genome.fa.s124.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167949.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_21, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19848060

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   

This is table  126  of  138  ( 16447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17834940--17834992	26	2.0	26	96	0	97	28	20	24	26	1.99
17836011--17836063	26	2.0	26	92	0	88	26	22	26	24	2.00
17835992--17836493	179	2.8	180	83	2	607	23	26	28	21	1.99
17835992--17836581	179	3.3	178	80	5	605	22	25	27	24	2.00
17837243--17837294	25	2.0	26	96	3	97	26	21	25	26	1.99
17837228--17837576	177	2.0	177	82	3	434	23	26	28	22	1.99
17838139--17838425	153	1.9	153	86	1	414	21	28	29	20	1.98
17839164--17839216	26	2.0	26	100	0	106	26	20	26	26	1.99
17839343--17839393	26	2.0	26	96	0	93	29	19	23	27	1.98
17839190--17840039	341	2.5	337	80	4	893	22	26	28	22	1.99
17840749--17840799	26	2.0	26	96	0	93	29	19	23	27	1.98
17841808--17841860	26	2.0	26	96	0	97	28	20	24	26	1.99
17842681--17843043	153	2.3	154	83	2	449	23	27	28	20	1.99
17842681--17843096	153	2.7	151	81	6	417	22	27	30	19	1.98
17843674--17843724	26	2.0	26	92	0	84	29	17	25	27	1.98
17843669--17844053	178	2.2	179	85	2	524	23	24	27	24	2.00
17843876--17844243	152	2.4	157	82	5	437	22	26	29	21	1.99
17845077--17845127	26	2.0	26	88	0	75	27	13	25	33	1.94
17845933--17846275	153	2.2	154	84	6	433	23	26	26	23	2.00
17846990--17847359	153	2.4	156	81	3	415	25	28	26	20	1.99
17849018--17849305	153	1.9	153	80	1	344	22	24	29	22	1.99
17850198--17850248	26	2.0	26	100	0	102	27	19	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17851090--17851140	26	2.0	26	96	0	93	29	19	25	25	1.99
17851267--17851317	26	2.0	26	100	0	102	27	19	25	27	1.99
17851090--17851426	179	1.9	179	84	3	455	23	25	29	22	1.99
17852111--17852163	26	2.0	26	92	0	88	30	20	22	26	1.98
17852108--17852520	179	2.3	182	83	3	501	23	24	27	24	2.00
17852475--17852553	26	3.0	26	92	0	131	27	18	25	27	1.98
17854410--17854803	153	2.5	153	81	3	421	22	29	28	19	1.98
17855447--17855499	26	2.0	26	92	0	88	26	16	26	30	1.97
17855428--17856379	179	5.3	179	81	3	1021	23	26	27	22	2.00
17855811--17855862	26	2.0	25	92	3	86	26	19	25	28	1.98
17855989--17856039	26	2.0	26	92	0	84	27	19	23	29	1.98
17855425--17856376	363	2.6	360	83	4	1144	23	26	27	22	2.00
17857055--17857107	26	2.0	26	85	0	70	28	18	20	32	1.97
17857036--17857376	179	1.9	179	84	2	461	23	26	27	21	1.99
17858119--17858171	26	2.0	26	96	0	97	26	15	26	32	1.95
17858297--17858373	26	3.0	26	96	0	136	28	16	25	28	1.97
17860522--17860574	26	2.0	26	89	7	81	28	16	24	30	1.97
17861598--17861650	26	2.0	26	88	0	79	26	18	28	26	1.98
17862490--17862542	26	2.0	26	100	0	106	26	20	26	26	1.99
17861238--17863028	894	2.0	896	88	2	2676	25	26	26	21	1.99
17863544--17863917	153	2.5	149	80	4	396	23	27	27	21	1.99
17870472--17870548	26	3.0	27	84	7	115	35	18	19	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17871577--17871627	26	2.0	26	100	0	102	27	15	25	31	1.96
17870673--17872345	901	1.9	900	88	2	2581	25	22	24	27	2.00
17872628--17872678	26	2.0	26	92	0	84	29	13	25	31	1.94
17873667--17873719	26	2.0	26	92	0	88	26	20	26	26	1.99
17873514--17873995	179	2.7	179	85	1	655	23	27	27	21	1.99
17873846--17873896	26	2.0	26	92	0	84	27	17	23	31	1.97
17874742--17874792	26	2.0	26	92	0	84	27	17	21	33	1.96
17875059--17875111	26	2.0	26	96	0	97	28	16	24	30	1.97
17876105--17876157	26	2.0	26	96	0	97	26	18	26	28	1.98
17877181--17877233	26	2.0	26	96	0	97	26	18	26	28	1.98
17877175--17877501	179	1.8	179	84	1	449	22	25	29	22	1.99
17878718--17879080	153	2.3	152	78	8	381	25	25	26	22	2.00
17879733--17879785	26	2.0	26	100	0	106	26	20	26	26	1.99
