genome.fa.s124.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  94  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15207665--15208111	158	2.8	155	75	11	370	25	26	26	21	2.00
15207697--15209704	708	2.9	704	83	4	2383	24	27	26	21	1.99
15209075--15209127	26	2.0	26	92	7	90	28	20	24	26	1.99
15209579--15209628	26	1.9	26	88	8	75	32	16	26	26	1.96
15210804--15210856	26	2.0	26	92	7	90	30	20	22	26	1.98
15210988--15211040	26	2.0	26	88	0	79	26	18	26	28	1.98
15211151--15211633	159	2.9	161	74	8	456	22	29	28	19	1.98
15211674--15211724	26	2.0	26	84	0	66	25	11	33	29	1.91
15211871--15211923	26	2.0	26	92	0	88	26	20	26	26	1.99
15211665--15212041	198	1.9	197	79	6	422	24	25	28	21	1.99
15212081--15212159	26	3.0	26	90	0	131	32	20	18	27	1.96
15212292--15212344	26	2.0	26	88	0	79	26	18	26	28	1.98
15212601--15213114	195	2.7	188	80	5	574	23	26	26	23	2.00
15213012--15213062	26	2.0	26	92	7	86	29	15	23	31	1.95
15213563--15213615	26	2.0	26	85	0	70	26	20	28	24	1.99
15212791--15213956	551	2.1	551	82	1	1422	22	28	26	22	1.99
15214247--15214297	26	2.0	26	84	7	68	29	11	29	29	1.92
15214444--15214496	26	2.0	26	88	0	79	26	18	26	28	1.98
15214845--15215136	158	1.8	158	79	2	336	21	32	27	18	1.97
15215334--15215386	26	2.0	26	92	0	88	28	18	24	28	1.98
15215003--15215415	185	2.2	184	82	4	492	24	28	25	21	1.99
15216057--15216109	26	2.0	26	89	7	81	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15216082--15216511	159	2.7	157	79	4	425	24	29	27	19	1.98
15216569--15216621	26	2.0	26	82	13	65	32	16	22	28	1.96
15216594--15216999	159	2.6	158	76	3	386	25	30	26	18	1.98
15216054--15217149	513	2.2	499	83	3	1343	24	29	25	20	1.99
15218074--15218126	26	2.0	26	89	7	81	24	16	28	30	1.97
15219192--15219217	13	2.0	13	100	0	52	15	23	53	7	1.67
15219979--15220031	26	2.0	26	88	0	79	22	20	28	28	1.99
15220702--15220754	26	2.0	26	92	7	90	28	16	24	30	1.97
15220728--15221172	158	2.8	158	76	5	380	24	28	25	21	1.99
15221213--15221265	26	2.0	26	92	7	90	28	20	24	26	1.99
15221296--15221664	158	2.3	158	77	6	397	21	29	27	21	1.99
15221638--15221690	26	2.0	26	92	7	90	24	16	26	32	1.97
15223186--15223264	26	3.0	26	96	3	142	30	20	22	26	1.98
15223555--15223607	26	2.0	26	96	0	97	24	20	28	26	1.99
15223751--15223803	26	2.0	26	85	7	72	28	16	24	30	1.97
15223777--15224258	158	3.0	157	76	7	481	22	29	28	19	1.98
15223373--15224658	697	1.8	693	79	5	1464	23	28	27	20	1.99
15224632--15224684	26	2.0	26	89	7	81	30	20	22	26	1.98
15224658--15225153	159	3.1	159	78	4	545	23	31	26	18	1.98
15225134--15225186	26	2.0	26	88	0	79	26	18	26	28	1.98
15226199--15226251	26	2.0	26	92	7	90	26	20	26	26	1.99
15226408--15226460	26	2.0	26	85	7	72	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15226909--15226961	26	2.0	26	92	7	90	26	20	26	26	1.99
15227278--15227329	26	2.0	26	84	0	68	30	17	25	26	1.97
15229195--15229247	26	2.0	26	88	0	79	24	20	28	26	1.99
15229721--15229773	26	2.0	26	92	0	88	24	18	28	28	1.98
15230089--15230140	26	2.0	25	89	10	79	32	21	21	25	1.98
15230702--15230754	26	2.0	26	92	0	88	24	18	28	28	1.98
15231069--15231121	26	2.0	26	92	7	90	32	16	20	30	1.95
15230521--15231565	367	3.0	344	78	8	987	23	28	26	21	1.99
15232097--15232148	26	2.0	26	92	0	86	25	17	28	28	1.97
15232474--15232526	26	2.0	26	92	7	90	28	20	24	26	1.99
15232593--15233072	158	3.1	154	73	11	434	23	28	27	19	1.98
15233805--15233856	26	2.0	26	92	7	88	28	19	25	26	1.98
15234148--15234499	154	2.3	153	81	6	388	25	29	24	20	1.99
15236269--15236321	26	2.0	26	92	0	88	24	18	28	28	1.98
15236294--15236725	171	2.5	170	82	4	503	22	29	28	19	1.98
15238182--15238234	26	2.0	26	85	0	70	32	18	18	30	1.96
