genome.fa.s124.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  93  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15133823--15133875	26	2.0	26	89	7	81	30	16	22	30	1.96
15134361--15134413	26	2.0	26	89	7	81	30	18	22	28	1.98
15134956--15135497	159	3.4	158	76	7	472	22	30	27	19	1.98
15135471--15135523	26	2.0	26	96	0	97	28	20	24	26	1.99
15134387--15135551	609	1.9	609	85	1	1611	23	29	26	19	1.98
15136544--15136596	26	2.0	26	89	7	81	24	16	28	30	1.97
15136635--15136659	13	1.9	13	100	0	50	16	16	56	12	1.68
15136753--15136805	26	2.0	26	89	7	81	33	22	18	24	1.97
15136778--15137281	159	3.2	157	75	6	469	24	29	26	20	1.99
15137255--15137307	26	2.0	26	89	7	81	26	18	26	28	1.98
15138861--15138913	26	2.0	26	88	0	79	24	16	28	30	1.97
15138857--15139215	195	1.8	196	79	4	411	24	26	27	22	2.00
15139911--15139962	26	2.0	26	92	7	88	28	19	25	26	1.98
15139936--15140509	159	3.6	157	73	8	471	25	29	25	19	1.98
15141099--15141601	159	3.2	157	74	9	366	25	29	25	20	1.99
15141938--15142348	159	2.6	157	74	6	380	25	28	27	18	1.98
15142414--15142466	26	2.0	26	86	13	74	24	16	26	32	1.97
15143493--15143545	26	2.0	26	89	7	81	30	18	22	28	1.98
15143835--15143887	26	2.0	26	88	0	79	30	22	20	26	1.98
15144031--15144083	26	2.0	26	85	7	72	32	18	20	28	1.97
15144532--15144584	26	2.0	26	92	0	88	26	18	28	26	1.98
15144626--15145168	159	3.4	158	75	4	425	21	31	27	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15145142--15145197	26	2.2	26	83	6	69	26	17	25	30	1.97
15145772--15145815	11	4.0	11	93	0	61	11	31	34	22	1.90
15145911--15146322	159	2.6	159	76	6	348	25	28	27	18	1.98
15146387--15146442	26	2.2	26	86	0	76	26	16	25	32	1.96
15146803--15147361	159	3.5	156	74	9	497	24	29	26	18	1.98
15147958--15148010	26	2.0	26	88	0	79	26	18	26	28	1.98
15148192--15148624	160	2.7	157	75	6	415	24	28	27	19	1.99
15148352--15149093	343	2.2	344	80	4	818	25	28	25	20	1.99
15149733--15149785	26	2.0	26	85	7	72	30	18	22	28	1.98
15150046--15150098	26	2.0	26	92	0	88	26	16	24	32	1.97
15150043--15150400	196	1.8	196	81	3	452	23	25	28	23	2.00
15150742--15150794	26	2.0	26	85	7	72	30	18	24	26	1.98
15151109--15151161	26	2.0	26	89	7	81	30	20	22	26	1.98
15151601--15151653	26	2.0	26	92	0	88	24	18	26	30	1.98
15151797--15151847	26	2.0	26	92	7	86	31	19	21	27	1.97
15150143--15151823	859	1.9	863	79	5	1831	23	28	25	21	1.99
15151822--15152181	158	2.3	160	79	6	383	23	29	26	20	1.99
15150938--15152372	696	2.1	688	79	4	1544	24	28	25	21	1.99
15153850--15153902	26	2.0	26	89	7	81	28	18	24	28	1.98
15154376--15154428	26	2.0	26	89	7	81	28	22	24	24	2.00
15155181--15155233	26	2.0	26	96	0	97	28	20	24	26	1.99
15155568--15156002	159	2.8	157	75	3	352	25	28	26	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15156755--15156807	26	2.0	26	85	7	72	30	20	24	24	1.99
15157960--15158012	26	2.0	26	89	7	81	28	18	24	28	1.98
15158828--15158877	26	1.9	26	92	8	84	30	18	24	28	1.97
15159711--15159763	26	2.0	26	85	7	72	30	15	24	30	1.95
15157958--15160237	867	2.6	863	81	4	2519	24	28	26	20	1.99
15159895--15160268	158	2.4	158	78	7	373	24	31	26	18	1.98
15161577--15161629	26	2.0	26	96	0	97	32	20	24	22	1.98
15161602--15162016	159	2.6	158	78	7	435	23	28	29	18	1.98
15161602--15162104	158	3.2	157	77	5	474	22	29	27	19	1.98
15162078--15162130	26	2.0	26	88	0	79	24	16	28	30	1.97
15162453--15162505	26	2.0	26	89	7	81	32	18	20	28	1.97
15162955--15163007	26	2.0	26	92	0	88	28	22	24	24	2.00
15163045--15163322	143	1.9	143	81	4	328	23	32	25	19	1.98
15162265--15163603	486	2.7	487	78	5	1339	23	29	27	19	1.98
15164288--15164623	170	2.0	170	87	5	491	23	28	27	21	1.99
15164458--15164899	159	2.8	159	78	5	437	25	29	25	19	1.99
