genome.fa.s124.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  5  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029281--1029386	47	2.2	48	83	3	133	57	7	9	25	1.56
1036389--1036419	12	2.6	12	89	0	53	48	6	3	41	1.45
1048643--1048701	25	2.4	25	86	10	79	50	0	0	49	1.00
1050843--1050893	22	2.3	23	76	10	61	43	1	0	54	1.11
1051780--1051844	23	2.7	23	69	4	58	33	1	3	61	1.21
1051825--1051858	16	2.2	16	89	5	52	29	2	0	67	1.05
1051839--1051868	13	2.3	13	94	0	51	33	6	0	60	1.23
1057501--1057549	26	1.9	25	87	4	71	36	6	0	57	1.24
1066398--1066428	4	7.8	4	92	0	53	54	0	0	45	0.99
1066381--1066427	12	4.0	12	81	10	53	59	0	2	38	1.09
1070715--1070757	12	3.6	12	87	0	59	55	0	0	44	0.99
1070715--1070784	24	3.0	24	81	12	83	52	0	1	45	1.09
1071971--1072007	13	2.8	13	91	0	56	81	0	0	18	0.70
1071972--1072012	13	3.1	13	89	3	55	78	0	0	21	0.76
1081891--1081921	3	10.3	3	100	0	62	67	0	0	32	0.91
1087901--1087938	2	19.0	2	94	0	67	50	2	0	47	1.15
1091528--1091709	39	4.7	39	88	2	249	20	17	19	42	1.90
1104879--1104917	20	2.0	20	89	0	60	74	5	0	20	1.01
1109294--1109335	15	2.7	15	88	3	57	47	4	2	45	1.36
1109383--1109412	2	15.0	2	100	0	60	50	0	0	50	1.00
1111295--1111322	3	9.3	3	100	0	56	32	0	0	67	0.91
1111319--1111364	6	7.5	6	90	4	74	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1111309--1111375	25	2.7	25	88	4	100	28	0	0	71	0.86
1111319--1111375	19	3.1	19	78	12	64	28	0	0	71	0.86
1111295--1111386	6	15.3	6	85	4	60	27	0	0	72	0.84
1111769--1111827	10	5.9	10	75	15	50	16	1	11	69	1.26
1111766--1111826	30	2.0	30	84	9	79	18	1	13	67	1.31
1112198--1112255	5	12.0	5	83	9	59	15	3	1	79	0.95
1122861--1123111	89	2.8	89	84	2	297	19	17	12	49	1.79
1122963--1123415	208	2.2	208	79	3	489	20	20	13	45	1.84
1122755--1123321	297	1.9	297	80	2	654	20	20	12	46	1.82
1123867--1123909	3	14.3	3	90	0	68	30	2	0	67	1.03
1124761--1124797	5	7.0	5	93	6	56	18	0	0	81	0.70
1124760--1124796	11	3.4	11	85	14	58	16	0	0	83	0.64
1124769--1124830	32	1.9	32	83	6	81	22	6	1	69	1.20
1126367--1126409	7	6.1	7	78	10	52	34	0	0	65	0.93
1149164--1149207	23	2.0	22	81	4	52	54	0	0	45	0.99
1151016--1151040	2	12.5	2	100	0	50	48	0	0	52	1.00
1153811--1153872	31	2.0	31	100	0	124	12	25	6	54	1.62
1161390--1161443	15	3.7	15	80	12	58	33	0	0	66	0.92
1161423--1161457	13	2.7	13	90	0	52	45	0	0	54	0.99
1161592--1161632	19	2.0	22	86	13	61	56	2	0	41	1.13
1162473--1162520	17	3.1	15	82	8	53	45	0	2	52	1.12
1162594--1162645	8	6.5	8	75	16	54	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1162580--1162647	32	2.1	32	86	5	93	54	0	1	44	1.09
1162580--1162635	15	3.6	15	81	13	60	57	0	1	41	1.09
1162588--1162645	17	3.6	16	80	17	66	56	0	1	41	1.09
1162600--1162643	23	1.9	23	95	0	79	61	0	0	38	0.96
1162972--1162997	13	2.0	13	100	0	52	7	7	0	84	0.77
1169590--1169624	2	17.5	2	100	0	70	51	0	0	48	1.00
1177262--1177304	14	3.2	14	83	12	63	65	0	18	16	1.28
1188440--1188506	34	2.0	34	100	0	134	20	14	20	43	1.88
1188692--1188732	21	2.0	21	85	0	55	14	29	0	56	1.39
1191814--1191864	24	2.2	22	86	6	66	33	3	15	47	1.64
1192025--1192054	10	3.1	10	95	4	53	63	0	0	36	0.95
1193962--1193994	4	8.2	4	87	12	50	72	0	27	0	0.85
1195122--1195163	21	2.0	21	95	4	77	23	23	9	42	1.83
1196262--1196303	22	1.9	22	90	0	66	47	9	14	28	1.75
1198132--1198174	20	2.2	20	95	0	77	53	0	37	9	1.33
1200504--1200547	22	2.0	22	90	0	70	47	9	9	34	1.67
