genome.fa.s124.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  61  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12601345--12601397	26	2.0	26	92	0	88	24	15	28	32	1.95
12601714--12601766	26	2.0	26	89	7	81	28	22	22	26	1.99
12601340--12602024	356	1.9	363	80	6	816	22	29	28	19	1.98
12601740--12602155	159	2.6	159	82	3	480	23	29	28	18	1.98
12609085--12609140	26	2.2	26	87	6	78	28	17	23	30	1.97
12610331--12610782	159	2.8	159	76	6	486	23	30	28	17	1.97
12611271--12611560	158	1.8	160	80	5	356	22	33	26	17	1.96
12611567--12611617	26	2.0	26	88	0	75	27	15	25	31	1.96
12612324--12612666	158	2.2	158	80	4	379	26	27	25	20	1.99
12612996--12613048	26	2.0	26	89	7	81	28	18	24	28	1.98
12613205--12613257	26	2.0	26	89	7	81	30	20	24	24	1.99
12613230--12613729	158	3.2	155	73	6	443	25	29	25	19	1.99
12614070--12614120	26	2.0	26	88	7	77	33	17	23	25	1.96
12616277--12616329	26	2.0	26	92	7	90	28	20	24	26	1.99
12616302--12616646	158	2.2	157	77	4	345	23	26	27	22	1.99
12616619--12616672	26	2.1	26	89	6	83	25	18	27	27	1.98
12617001--12617053	26	2.0	26	82	13	65	30	16	22	30	1.96
12617024--12617458	142	3.0	142	77	10	367	22	30	29	17	1.96
12617170--12617515	159	2.2	158	79	7	371	21	30	29	18	1.97
12618211--12618262	26	2.0	26	85	7	70	28	15	26	28	1.96
12618711--12618763	26	2.0	26	88	0	79	33	18	18	28	1.95
12619078--12619128	26	2.0	26	92	7	86	29	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12619103--12619518	159	2.7	155	76	6	408	25	28	26	19	1.99
12619577--12619629	26	2.0	26	88	0	79	28	20	22	28	1.99
12619937--12620367	159	2.7	158	75	5	395	23	29	27	19	1.98
12620413--12620464	26	2.0	26	84	0	68	30	19	23	26	1.98
12620508--12620975	169	2.8	166	78	9	408	24	30	25	20	1.99
12620757--12621080	156	2.1	155	79	6	348	23	28	26	21	1.99
12621093--12621460	182	2.0	182	82	4	436	24	29	26	19	1.98
12622446--12622497	26	2.0	25	89	10	79	28	17	25	28	1.97
12622942--12622994	26	2.0	26	85	7	72	28	18	24	28	1.98
12623691--12624129	159	2.8	156	78	6	420	22	30	28	18	1.97
12624533--12624585	26	2.0	26	85	7	72	30	18	22	28	1.98
12625870--12625922	26	2.0	26	92	0	88	22	16	28	32	1.96
12626235--12626287	26	2.0	26	85	7	72	30	16	22	30	1.96
12626734--12626785	26	2.0	25	88	3	77	28	19	21	30	1.97
12626577--12626943	181	2.0	184	84	3	483	22	29	27	19	1.98
12626062--12627174	498	2.2	502	83	4	1323	23	28	27	20	1.99
12626758--12627581	321	2.6	317	83	4	969	22	29	28	19	1.98
12626758--12627581	159	5.2	157	75	6	651	22	29	28	19	1.98
12627555--12627607	26	2.0	26	85	0	70	24	18	26	30	1.98
12628632--12628684	26	2.0	26	89	7	81	30	18	22	28	1.98
12629057--12629109	26	2.0	26	88	0	79	26	18	26	28	1.98
12629254--12629306	26	2.0	26	82	7	63	32	16	22	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12629279--12629707	159	2.7	157	77	6	409	23	29	28	18	1.98
12630879--12630931	26	2.0	26	88	0	79	28	20	24	26	1.99
12631601--12631653	26	2.0	26	85	7	72	30	18	20	30	1.97
12631944--12631994	26	2.0	26	88	0	75	23	17	27	31	1.97
12632153--12632205	26	2.0	26	92	0	88	30	20	20	28	1.98
12632349--12632404	26	2.2	26	87	6	78	28	12	25	33	1.92
12632098--12632658	196	2.9	194	78	9	564	24	26	26	22	2.00
12632533--12632584	25	2.0	25	85	3	68	25	15	28	30	1.96
12633250--12633302	26	2.0	26	92	7	90	28	20	24	26	1.99
12633593--12633645	26	2.0	26	85	0	70	26	16	26	30	1.97
12635021--12635070	26	2.0	25	88	4	73	30	18	20	32	1.96
12635887--12636232	158	2.2	157	80	2	359	23	27	26	22	1.99
12636206--12636258	26	2.0	26	82	13	65	26	18	24	30	1.98
12637407--12637459	26	2.0	26	92	0	88	26	16	28	28	1.97
12637090--12637772	347	2.0	343	84	4	881	22	28	26	21	1.99
12638071--12638123	26	2.0	26	89	7	81	26	18	26	28	1.98
