	2.0	26	92	0	88	24	15	26	33	1.95
15652905--15652947	16	2.8	16	89	3	70	25	51	16	6	1.69
15653601--15653653	26	2.0	26	89	7	81	28	22	24	24	2.00
15653772--15654079	159	1.9	158	82	3	377	24	30	25	19	1.98
15655169--15655221	26	2.0	26	89	7	81	26	18	26	28	1.98
15655379--15655431	26	2.0	26	89	7	81	30	18	20	30	1.97
15655879--15655931	26	2.0	26	82	7	63	26	16	24	32	1.97
15661984--15662036	26	2.0	26	92	7	90	30	20	22	26	1.98
15661768--15662132	196	1.9	197	83	4	486	24	29	26	20	1.99
15662009--15662437	159	2.7	157	77	5	416	24	29	26	19	1.99
15662853--15662905	26	2.0	26	89	7	81	28	18	24	28	1.98
15664189--15664221	11	3.0	11	90	0	57	18	33	27	21	1.96
15664291--15664343	26	2.0	26	92	7	90	28	20	24	26	1.99
15664065--15664772	371	1.9	375	87	2	1032	27	30	25	16	1.97
15665911--15665963	26	2.0	26	85	7	72	26	16	26	30	1.97
15666581--15666633	26	2.0	26	92	0	88	24	18	28	28	1.98
15667280--15667332	26	2.0	26	89	7	81	32	20	20	26	1.98
15668334--15668386	26	2.0	26	92	0	88	26	20	26	26	1.99
15669406--15670492	593	1.8	597	82	3	1425	20	28	26	23	1.99
15670188--15670770	157	3.7	157	73	7	473	22	29	27	20	1.98
15671409--15671461	26	2.0	26	85	7	72	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15671593--15672124	159	3.4	154	74	10	468	24	29	26	19	1.99
15671434--15672179	316	2.4	316	83	2	901	24	29	26	18	1.98
15672737--15672788	26	2.0	26	85	7	70	26	19	21	32	1.97
15672763--15673131	171	2.2	170	78	6	370	23	28	25	22	1.99
15673607--15673659	26	2.0	26	88	0	79	26	15	26	32	1.95
15680222--15680274	26	2.0	26	85	0	70	32	18	22	26	1.97
15680720--15680772	26	2.0	26	85	0	70	24	13	30	32	1.93
15682151--15682203	26	2.0	26	96	0	97	24	20	28	26	1.99
15681762--15682492	379	2.0	367	79	5	806	23	28	26	21	1.99
15689279--15689693	159	2.6	158	75	1	393	25	31	26	16	1.97
15689715--15689766	26	2.0	26	92	3	88	25	21	26	26	1.99
15689411--15690140	329	2.2	336	80	4	787	26	28	26	19	1.99
15690057--15690109	26	2.0	26	88	0	79	30	18	22	28	1.98
15691054--15691101	21	2.3	21	96	0	87	4	45	25	25	1.71
15691289--15691341	26	2.0	26	86	13	74	24	18	26	30	1.98
15691076--15691711	343	1.9	343	85	1	898	24	28	26	21	1.99
15692379--15692874	158	3.1	156	74	6	433	22	30	27	19	1.98
15692855--15692906	26	2.0	26	84	0	68	28	13	25	32	1.93
15693577--15693629	26	2.0	26	92	7	90	28	16	24	30	1.97
15693588--15693646	26	2.2	26	81	3	64	35	20	18	25	1.95
15693602--15694019	159	2.6	160	80	4	454	24	28	28	18	1.98
15694079--15694131	26	2.0	26	92	0	88	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15693919--15694479	196	3.0	184	77	8	597	24	29	27	18	1.98
15694275--15694324	26	1.9	26	84	8	66	34	18	26	22	1.96
15694301--15694802	158	3.2	157	77	7	507	21	30	29	18	1.97
15694776--15694826	26	2.0	26	88	7	77	31	21	21	25	1.98
15694621--15694986	184	2.0	184	81	6	438	24	30	25	18	1.98
15693575--15694924	697	1.9	699	83	1	1751	23	29	27	19	1.98
15694258--15695382	501	2.2	500	84	2	1402	23	29	27	18	1.98
15695896--15695928	11	3.0	11	100	0	66	9	36	36	18	1.82
15696340--15696392	26	2.0	26	92	0	88	24	18	28	28	1.98
15697628--15697678	26	2.0	26	92	0	84	27	21	27	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138