1200507--1200560	22	2.5	22	84	6	65	51	5	9	33	1.57
1205085--1205121	16	2.3	17	86	9	51	72	5	5	16	1.21
1210716--1210750	2	17.5	2	100	0	70	48	0	0	51	1.00
1212998--1213051	22	2.6	21	82	8	65	9	24	1	64	1.32
1225426--1225479	22	2.5	21	82	11	65	27	16	16	38	1.90
1230916--1230940	12	2.1	12	100	0	50	24	0	44	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1234616--1234661	18	2.6	18	89	0	74	28	13	17	41	1.86
1235809--1235853	22	2.0	22	91	0	72	35	20	20	24	1.96
1242084--1242117	12	2.9	12	91	4	52	26	38	5	29	1.80
1243405--1243498	21	4.4	21	73	1	71	32	19	14	32	1.92
1244548--1244592	22	2.0	22	91	0	72	35	15	20	28	1.93
1244545--1244640	21	4.5	21	78	2	93	33	15	17	33	1.92
1250176--1250259	13	6.5	12	70	18	53	39	1	0	59	1.05
1250190--1250251	24	2.6	23	80	12	72	35	1	0	62	1.05
1251714--1252095	192	2.0	193	94	0	676	30	19	17	32	1.95
1252422--1252459	2	19.0	2	100	0	76	50	0	0	50	1.00
1253363--1253391	14	2.0	15	93	6	51	58	0	0	41	0.98
1253501--1253533	17	2.1	16	88	11	50	48	0	0	51	1.00
1253651--1253685	16	2.2	16	94	0	61	28	0	5	65	1.15
1253798--1253833	18	1.9	19	88	5	56	50	13	0	36	1.43
1255759--1255806	25	2.0	23	88	8	69	45	0	2	52	1.12
1260352--1260393	21	2.0	21	86	9	59	50	0	2	47	1.14
1260406--1260445	20	2.0	20	90	5	62	57	0	0	42	0.98
1272319--1272344	12	2.2	12	100	0	52	23	0	7	69	1.14
1273543--1273766	121	1.8	122	87	4	328	38	6	5	48	1.54
1276706--1276751	22	2.1	22	83	0	56	65	2	0	32	1.05
1276885--1276939	4	13.0	4	81	14	58	50	0	0	49	1.00
1276889--1276938	27	1.9	25	92	8	82	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1282302--1282342	2	20.5	2	100	0	82	51	0	0	48	1.00
1288528--1288573	21	2.1	23	84	8	60	36	2	8	52	1.45
1289066--1289096	15	2.1	15	100	0	62	32	6	12	48	1.67
1294442--1294483	2	20.5	2	95	4	75	50	2	47	0	1.14
1296944--1296982	20	2.0	20	89	0	60	30	28	15	25	1.96
1305664--1305787	64	2.0	63	79	9	137	38	14	14	32	1.86
1305799--1305964	82	2.0	82	90	0	260	31	10	21	37	1.87
1306226--1306365	66	2.2	64	88	6	203	38	12	12	36	1.81
1309224--1309317	34	2.8	34	90	1	136	40	4	9	45	1.56
1324978--1325015	20	1.9	20	84	10	51	31	5	0	63	1.17
1332761--1332811	13	4.2	12	75	25	54	58	1	5	33	1.33
1332790--1332836	24	1.9	24	87	12	69	63	0	2	34	1.06
1332771--1332817	22	2.1	23	84	11	62	63	2	4	29	1.25
1333674--1333715	2	21.0	2	95	0	75	47	0	0	52	1.00
1334364--1334398	2	18.0	2	94	5	63	51	0	48	0	1.00
1340728--1340775	12	4.2	12	82	15	66	64	2	0	33	1.05
1340734--1340785	5	9.8	5	80	12	50	69	0	0	30	0.89
1340734--1340783	22	2.3	22	89	3	75	68	0	0	32	0.90
1340748--1340780	17	1.9	17	93	0	57	69	0	0	30	0.88
1341235--1341282	20	2.4	19	82	6	60	47	0	0	52	1.00
1341366--1341390	7	3.6	7	100	0	50	24	0	0	76	0.80
1351387--1351412	11	2.4	11	100	0	52	42	11	0	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1352148--1352186	18	2.2	18	90	9	62	56	28	5	10	1.54
1360229--1360264	2	18.0	2	100	0	72	50	0	0	50	1.00
1364821--1364854	16	2.0	18	88	11	54	32	5	8	52	1.56
1368324--1368373	23	2.2	24	82	13	61	50	0	0	50	1.00
1370400--1370431	15	2.1	15	94	0	55	37	0	12	50	1.41
1380054--1380122	32	2.1	34	83	5	88	62	4	0	33	1.15
1380068--1380144	29	2.6	30	82	10	88	67	1	1	29	1.07
1380067--1380154	29	3.0	29	83	8	81	64	2	2	30	1.18
1380896--1380940	21	2.1	21	91	0	72	28	24	28	17	1.97
1383546--1383578	15	2.3	14	94	5	57	27	0	12	60	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138