17879901--17879951	26	2.0	26	100	0	102	27	15	25	31	1.96
17879714--17880017	168	1.8	168	88	1	466	25	25	27	21	1.99
17880783--17881510	185	4.0	179	82	4	830	22	27	28	21	1.99
17881299--17881349	26	2.0	26	92	0	84	29	17	23	29	1.97
17880783--17881507	363	2.0	364	87	0	1031	22	27	28	21	1.99
17887498--17887549	26	2.0	26	92	7	88	30	19	23	26	1.98
17888535--17888585	26	2.0	26	96	0	93	27	17	25	29	1.98
17888383--17889105	183	4.0	182	82	6	794	22	26	28	22	1.99
17888718--17888770	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17888383--17889105	361	2.0	361	86	3	1017	22	26	28	22	1.99
17893595--17893647	26	2.0	26	92	0	88	26	16	26	30	1.97
17893774--17893824	26	2.0	26	92	0	84	27	13	23	35	1.93
17893576--17893906	179	1.8	178	84	5	452	25	23	28	22	1.99
17894671--17894723	26	2.0	26	96	0	97	28	20	24	26	1.99
17895570--17895620	26	2.0	26	100	0	102	31	19	21	27	1.97
17895749--17895799	26	2.0	26	100	0	102	27	19	25	27	1.99
17895562--17895959	179	2.2	181	85	4	527	23	25	28	23	2.00
17898498--17898550	26	2.0	26	92	7	90	26	16	26	30	1.97
17898494--17898888	179	2.2	179	84	2	493	24	26	27	20	1.99
17899575--17899627	26	2.0	26	88	0	79	26	15	28	30	1.96
17899757--17899807	26	2.0	26	88	0	75	33	17	23	25	1.96
17901668--17901717	26	1.9	26	95	0	91	28	18	26	28	1.98
17902567--17902619	26	2.0	26	92	0	88	28	18	24	28	1.98
17902929--17902977	26	1.9	26	87	4	73	30	14	24	30	1.94
17903826--17903878	26	2.0	26	88	0	79	24	18	24	32	1.97
17903852--17904215	154	2.4	150	79	7	369	23	28	28	20	1.99
17904869--17904921	26	2.0	26	92	0	88	28	18	24	28	1.98
17905039--17906961	900	2.1	898	86	2	2664	25	23	24	26	2.00
17906845--17906897	26	2.0	26	96	0	97	26	18	26	28	1.98
17908847--17908899	26	2.0	26	96	0	97	26	18	26	28	1.98
17909026--17909076	26	2.0	26	96	0	93	27	17	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17908844--17909185	179	1.9	179	84	0	459	23	26	29	20	1.99
17910100--17910150	26	2.0	26	96	0	93	29	19	23	27	1.98
17909924--17910311	178	2.1	181	83	7	466	23	27	27	22	1.99
17911172--17911222	26	2.0	26	96	0	93	29	19	23	27	1.98
17910977--17911382	179	2.2	179	85	3	510	21	28	27	22	1.99
17913009--17913058	26	1.9	26	100	0	100	28	18	26	28	1.98
17913187--17913237	26	2.0	26	96	0	93	27	13	25	33	1.94
17913001--17913341	179	1.9	179	84	2	452	23	24	26	25	2.00
17914072--17914485	179	2.3	184	82	3	507	24	27	26	21	1.99
17915200--17915536	153	2.2	155	83	4	401	23	28	26	21	1.99
17919562--17919632	25	2.8	25	95	2	124	32	19	19	28	1.97
17920482--17920534	26	2.0	26	92	0	88	28	18	24	28	1.98
17920661--17920710	26	1.9	26	91	0	82	32	18	26	24	1.97
17922525--17922575	26	2.0	26	92	0	84	27	19	23	29	1.98
17923414--17923466	26	2.0	26	96	0	97	26	18	26	28	1.98
17923594--17923646	26	2.0	27	92	3	90	28	18	26	26	1.98
17924788--17924838	26	2.0	26	96	0	93	29	19	23	27	1.98
17925642--17926028	178	2.1	179	82	4	456	24	27	26	22	2.00
17926265--17927559	431	3.0	427	90	3	1934	29	23	21	25	1.99
17927575--17927624	26	1.9	26	92	8	84	28	16	28	28	1.97
17928470--17928522	26	2.0	26	96	0	97	26	20	24	28	1.99
17928451--17928789	178	1.9	178	85	2	466	22	26	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17929531--17929583	26	2.0	26	100	0	106	26	20	26	26	1.99
17929557--17929846	153	1.9	152	82	2	357	22	26	29	21	1.99
17930584--17930636	26	2.0	26	92	0	88	26	20	26	26	1.99
17930762--17930812	26	2.0	26	92	0	84	33	17	19	29	1.95
17930947--17931002	26	2.2	26	90	0	85	26	19	23	30	1.98
17930565--17931274	179	3.9	179	82	3	841	23	26	28	21	1.99
17930563--17931274	364	2.0	363	88	1	1059	23	26	28	21	1.99
17931152--17931489	158	2.1	158	84	3	446	23	27	27	21	1.99
17931470--17931520	26	2.0	26	88	0	75	27	13	29	29	1.94
17930788--17931817	522	2.0	517	82	3	1215	24	27	27	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138