15239442--15239878	159	2.8	157	76	5	371	24	31	26	17	1.97
15241327--15242008	158	4.3	157	77	4	643	24	30	26	18	1.98
15241327--15241998	317	2.1	317	87	1	943	24	30	26	18	1.98
15242087--15242165	26	3.0	26	85	3	106	22	18	30	27	1.98
15242415--15242467	26	2.0	26	89	7	81	28	16	24	30	1.97
15242967--15243019	26	2.0	26	85	7	72	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15247392--15247443	25	2.1	25	89	7	79	28	17	23	30	1.97
15248256--15248308	26	2.0	26	88	0	79	28	20	24	26	1.99
15248624--15248676	26	2.0	26	88	0	79	30	22	18	28	1.98
15247878--15248692	367	2.2	367	86	3	1097	24	28	25	21	1.99
15249123--15249175	26	2.0	26	85	0	70	28	20	22	28	1.99
15249478--15249530	26	2.0	26	92	7	90	26	16	26	30	1.97
15250028--15250080	26	2.0	26	88	0	79	24	16	28	30	1.97
15250999--15251051	26	2.0	26	92	0	88	24	18	30	26	1.98
15252022--15252431	159	2.6	156	77	5	414	25	29	26	19	1.98
15253549--15253601	26	2.0	26	92	0	88	26	18	28	26	1.98
15253546--15253905	196	1.8	196	83	2	472	23	26	27	23	2.00
15254224--15254276	26	2.0	26	92	0	88	26	20	26	26	1.99
15254618--15255120	159	3.2	158	74	8	403	24	29	25	20	1.99
15255094--15255146	26	2.0	26	89	7	81	26	18	26	28	1.98
15256664--15257165	158	3.2	156	75	5	461	22	29	26	20	1.99
15257139--15257191	26	2.0	26	85	0	70	24	18	28	28	1.98
15256954--15257594	355	1.8	355	83	3	851	23	30	27	18	1.98
15257994--15258044	26	2.0	26	96	0	93	25	15	27	31	1.96
15258717--15258769	26	2.0	26	92	7	90	28	20	24	26	1.99
15258743--15260134	158	8.8	156	72	6	685	24	29	26	19	1.99
15258742--15260134	317	4.4	316	81	3	1399	24	29	26	19	1.99
15260156--15260208	26	2.0	26	88	0	79	24	16	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15261007--15261083	26	3.0	26	94	0	118	27	16	27	28	1.97
15261241--15261293	26	2.0	26	89	7	81	32	22	20	24	1.98
15261267--15261768	159	3.2	158	75	4	456	25	30	25	18	1.98
15262084--15262133	26	2.0	26	88	4	75	28	18	24	30	1.97
15261426--15262186	341	2.2	341	80	5	831	25	28	26	19	1.98
15269620--15270094	148	3.2	143	74	15	419	23	30	27	18	1.98
15270068--15270120	26	2.0	26	92	0	88	24	18	28	28	1.98
15271647--15271699	26	2.0	26	92	7	90	28	20	24	26	1.99
15272151--15272203	26	2.0	26	92	0	88	24	18	28	28	1.98
15273298--15273353	26	2.2	26	83	6	69	26	21	25	26	1.99
15274309--15274360	25	2.0	26	92	3	88	25	19	28	26	1.98
15275152--15275204	26	2.0	26	92	0	88	24	15	28	32	1.95
15277732--15277772	19	2.0	21	90	9	68	17	43	14	24	1.86
15278163--15278215	26	2.0	26	85	7	72	28	18	22	30	1.98
15278189--15278687	157	3.2	154	74	8	443	22	29	27	20	1.98
15278661--15278716	26	2.2	26	90	6	87	25	16	26	32	1.96
15280006--15280595	159	3.7	158	76	5	528	22	30	28	18	1.97
15280569--15280621	26	2.0	26	89	7	81	26	18	26	28	1.98
15279425--15280899	673	2.2	677	82	4	1742	24	29	27	18	1.98
15282172--15282224	26	2.0	26	89	7	81	30	20	22	26	1.98
15283470--15283522	26	2.0	26	89	7	81	30	20	22	26	1.98
15283496--15283787	158	1.8	159	81	3	365	23	28	27	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15283966--15284016	26	2.0	26	96	0	93	25	15	31	27	1.96
15284676--15284727	26	2.0	26	85	7	70	30	17	23	28	1.97
15285583--15285635	26	2.0	26	86	13	74	28	24	20	26	1.99
15283812--15285691	907	2.1	885	85	4	2540	26	23	24	25	2.00
15286762--15286814	26	2.0	26	92	7	90	28	20	24	26	1.99
15287264--15287316	26	2.0	26	92	0	88	26	20	26	26	1.99
15289824--15290319	158	3.1	156	75	11	436	22	29	27	19	1.98
15290300--15290352	26	2.0	26	92	0	88	24	18	28	28	1.98
15290956--15291008	26	2.0	26	85	0	70	28	18	28	24	1.98
15291137--15292432	501	2.6	492	80	5	1314	23	30	26	19	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138