15164966--15165018	26	2.0	26	96	0	97	24	20	28	26	1.99
15165701--15165753	26	2.0	26	92	7	90	28	20	24	26	1.99
15165897--15165949	26	2.0	26	92	7	90	28	20	24	26	1.99
15165922--15166371	159	2.8	158	76	7	446	24	29	27	19	1.98
15166626--15167054	159	2.7	157	78	4	423	25	28	26	19	1.99
15166751--15167131	159	2.4	159	74	5	356	24	30	23	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15167436--15167488	26	2.0	26	92	7	90	26	20	26	26	1.99
15167901--15167953	26	2.0	26	85	7	72	24	15	28	32	1.95
15169024--15169076	26	2.0	26	85	7	72	32	18	20	28	1.97
15169049--15169466	159	2.6	157	72	9	364	26	27	25	20	1.99
15168922--15170864	880	2.2	879	82	3	2298	23	28	25	21	1.99
15170785--15170837	26	2.0	26	89	7	81	24	16	28	30	1.97
15172045--15172097	26	2.0	26	82	7	63	32	18	22	26	1.97
15172070--15172473	153	2.6	156	77	5	408	24	28	26	19	1.99
15172523--15172579	26	2.3	26	82	11	75	28	19	22	29	1.98
15173436--15173791	158	2.2	158	85	3	475	26	29	23	19	1.99
15174954--15175003	26	1.9	26	87	0	73	30	18	26	26	1.98
15175647--15176154	159	3.2	154	76	8	423	23	28	27	20	1.99
15177134--15177425	158	1.8	158	81	4	356	22	28	28	20	1.99
15178199--15178490	158	1.8	158	79	2	336	22	28	28	20	1.98
15178516--15178568	26	2.0	26	88	0	79	24	20	26	28	1.99
15179580--15179632	26	2.0	26	89	7	81	24	18	26	30	1.98
15179790--15179840	26	2.0	26	88	7	77	29	15	25	29	1.96
15180290--15180342	26	2.0	26	92	0	88	26	20	26	26	1.99
15187501--15187785	159	1.8	157	81	1	354	22	30	28	18	1.97
15187807--15187860	26	2.1	26	92	0	90	22	20	31	25	1.98
15188531--15188583	26	2.0	26	85	7	72	30	18	22	28	1.98
15189033--15189083	26	2.0	26	88	0	75	27	21	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15189898--15189950	26	2.0	26	88	0	79	26	18	26	28	1.98
15190568--15191057	157	3.1	156	77	3	489	23	29	26	20	1.99
15191032--15191083	25	2.0	25	85	3	68	26	17	28	26	1.97
15191056--15191424	171	2.2	171	79	3	393	22	29	27	20	1.99
15191398--15191468	26	2.7	26	93	4	117	32	18	22	26	1.97
15191453--15191866	159	2.6	158	84	2	506	22	30	29	17	1.96
15193858--15194637	158	4.8	158	73	7	591	22	30	27	18	1.98
15193858--15194639	317	2.4	317	82	3	929	23	30	27	18	1.98
15194701--15195154	159	2.9	158	77	5	468	23	30	26	18	1.98
15195336--15195388	26	2.0	26	92	7	90	28	20	24	26	1.99
15195837--15195889	26	2.0	26	88	0	79	28	18	26	26	1.98
15196694--15196773	41	2.0	41	85	5	108	10	33	27	28	1.89
15197964--15198015	26	2.0	26	88	7	79	28	17	25	28	1.97
15198306--15198358	26	2.0	26	92	0	88	24	15	28	32	1.95
15198515--15198567	26	2.0	26	92	7	90	28	20	24	26	1.99
15198540--15199668	159	7.1	157	74	7	757	23	30	26	19	1.98
15198540--15199668	316	3.6	315	81	5	1229	23	30	26	19	1.98
15198540--15199670	474	2.4	473	77	6	1171	23	30	26	19	1.98
15200711--15200763	26	2.0	26	88	0	79	26	18	26	28	1.98
15200921--15200973	26	2.0	26	92	7	90	28	20	24	26	1.99
15201679--15201995	171	1.9	171	91	0	517	21	27	27	23	1.99
15203255--15203305	26	2.0	26	88	7	77	29	13	25	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15203991--15204046	26	2.2	26	90	6	87	26	17	25	30	1.97
15203941--15204570	184	3.4	184	78	6	659	23	29	25	21	1.99
15204175--15204227	26	2.0	26	85	0	70	24	20	26	28	1.99
15203832--15204480	184	3.5	181	80	5	658	24	28	26	19	1.99
15204360--15204412	26	2.0	26	85	7	72	26	18	24	30	1.98
15204861--15204913	26	2.0	26	92	0	88	24	18	28	28	1.98
15205227--15205279	26	2.0	26	89	7	81	30	15	22	32	1.94
15205068--15205437	184	2.0	184	80	3	422	25	28	25	20	1.99
15206976--15207028	26	2.0	26	89	7	81	28	20	24	26	1.99
15207488--15207537	26	1.9	26	88	8	75	36	20	20	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138