12638757--12638808	26	2.0	26	85	7	70	28	13	25	32	1.93
12639428--12639480	26	2.0	26	92	0	88	24	18	28	28	1.98
12639782--12639834	26	2.0	26	85	7	72	30	16	24	28	1.97
12640330--12640820	159	3.1	158	75	8	408	21	29	27	20	1.98
12639750--12640752	515	2.0	513	84	1	1326	22	29	26	21	1.99
12640797--12640847	26	2.0	26	88	0	75	25	15	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12644608--12644660	26	2.0	26	92	0	88	24	18	28	28	1.98
12644973--12645025	26	2.0	26	85	7	72	30	16	22	30	1.96
12644998--12645497	157	3.2	157	76	5	440	22	28	28	20	1.99
12645472--12645523	26	2.0	25	96	3	95	28	21	23	26	1.99
12645312--12645681	184	2.0	184	83	4	460	24	30	26	19	1.98
12644946--12646055	499	2.2	498	83	4	1360	23	29	26	20	1.99
12645496--12645904	159	2.6	156	75	5	390	25	30	26	17	1.97
12645972--12646024	25	2.0	27	85	7	74	26	20	24	28	1.99
12645655--12646752	343	3.2	340	72	13	958	22	29	27	20	1.99
12648368--12648420	26	2.0	26	85	7	72	32	18	20	28	1.97
12648393--12648755	157	2.3	157	78	5	374	24	30	26	18	1.98
12648393--12648800	159	2.6	155	75	6	381	25	29	27	18	1.98
12649979--12650029	26	2.0	26	88	0	75	29	15	25	29	1.96
12650696--12650748	26	2.0	26	89	7	81	28	18	24	28	1.98
12650721--12651029	158	2.0	158	87	2	451	20	33	29	16	1.94
12650721--12651064	158	2.2	158	84	3	442	21	31	28	18	1.97
12651038--12651090	26	2.0	26	85	0	70	26	16	24	32	1.97
12651201--12651225	12	2.1	12	100	0	50	8	32	28	32	1.86
12651148--12651531	196	2.0	196	86	2	538	23	28	25	23	2.00
12651148--12651605	196	2.3	196	82	0	495	23	28	25	22	1.99
12652345--12652397	26	2.0	26	89	7	81	30	20	22	26	1.98
12652688--12652738	26	2.0	26	88	0	75	29	11	25	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12654618--12654668	26	2.0	26	92	7	86	25	19	25	29	1.99
12656537--12656589	26	2.0	26	85	7	72	28	18	24	28	1.98
12657211--12657264	26	2.1	26	86	6	74	27	22	25	24	2.00
12657895--12657946	26	2.0	26	85	7	70	28	13	25	32	1.93
12656061--12658938	672	4.3	670	79	5	2785	23	29	26	20	1.99
12658057--12658554	157	3.2	158	74	5	461	22	30	27	20	1.98
12658564--12658616	26	2.0	26	88	0	79	24	16	28	30	1.97
12658919--12658971	26	2.0	26	89	7	81	30	20	22	26	1.98
12658367--12659042	355	1.9	354	83	3	876	23	29	27	19	1.98
12658760--12659118	184	2.0	184	84	1	477	23	28	27	20	1.99
12659768--12660228	159	2.9	157	79	5	495	23	31	26	18	1.97
12666909--12666961	26	2.0	26	92	0	88	30	20	24	24	1.99
12667479--12667531	26	2.0	26	88	0	79	26	22	26	24	2.00
12668778--12668830	26	2.0	26	88	0	79	24	16	30	28	1.97
12669055--12669107	26	2.0	26	89	7	81	28	20	24	26	1.99
12669742--12669794	26	2.0	26	92	0	88	22	20	30	26	1.98
12670102--12670153	26	2.0	26	92	0	86	26	19	26	26	1.99
12669559--12670245	359	1.9	362	84	2	927	24	26	27	20	1.99
12670311--12670363	26	2.0	26	92	7	90	32	20	20	26	1.98
12670818--12670868	26	1.9	27	84	4	68	27	19	31	21	1.97
12671179--12671231	26	2.0	26	89	7	81	32	20	20	26	1.98
12671020--12671379	184	2.0	182	81	6	424	25	28	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12671204--12671696	159	3.1	156	75	8	361	23	29	27	19	1.98
12671678--12671730	26	2.0	26	89	7	81	24	16	28	30	1.97
12672400--12672451	26	2.0	25	85	3	68	32	17	23	26	1.96
12672754--12672820	26	2.6	26	92	0	107	26	17	25	29	1.98
12673884--12673936	26	2.0	26	92	7	90	26	20	26	26	1.99
12674093--12674145	26	2.0	26	85	7	72	28	20	22	28	1.99
12674962--12675014	26	2.0	26	92	0	88	24	18	28	28	1.98
12674410--12675185	368	2.1	366	86	3	1071	23	27	26	22	2.00
12676620--12676672	26	2.0	26	92	0	88	26	20	26	26	1.99
12677000--12677052	26	2.0	26	89	7	81	28	18	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138