genome.fa.s124.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  97  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15441239--15441729	158	3.1	157	74	5	441	26	29	24	18	1.98
15441703--15441781	26	3.0	26	86	0	113	25	16	29	29	1.97
15442457--15442508	25	2.0	26	88	3	79	25	17	26	30	1.97
15443654--15443706	26	2.0	26	89	7	81	24	16	28	30	1.97
15443858--15444223	188	2.0	184	83	4	466	25	30	24	19	1.98
15444197--15444502	159	1.9	158	80	3	346	23	31	27	17	1.97
15444514--15444566	26	2.0	26	92	0	88	24	18	28	28	1.98
15445556--15446313	341	2.2	350	80	6	801	23	27	28	20	1.99
15446411--15446723	159	2.0	159	80	5	355	24	30	26	17	1.97
15445516--15447401	866	2.2	869	79	5	1956	23	28	27	21	1.99
15447470--15447522	26	2.0	26	92	7	90	30	20	22	26	1.98
15446566--15448278	711	2.4	699	79	6	1827	24	27	25	22	1.99
15449880--15449932	26	2.0	26	89	7	81	30	20	22	26	1.98
15449902--15450305	159	2.5	158	78	5	411	23	29	27	19	1.98
15450779--15450831	26	2.0	26	89	7	81	30	16	22	30	1.96
15451647--15451699	26	2.0	26	89	7	81	28	18	24	28	1.98
15451673--15452048	159	2.4	159	78	5	375	23	29	27	19	1.98
15452149--15452201	26	2.0	26	89	7	81	32	18	22	26	1.97
15452874--15452926	26	2.0	26	89	7	81	30	20	22	26	1.98
15454018--15454069	26	2.0	25	88	3	77	30	19	21	28	1.97
15454354--15454723	184	2.0	184	84	2	483	25	30	24	20	1.98
15454548--15455039	158	3.1	158	75	4	373	25	28	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15454538--15454985	158	2.8	158	75	5	404	25	28	25	21	1.99
15453982--15455137	501	2.3	495	78	5	1163	25	28	24	21	1.99
15455763--15456265	158	3.2	159	78	3	514	24	29	26	19	1.98
15456607--15456659	26	2.0	26	88	0	79	24	16	30	28	1.97
15457171--15457221	26	1.9	27	84	4	68	29	13	27	29	1.94
15457891--15457961	26	2.7	26	85	8	83	33	19	21	25	1.97
15457917--15457969	26	2.0	26	96	0	97	30	18	22	28	1.98
15458984--15459036	26	2.0	26	89	7	81	24	20	26	28	1.99
15459630--15459706	26	3.0	26	92	3	111	31	16	23	28	1.96
15460355--15460433	26	3.0	24	83	10	95	26	17	30	25	1.97
15461616--15461668	26	2.0	26	88	0	79	24	16	28	30	1.97
15461997--15462052	26	2.2	26	90	6	87	26	16	25	32	1.96
15462022--15462520	158	3.2	158	75	7	404	23	29	26	20	1.99
15462878--15462930	26	2.0	26	89	7	81	30	20	22	26	1.98
15461110--15463459	882	2.7	874	81	4	2691	24	28	26	21	1.99
15462904--15463400	159	3.1	158	75	6	407	23	29	26	20	1.99
15463380--15463430	26	2.0	26	96	0	93	31	15	21	31	1.95
15463909--15463936	12	2.3	12	100	0	56	35	17	32	14	1.90
15463949--15464438	159	3.1	158	80	7	496	21	28	29	20	1.98
15464411--15464464	26	2.1	26	89	0	81	25	18	27	27	1.98
15465155--15465557	158	2.6	158	78	5	370	25	27	27	20	1.99
15466330--15466382	26	2.0	26	89	7	81	28	15	24	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15466171--15466532	184	2.0	184	82	3	442	24	27	25	22	2.00
15466831--15466883	26	2.0	26	92	0	88	24	16	26	32	1.97
15467156--15467506	184	1.9	184	84	2	472	23	29	27	19	1.98
15468860--15469424	158	3.6	157	76	4	546	23	29	28	18	1.98
15476473--15476881	159	2.6	158	77	6	414	25	26	27	21	1.99
15477254--15477306	26	2.0	26	92	7	90	26	20	26	26	1.99
15477917--15477995	26	3.0	26	87	3	115	30	15	24	30	1.95
15477968--15478262	158	1.9	158	82	4	380	22	29	28	19	1.98
15478530--15479456	159	5.8	158	74	8	609	24	29	26	20	1.99
15478959--15479292	171	2.0	171	79	4	361	23	30	26	19	1.98
15479494--15479546	26	2.0	26	86	13	74	30	16	22	30	1.96
15479520--15480049	159	3.3	156	74	7	446	23	29	26	20	1.99
15480665--15480717	26	2.0	26	89	7	81	28	18	24	28	1.98
15480690--15481121	159	2.7	156	82	5	519	22	29	29	18	1.98
15481702--15481753	26	2.0	26	92	0	86	26	19	26	26	1.99
15482239--15482291	26	2.0	26	85	7	72	30	18	22	28	1.98
15482892--15482941	25	2.0	26	88	4	75	30	12	24	34	1.91
15483796--15483848	26	2.0	26	92	0	88	28	18	24	28	1.98
15484517--15484569	26	2.0	26	89	7	81	28	18	24	28	1.98
15482733--15484728	906	2.2	902	87	1	2904	26	23	24	25	2.00
15484543--15485045	159	3.2	156	78	5	521	22	30	28	19	1.98
15485019--15485074	26	2.2	26	90	0	85	25	16	26	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15486292--15486705	157	2.6	158	81	3	458	24	30	28	16	1.97
15487656--15487708	26	2.0	26	85	0	70	26	16	26	30	1.97
15488062--15488563	157	3.2	157	78	5	510	24	29	26	19	1.99
15488061--15488563	159	3.2	158	78	5	399	24	29	26	19	1.99
15488537--15488589	26	2.0	26	92	0	88	26	20	26	26	1.99
15494445--15494497	26	2.0	26	92	0	88	24	15	28	32	1.95
15495936--15495988	26	2.0	26	82	13	65	28	18	24	28	1.98
15495971--15496939	159	6.1	159	75	4	704	24	28	26	21	1.99
15496225--15496939	318	2.3	317	83	4	877	23	28	26	21	1.99
15496913--15496965	26	2.0	26	88	0	79	24	20	26	28	1.99
15497476--15497528	26	2.0	26	92	0	88	26	16	26	30	1.97
15498607--15498659	26	2.0	26	89	7	81	26	15	26	32	1.95
15499477--15499529	26	2.0	26	88	0	79	26	18	24	30	1.98
15500185--15500237	26	2.0	26	85	7	72	28	16	24	30	1.97
15500845--15501706	159	5.4	157	73	7	652	22	29	26	21	1.99
15500863--15501706	318	2.7	315	82	4	973	22	29	26	21	1.99
15501680--15501732	26	2.0	26	88	0	79	26	18	26	28	1.98
15502410--15502460	26	2.0	26	92	0	84	33	19	17	29	1.95
15502902--15502954	26	2.0	26	88	0	79	26	18	26	28	1.98
15502927--15503296	171	2.2	171	80	6	410	22	30	27	19	1.98
15503305--15504597	158	8.1	157	74	8	801	24	29	26	19	1.99
15503781--15504543	159	4.8	156	75	7	583	24	29	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15503781--15504597	317	2.6	314	81	4	942	23	29	26	20	1.99
15504711--15505134	159	2.7	157	76	9	396	24	28	27	20	1.99
15505182--15505234	26	2.0	26	92	0	88	24	18	28	28	1.98
15505574--15506025	158	2.9	156	77	6	464	23	29	26	20	1.98
15506784--15507276	158	3.1	158	75	5	476	22	29	26	21	1.99
15508280--15508334	26	2.1	26	83	6	67	29	18	25	27	1.98
15509094--15509146	26	2.0	26	88	0	79	28	20	24	26	1.99
15510148--15510200	26	2.0	26	85	0	70	22	16	30	30	1.96
15509803--15510445	343	1.9	342	83	2	853	23	28	28	20	1.99
15510173--15510609	159	2.8	158	82	4	524	23	30	28	17	1.97
15510174--15510675	159	3.2	157	79	6	523	22	30	27	18	1.98
15511374--15511426	26	2.0	26	89	7	81	28	18	24	28	1.98
15511400--15511902	159	3.2	158	73	8	457	23	30	26	20	1.98
15511876--15511928	26	2.0	26	92	0	88	26	20	24	28	1.99
15512096--15512458	158	2.3	158	82	2	417	24	30	26	18	1.98
15512720--15512772	26	2.0	26	92	0	88	24	15	28	32	1.95
15513443--15513937	158	3.1	159	76	7	443	23	28	27	21	1.99
15513918--15513970	26	2.0	26	88	0	79	26	18	26	28	1.98
15514261--15514564	158	1.9	159	80	3	353	23	28	28	20	1.98
15514771--15514823	26	2.0	26	92	7	90	28	20	24	26	1.99
15514806--15515043	123	1.9	123	82	1	298	23	26	29	20	1.99
15516011--15516063	26	2.0	26	92	7	90	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15516323--15516703	194	2.0	195	84	4	511	25	30	24	19	1.98
15517016--15517097	41	2.0	41	85	0	110	17	31	19	31	1.95
15517090--15517142	26	2.0	26	92	0	88	26	20	26	26	1.99
15517470--15517522	26	2.0	26	92	7	90	28	20	24	26	1.99
15517496--15517989	158	3.1	156	77	6	501	24	30	26	18	1.98
15519278--15519778	158	3.2	157	79	5	508	23	29	27	19	1.98
15520473--15520525	26	2.0	26	92	7	90	28	20	24	26	1.99
15520498--15521068	159	3.6	156	78	6	523	23	28	28	19	1.98
15520499--15521153	158	4.2	158	76	8	548	22	29	27	20	1.98
15521152--15521524	170	2.2	174	78	7	393	21	28	28	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138